RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SSFA2P28290 1259 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 FSTL1Q12841 308 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 IL17REQ8NFR9 667 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 PIGBQ92521 554 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 LGR6Q9HBX8 967 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 SIPA1L3O60292 1781 aaPredicted RBP27.02■■□□□ 1.92
VPS53-210ENST00000571456 KIAA1551Q9HCM1 1747 aa27.02■■□□□ 1.92
VPS53-210ENST00000571456 BCS1LQ9Y276 419 aa27.01■■□□□ 1.91
VPS53-210ENST00000571456 ARHGAP27Q6ZUM4 889 aa27■■□□□ 1.91
VPS53-210ENST00000571456 NFATC2IPQ8NCF5 419 aa27■■□□□ 1.91
VPS53-210ENST00000571456 APAF1O14727 1248 aa26.99■■□□□ 1.91
VPS53-210ENST00000571456 TGFB2P61812 414 aa26.97■■□□□ 1.91
VPS53-210ENST00000571456 ZNF831Q5JPB2 1677 aa26.96■■□□□ 1.91
VPS53-210ENST00000571456 CALD1Q05682 793 aaKnown RBP26.96■■□□□ 1.91
VPS53-210ENST00000571456 CCDC27Q2M243 656 aa26.96■■□□□ 1.91
VPS53-210ENST00000571456 MMP10P09238 476 aa26.95■■□□□ 1.9
VPS53-210ENST00000571456 MCM10Q7L590 875 aa26.95■■□□□ 1.9
VPS53-210ENST00000571456 BABAM1Q9NWV8 329 aa26.95■■□□□ 1.9
VPS53-210ENST00000571456 A0A0G2JLW4 131 aa26.94■■□□□ 1.9
VPS53-210ENST00000571456 BRCA1P38398 1863 aaKnown RBP26.93■■□□□ 1.9
VPS53-210ENST00000571456 TAF7Q15545 349 aaPredicted RBP26.93■■□□□ 1.9
VPS53-210ENST00000571456 NEUROD2Q15784 382 aa26.93■■□□□ 1.9
VPS53-210ENST00000571456 ATG3Q9NT62 314 aa26.93■■□□□ 1.9
VPS53-210ENST00000571456 C9orf131Q5VYM1 1079 aa26.92■■□□□ 1.9
VPS53-210ENST00000571456 LINC00116Q8NCU8 138 aa26.92■■□□□ 1.9
VPS53-210ENST00000571456 RRP7AQ9Y3A4 280 aaKnown RBP26.92■■□□□ 1.9
VPS53-210ENST00000571456 TTC5Q8N0Z6 440 aa26.91■■□□□ 1.9
VPS53-210ENST00000571456 TRIM35Q9UPQ4 493 aa26.91■■□□□ 1.9
VPS53-210ENST00000571456 KDM2BQ8NHM5 1336 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 ARFGEF1Q9Y6D6 1849 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 UBR2Q8IWV8 1755 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 GNPATO15228 680 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 DCTN1Q14203 1278 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 ASAP1Q9ULH1 1129 aa26.9■■□□□ 1.9
VPS53-210ENST00000571456 LOC102724428A0A0B4J2F2 783 aa26.89■■□□□ 1.9
VPS53-210ENST00000571456 BTBD11A6QL63 1104 aa26.89■■□□□ 1.9
VPS53-210ENST00000571456 SIK1P57059 783 aa26.89■■□□□ 1.9
VPS53-210ENST00000571456 KCPQ6ZWJ8 1503 aa26.89■■□□□ 1.89
VPS53-210ENST00000571456 C10orf71Q711Q0 1435 aa26.89■■□□□ 1.89
VPS53-210ENST00000571456 TNRC6CQ9HCJ0 1690 aaKnown RBP26.87■■□□□ 1.89
VPS53-210ENST00000571456 DPEP1P16444 411 aa26.87■■□□□ 1.89
VPS53-210ENST00000571456 ZNF790Q6PG37 636 aa26.87■■□□□ 1.89
VPS53-210ENST00000571456 VSIG10Q8N0Z9 540 aa26.86■■□□□ 1.89
VPS53-210ENST00000571456 KDM3BQ7LBC6 1761 aa26.86■■□□□ 1.89
VPS53-210ENST00000571456 HSPA1AP0DMV8 641 aaKnown RBP26.85■■□□□ 1.89
VPS53-210ENST00000571456 HSPA1BP0DMV9 641 aaKnown RBP26.85■■□□□ 1.89
VPS53-210ENST00000571456 SMC1BQ8NDV3 1235 aa26.85■■□□□ 1.89
VPS53-210ENST00000571456 RRAGCQ9HB90 399 aa26.85■■□□□ 1.89
VPS53-210ENST00000571456 NLGN1Q8N2Q7 840 aa26.84■■□□□ 1.89
VPS53-210ENST00000571456 WWC1Q8IX03 1113 aa26.83■■□□□ 1.89
VPS53-210ENST00000571456 FMNL2Q96PY5 1086 aa26.83■■□□□ 1.89
VPS53-210ENST00000571456 CCDC87Q9NVE4 849 aa26.83■■□□□ 1.89
VPS53-210ENST00000571456 IL16Q14005 1332 aa26.83■■□□□ 1.89
VPS53-210ENST00000571456 ITPK1Q13572 414 aa26.82■■□□□ 1.88
VPS53-210ENST00000571456 CFAP44Q96MT7 982 aa26.82■■□□□ 1.88
VPS53-210ENST00000571456 THUMPD2Q9BTF0 503 aaKnown RBP26.82■■□□□ 1.88
VPS53-210ENST00000571456 TEX13AQ9BXU3 409 aaPredicted RBP26.82■■□□□ 1.88
VPS53-210ENST00000571456 SBF1O95248 1867 aa26.82■■□□□ 1.88
VPS53-210ENST00000571456 C4AP0C0L4 1744 aa26.82■■□□□ 1.88
VPS53-210ENST00000571456 ATP6V1AP38606 617 aa26.81■■□□□ 1.88
VPS53-210ENST00000571456 GNAI1P63096 354 aa26.81■■□□□ 1.88
VPS53-210ENST00000571456 WDR63Q8IWG1 891 aa26.81■■□□□ 1.88
VPS53-210ENST00000571456 RBM42Q9BTD8 480 aaKnown RBP26.81■■□□□ 1.88
VPS53-210ENST00000571456 IFT57Q9NWB7 429 aa26.81■■□□□ 1.88
VPS53-210ENST00000571456 SLC39A6Q13433 755 aa26.8■■□□□ 1.88
VPS53-210ENST00000571456 RNF181Q9P0P0 153 aa26.8■■□□□ 1.88
VPS53-210ENST00000571456 CHL1O00533 1208 aa26.79■■□□□ 1.88
VPS53-210ENST00000571456 TSPYL4Q9UJ04 414 aa26.79■■□□□ 1.88
VPS53-210ENST00000571456 PTCD1O75127 700 aaKnown RBP26.78■■□□□ 1.88
VPS53-210ENST00000571456 KCNA3P22001 575 aa26.78■■□□□ 1.88
VPS53-210ENST00000571456 TRAPPC3LQ5T215 181 aa26.78■■□□□ 1.88
VPS53-210ENST00000571456 HEG1Q9ULI3 1381 aa26.78■■□□□ 1.88
VPS53-210ENST00000571456 COL5A3P25940 1745 aaPredicted RBP26.77■■□□□ 1.88
VPS53-210ENST00000571456 SLC34A2O95436 690 aa26.77■■□□□ 1.88
VPS53-210ENST00000571456 PIM2Q9P1W9 311 aa26.77■■□□□ 1.88
VPS53-210ENST00000571456 ZNF853P0CG23 659 aa26.76■■□□□ 1.87
VPS53-210ENST00000571456 ZNF496Q96IT1 587 aaPredicted RBP26.76■■□□□ 1.87
VPS53-210ENST00000571456 RTCBQ9Y3I0 505 aaKnown RBP26.76■■□□□ 1.87
VPS53-210ENST00000571456 TJP1Q07157 1748 aa26.76■■□□□ 1.87
VPS53-210ENST00000571456 PARP3Q9Y6F1 533 aa26.75■■□□□ 1.87
VPS53-210ENST00000571456 SNRPA1P09661 255 aaKnown RBP26.74■■□□□ 1.87
VPS53-210ENST00000571456 DALRD3Q5D0E6 543 aaKnown RBP26.74■■□□□ 1.87
VPS53-210ENST00000571456 RC3H1Q5TC82 1133 aaKnown RBP26.74■■□□□ 1.87
VPS53-210ENST00000571456 CNTNAP4Q9C0A0 1308 aa26.73■■□□□ 1.87
VPS53-210ENST00000571456 STARD3NLO95772 234 aa26.73■■□□□ 1.87
VPS53-210ENST00000571456 SLC4A9Q96Q91 983 aa26.73■■□□□ 1.87
VPS53-210ENST00000571456 GYS1P13807 737 aa26.72■■□□□ 1.87
VPS53-210ENST00000571456 EIF4A1P60842 406 aaKnown RBP26.72■■□□□ 1.87
VPS53-210ENST00000571456 ZNF521Q96K83 1311 aa26.71■■□□□ 1.87
VPS53-210ENST00000571456 ADRA2BP18089 450 aa26.71■■□□□ 1.87
VPS53-210ENST00000571456 ARHGEF1Q92888 912 aaKnown RBP26.71■■□□□ 1.87
VPS53-210ENST00000571456 CHMP4AQ9BY43 222 aa26.71■■□□□ 1.87
VPS53-210ENST00000571456 MIS18AQ9NYP9 233 aa26.71■■□□□ 1.87
VPS53-210ENST00000571456 SOS1Q07889 1333 aaPredicted RBP26.7■■□□□ 1.87
VPS53-210ENST00000571456 KCNQ3O43525 872 aa26.7■■□□□ 1.86
VPS53-210ENST00000571456 LAS1LQ9Y4W2 734 aaKnown RBP26.7■■□□□ 1.86
VPS53-210ENST00000571456 LAMB4A4D0S4 1761 aa26.7■■□□□ 1.86
VPS53-210ENST00000571456 HOXB7P09629 217 aa26.69■■□□□ 1.86
VPS53-210ENST00000571456 SALL2Q9Y467 1007 aaPredicted RBP26.69■■□□□ 1.86
VPS53-210ENST00000571456 RFC4P35249 363 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms