RNA–Protein interactions for RNA: ENST00000576921.1

HCFC1R1-209, Transcript of host cell factor C1 regulator 1, human

TSL 1 (best)

Gene HCFC1R1, Length 1,199 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCFC1R1-209	ENST00000576921	PLEKHF1	Q96S99	279 aa		28.03	■■■□□ 2.08
HCFC1R1-209	ENST00000576921	KCNQ3	O43525	872 aa		28.02	■■■□□ 2.08
HCFC1R1-209	ENST00000576921	HTATSF1	O43719	755 aa	Known RBP	28.02	■■■□□ 2.08
HCFC1R1-209	ENST00000576921	STARD3NL	O95772	234 aa		28.02	■■■□□ 2.08
HCFC1R1-209	ENST00000576921	PNN	Q9H307	717 aa	Known RBP	28.02	■■■□□ 2.08
HCFC1R1-209	ENST00000576921	CANX	P27824	592 aa	Known RBP	28.01	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	N4BP2	Q86UW6	1770 aa	Predicted RBP	28	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	ZPR1	O75312	459 aa		27.99	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	FKBP8	Q14318	412 aa		27.99	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	NFE2L2	Q16236	605 aa		27.99	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	PARP3	Q9Y6F1	533 aa		27.99	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	YBX3	P16989	372 aa	Known RBP eCLIP	27.98	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	TEX13A	Q9BXU3	409 aa	Predicted RBP	27.98	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	KDM3B	Q7LBC6	1761 aa		27.98	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	KIAA1551	Q9HCM1	1747 aa		27.98	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	USPL1	Q5W0Q7	1092 aa		27.97	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	WWC3	Q9ULE0	1092 aa		27.97	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	C10orf71	Q711Q0	1435 aa		27.96	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.96	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	SCN7A	Q01118	1682 aa		27.95	■■■□□ 2.07
HCFC1R1-209	ENST00000576921	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.95	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	NARF	Q9UHQ1	456 aa		27.94	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	LAMB4	A4D0S4	1761 aa		27.94	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	AFDN	P55196	1824 aa	Known RBP	27.93	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	WDR43	Q15061	677 aa	Known RBP eCLIP	27.93	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	TAF7	Q15545	349 aa	Predicted RBP	27.93	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	THUMPD2	Q9BTF0	503 aa	Known RBP	27.93	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	PXDNL	A1KZ92	1463 aa		27.93	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	DDR1	Q08345	913 aa		27.92	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	MIS18A	Q9NYP9	233 aa		27.92	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	PRAMEF22	A3QJZ6	481 aa		27.91	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	A1BG	P04217	495 aa		27.91	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	GRIN3B	O60391	1043 aa		27.9	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	EIF5	P55010	431 aa	Known RBP	27.9	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	CCDC146	Q8IYE0	955 aa		27.9	■■■□□ 2.06
HCFC1R1-209	ENST00000576921		A0A087WZG4	1122 aa		27.89	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	SNRPA1	P09661	255 aa	Known RBP	27.89	■■■□□ 2.06
HCFC1R1-209	ENST00000576921	BCOR	Q6W2J9	1755 aa		27.88	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	BRCA1	P38398	1863 aa	Known RBP	27.88	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	NPM2	Q86SE8	214 aa	Known RBP	27.88	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	USP16	Q9Y5T5	823 aa		27.88	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	POLRMT	O00411	1230 aa	Known RBP	27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	IL6ST	P40189	918 aa	Predicted RBP	27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	PIP4K2A	P48426	406 aa	Predicted RBP	27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	RIPK4	P57078	832 aa		27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	PNISR	Q8TF01	805 aa	Known RBP	27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	BCL2L12	Q9HB09	334 aa		27.87	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	TM4SF1	P30408	202 aa		27.86	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	NRXN2	Q9P2S2	1712 aa		27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921		A0A0G2JLW4	131 aa		27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	TGFB2	P61812	414 aa		27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	NFIX	Q14938	502 aa		27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	TBC1D2B	Q9UPU7	963 aa		27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	RRP7A	Q9Y3A4	280 aa	Known RBP	27.85	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	TMPO	P42166	694 aa	Known RBP	27.84	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	DPEP1	P16444	411 aa		27.83	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	BICDL1	Q6ZP65	573 aa		27.83	■■■□□ 2.05
HCFC1R1-209	ENST00000576921	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.82	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	LMOD3	Q0VAK6	560 aa		27.82	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	NEUROD2	Q15784	382 aa		27.82	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	ADAMTS8	Q9UP79	889 aa		27.82	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	RUNDC1	Q96C34	613 aa		27.81	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	DZIP3	Q86Y13	1208 aa	Known RBP	27.79	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	ZNF784	Q8NCA9	323 aa	Predicted RBP	27.79	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	TSPYL4	Q9UJ04	414 aa		27.79	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	BCS1L	Q9Y276	419 aa		27.79	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	SERPINB2	P05120	415 aa		27.78	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	EIF4A1	P60842	406 aa	Known RBP	27.78	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	TBC1D9B	Q66K14	1250 aa		27.78	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	ARFGEF1	Q9Y6D6	1849 aa		27.78	■■■□□ 2.04
HCFC1R1-209	ENST00000576921	CAMTA2	O94983	1202 aa		27.76	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	DLEC1	Q9Y238	1755 aa		27.76	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	NBPF26	B4DH59	902 aa		27.75	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	GIGYF1	O75420	1035 aa	Predicted RBP	27.75	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	CHRNA5	P30532	468 aa		27.75	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	NBPF10	Q6P3W6	841 aa	Known RBP	27.75	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	NBPF15	Q8N660	670 aa		27.75	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	ANKRD31	Q8N7Z5	1873 aa		27.74	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	CARMIL3	Q8ND23	1372 aa		27.74	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	KCNA3	P22001	575 aa		27.72	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	PIM2	Q9P1W9	311 aa		27.72	■■■□□ 2.03
HCFC1R1-209	ENST00000576921	NPHP1	O15259	732 aa		27.7	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	SETDB2	Q96T68	719 aa		27.7	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	TRIM35	Q9UPQ4	493 aa		27.7	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	ZNF652	Q9Y2D9	606 aa		27.7	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	LAS1L	Q9Y4W2	734 aa	Known RBP	27.7	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	DALRD3	Q5D0E6	543 aa	Known RBP	27.69	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	NGEF	Q8N5V2	710 aa		27.69	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	COL11A2	P13942	1736 aa	Predicted RBP	27.69	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	NUP98	P52948	1817 aa		27.67	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	MYL6B	P14649	208 aa		27.67	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	CCDC184	Q52MB2	194 aa		27.67	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	CCDC24	Q8N4L8	307 aa		27.67	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	BABAM1	Q9NWV8	329 aa		27.67	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	PRR5L	Q6MZQ0	368 aa		27.66	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	ARHGAP27	Q6ZUM4	889 aa		27.66	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	CNBD1	Q8NA66	436 aa		27.66	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	ATP10D	Q9P241	1426 aa		27.66	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	CACNA1S	Q13698	1873 aa		27.66	■■■□□ 2.02
HCFC1R1-209	ENST00000576921	ANP32C	O43423	234 aa		27.65	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms