RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NARFQ9UHQ1 456 aa28.47■■■□□ 2.15
VPS53-216ENST00000574029 ZBTB1Q9Y2K1 713 aa28.47■■■□□ 2.15
VPS53-216ENST00000574029 AFDNP55196 1824 aaKnown RBP28.47■■■□□ 2.15
VPS53-216ENST00000574029 COL15A1P39059 1388 aa28.47■■■□□ 2.15
VPS53-216ENST00000574029 NRXN2Q9P2S2 1712 aa28.46■■■□□ 2.15
VPS53-216ENST00000574029 CHRNA5P30532 468 aa28.46■■■□□ 2.15
VPS53-216ENST00000574029 CEP350Q5VT06 3117 aa28.45■■■□□ 2.14
VPS53-216ENST00000574029 C9orf131Q5VYM1 1079 aa28.44■■■□□ 2.14
VPS53-216ENST00000574029 NFIXQ14938 502 aa28.43■■■□□ 2.14
VPS53-216ENST00000574029 IFFO2Q5TF58 517 aa28.43■■■□□ 2.14
VPS53-216ENST00000574029 SIPA1L3O60292 1781 aaPredicted RBP28.42■■■□□ 2.14
VPS53-216ENST00000574029 TOMM70O94826 608 aa28.42■■■□□ 2.14
VPS53-216ENST00000574029 BCL2L12Q9HB09 334 aa28.42■■■□□ 2.14
VPS53-216ENST00000574029 U2SURPO15042 1029 aaKnown RBP28.41■■■□□ 2.14
VPS53-216ENST00000574029 TTC5Q8N0Z6 440 aa28.4■■■□□ 2.14
VPS53-216ENST00000574029 IL17REQ8NFR9 667 aa28.4■■■□□ 2.14
VPS53-216ENST00000574029 NMRK2Q9NPI5 230 aa28.4■■■□□ 2.14
VPS53-216ENST00000574029 SBF1O95248 1867 aa28.4■■■□□ 2.14
VPS53-216ENST00000574029 DLEC1Q9Y238 1755 aa28.39■■■□□ 2.14
VPS53-216ENST00000574029 GNAT3A8MTJ3 354 aa28.39■■■□□ 2.14
VPS53-216ENST00000574029 GAS2L2Q8NHY3 880 aa28.39■■■□□ 2.14
VPS53-216ENST00000574029 STARD3NLO95772 234 aa28.38■■■□□ 2.13
VPS53-216ENST00000574029 CANXP27824 592 aaKnown RBP28.38■■■□□ 2.13
VPS53-216ENST00000574029 SERPINB2P05120 415 aa28.37■■■□□ 2.13
VPS53-216ENST00000574029 EIF5P55010 431 aaKnown RBP28.37■■■□□ 2.13
VPS53-216ENST00000574029 CNGB1Q14028 1251 aaPredicted RBP28.37■■■□□ 2.13
VPS53-216ENST00000574029 ZNF496Q96IT1 587 aaPredicted RBP28.37■■■□□ 2.13
VPS53-216ENST00000574029 TEFQ10587 303 aa28.36■■■□□ 2.13
VPS53-216ENST00000574029 ZNF790Q6PG37 636 aa28.36■■■□□ 2.13
VPS53-216ENST00000574029 HEG1Q9ULI3 1381 aa28.36■■■□□ 2.13
VPS53-216ENST00000574029 RNF181Q9P0P0 153 aa28.35■■■□□ 2.13
VPS53-216ENST00000574029 A0A087WZG4 1122 aa28.34■■■□□ 2.13
VPS53-216ENST00000574029 TEX13AQ9BXU3 409 aaPredicted RBP28.34■■■□□ 2.13
VPS53-216ENST00000574029 APLP1P51693 650 aa28.33■■■□□ 2.13
VPS53-216ENST00000574029 SCN7AQ01118 1682 aa28.32■■■□□ 2.12
VPS53-216ENST00000574029 CEMIPQ8WUJ3 1361 aa28.32■■■□□ 2.12
VPS53-216ENST00000574029 RBM46Q8TBY0 533 aaKnown RBP28.31■■■□□ 2.12
VPS53-216ENST00000574029 KDM2BQ8NHM5 1336 aa28.31■■■□□ 2.12
VPS53-216ENST00000574029 TNRC6CQ9HCJ0 1690 aaKnown RBP28.3■■■□□ 2.12
VPS53-216ENST00000574029 CARMIL3Q8ND23 1372 aa28.3■■■□□ 2.12
VPS53-216ENST00000574029 PHACTR3Q96KR7 559 aa28.3■■■□□ 2.12
VPS53-216ENST00000574029 RSPH6AQ9H0K4 717 aa28.29■■■□□ 2.12
VPS53-216ENST00000574029 ANKRD31Q8N7Z5 1873 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 PRKAR2BP31323 418 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 IL6STP40189 918 aaPredicted RBP28.28■■■□□ 2.12
VPS53-216ENST00000574029 BICDL1Q6ZP65 573 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 C2CD5Q86YS7 1000 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 TTLL6Q8N841 843 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 CFAP53Q96M91 514 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 FMNL2Q96PY5 1086 aa28.28■■■□□ 2.12
VPS53-216ENST00000574029 RASSF7Q02833 373 aa28.27■■■□□ 2.12
VPS53-216ENST00000574029 TBC1D9BQ66K14 1250 aa28.27■■■□□ 2.12
VPS53-216ENST00000574029 ZC3H4Q9UPT8 1303 aaKnown RBP28.26■■■□□ 2.11
VPS53-216ENST00000574029 H0YIN7 160 aa28.26■■■□□ 2.11
VPS53-216ENST00000574029 C16orf71Q8IYS4 520 aaPredicted RBP28.26■■■□□ 2.11
VPS53-216ENST00000574029 DNAJC5GQ8N7S2 189 aa28.25■■■□□ 2.11
VPS53-216ENST00000574029 RRAGCQ9HB90 399 aa28.25■■■□□ 2.11
VPS53-216ENST00000574029 TBC1D2BQ9UPU7 963 aa28.25■■■□□ 2.11
VPS53-216ENST00000574029 WDR90Q96KV7 1748 aa28.24■■■□□ 2.11
VPS53-216ENST00000574029 BTBD11A6QL63 1104 aa28.24■■■□□ 2.11
VPS53-216ENST00000574029 LMNB1P20700 586 aa28.24■■■□□ 2.11
VPS53-216ENST00000574029 PRELPP51888 382 aa28.24■■■□□ 2.11
VPS53-216ENST00000574029 KCNQ3O43525 872 aa28.23■■■□□ 2.11
VPS53-216ENST00000574029 A1BGP04217 495 aa28.23■■■□□ 2.11
VPS53-216ENST00000574029 FSTL1Q12841 308 aa28.23■■■□□ 2.11
VPS53-216ENST00000574029 NUDCQ9Y266 331 aa28.23■■■□□ 2.11
VPS53-216ENST00000574029 ZNF330Q9Y3S2 320 aaPredicted RBP28.23■■■□□ 2.11
VPS53-216ENST00000574029 BCORQ6W2J9 1755 aa28.22■■■□□ 2.11
VPS53-216ENST00000574029 CCDC88AQ3V6T2 1871 aa28.22■■■□□ 2.11
VPS53-216ENST00000574029 PRR5LQ6MZQ0 368 aa28.21■■■□□ 2.11
VPS53-216ENST00000574029 BRIP1Q9BX63 1249 aa28.21■■■□□ 2.11
VPS53-216ENST00000574029 PDZRN3Q9UPQ7 1066 aa28.21■■■□□ 2.11
VPS53-216ENST00000574029 COL11A2P13942 1736 aaPredicted RBP28.21■■■□□ 2.11
VPS53-216ENST00000574029 TIAM2Q8IVF5 1701 aa28.21■■■□□ 2.11
VPS53-216ENST00000574029 CAMTA2O94983 1202 aa28.2■■■□□ 2.1
VPS53-216ENST00000574029 PPP2R1AP30153 589 aa28.2■■■□□ 2.1
VPS53-216ENST00000574029 PDE6BP35913 854 aa28.2■■■□□ 2.1
VPS53-216ENST00000574029 NFKBIEO00221 500 aa28.18■■■□□ 2.1
VPS53-216ENST00000574029 U2AF1L5P0DN76 240 aaPredicted RBP28.18■■■□□ 2.1
VPS53-216ENST00000574029 U2AF1Q01081 240 aaKnown RBP eCLIP28.18■■■□□ 2.1
VPS53-216ENST00000574029 NPM2Q86SE8 214 aaKnown RBP28.17■■■□□ 2.1
VPS53-216ENST00000574029 USP16Q9Y5T5 823 aa28.17■■■□□ 2.1
VPS53-216ENST00000574029 GLTPD2A6NH11 291 aa28.16■■■□□ 2.1
VPS53-216ENST00000574029 CCDC24Q8N4L8 307 aa28.16■■■□□ 2.1
VPS53-216ENST00000574029 ZNF622Q969S3 477 aaKnown RBP eCLIP28.16■■■□□ 2.18e-8■■■■□ 21.7
VPS53-216ENST00000574029 SETDB2Q96T68 719 aa28.16■■■□□ 2.1
VPS53-216ENST00000574029 FER1L6Q2WGJ9 1857 aa28.15■■■□□ 2.1
VPS53-216ENST00000574029 MCM10Q7L590 875 aa28.15■■■□□ 2.1
VPS53-216ENST00000574029 DZIP3Q86Y13 1208 aaKnown RBP28.15■■■□□ 2.1
VPS53-216ENST00000574029 RTF1Q92541 710 aaKnown RBP28.15■■■□□ 2.1
VPS53-216ENST00000574029 PRAMEF22A3QJZ6 481 aa28.13■■■□□ 2.09
VPS53-216ENST00000574029 CNBD1Q8NA66 436 aa28.13■■■□□ 2.09
VPS53-216ENST00000574029 DICER1Q9UPY3 1922 aaKnown RBP28.13■■■□□ 2.09
VPS53-216ENST00000574029 HTATSF1O43719 755 aaKnown RBP28.12■■■□□ 2.09
VPS53-216ENST00000574029 SNRPA1P09661 255 aaKnown RBP28.12■■■□□ 2.09
VPS53-216ENST00000574029 SMC1BQ8NDV3 1235 aa28.12■■■□□ 2.09
VPS53-216ENST00000574029 ARFGEF2Q9Y6D5 1785 aa28.11■■■□□ 2.09
VPS53-216ENST00000574029 C21orf2O43822 256 aa28.11■■■□□ 2.09
VPS53-216ENST00000574029 VEGFAP15692 232 aaPredicted RBP28.11■■■□□ 2.09
VPS53-216ENST00000574029 PIP4K2AP48426 406 aaPredicted RBP28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms