RNA–Protein interactions for RNA: ENST00000569429.5

HERPUD1-217, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 562 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-217ENST00000569429 DDX21Q9NR30 783 aaKnown RBP eCLIP9.65□□□□□ -0.86
HERPUD1-217ENST00000569429 CNTNAP4Q9C0A0 1308 aa9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 LTBP3Q9NS15 1303 aa9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 POLRMTO00411 1230 aaKnown RBP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 CYP27B1O15528 508 aa9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 TATP17735 454 aaPredicted RBP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 BRPF1P55201 1214 aaPredicted RBP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 EAPPQ56P03 285 aaPredicted RBP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 PAXIP1Q6ZW49 1069 aaPredicted RBP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 CLEC11AQ9Y240 323 aa9.64□□□□□ -0.87
HERPUD1-217ENST00000569429 PITPNM2Q9BZ72 1349 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 AOC2O75106 756 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 TM4SF1P30408 202 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 HOXC9P31274 260 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 FKBP8Q14318 412 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 NKX1-1Q15270 411 aaPredicted RBP9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 NBPF6Q5VWK0 638 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 MAP1SQ66K74 1059 aaPredicted RBP9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 PNMA8AQ86V59 439 aaPredicted RBP9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 NBPF4Q96M43 638 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 ASAP1Q9ULH1 1129 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 KDRP35968 1356 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 SBNO2Q9Y2G9 1366 aa9.63□□□□□ -0.87
HERPUD1-217ENST00000569429 GRM1Q13255 1194 aa9.62□□□□□ -0.87
HERPUD1-217ENST00000569429 SLC17A8Q8NDX2 589 aa9.62□□□□□ -0.87
HERPUD1-217ENST00000569429 HACL1Q9UJ83 578 aa9.62□□□□□ -0.87
HERPUD1-217ENST00000569429 TLL2Q9Y6L7 1015 aa9.62□□□□□ -0.87
HERPUD1-217ENST00000569429 USP42Q9H9J4 1324 aaKnown RBP9.61□□□□□ -0.87
HERPUD1-217ENST00000569429 EPHX2P34913 555 aa9.61□□□□□ -0.87
HERPUD1-217ENST00000569429 CACNA1SQ13698 1873 aa9.61□□□□□ -0.87
HERPUD1-217ENST00000569429 SLC4A9Q96Q91 983 aa9.6□□□□□ -0.87
HERPUD1-217ENST00000569429 TAOK3Q9H2K8 898 aa9.6□□□□□ -0.87
HERPUD1-217ENST00000569429 ATG3Q9NT62 314 aa9.6□□□□□ -0.87
HERPUD1-217ENST00000569429 TMOD3Q9NYL9 352 aa9.6□□□□□ -0.87
HERPUD1-217ENST00000569429 INSRP06213 1382 aa9.6□□□□□ -0.87
HERPUD1-217ENST00000569429 SLX4Q8IY92 1834 aa9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 CST9Q5W186 159 aa9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 USHBP1Q8N6Y0 703 aa9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 HHIPL1Q96JK4 782 aa9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 SRP68Q9UHB9 627 aaKnown RBP9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 ANKRD31Q8N7Z5 1873 aa9.59□□□□□ -0.87
HERPUD1-217ENST00000569429 RANBP2P49792 3224 aaKnown RBP9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 H0YIN7 160 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 AMPHP49418 695 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 CIAPIN1Q6FI81 312 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 C2CD5Q86YS7 1000 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 CENPFP49454 3210 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 ARFGEF2Q9Y6D5 1785 aa9.58□□□□□ -0.88
HERPUD1-217ENST00000569429 C21orf2O43822 256 aa9.57□□□□□ -0.88
HERPUD1-217ENST00000569429 SAPCD2Q86UD0 394 aa9.57□□□□□ -0.88
HERPUD1-217ENST00000569429 BRCA2P51587 3418 aa9.57□□□□□ -0.88
HERPUD1-217ENST00000569429 EDC4Q6P2E9 1401 aaKnown RBP9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 RTL1A6NKG5 1358 aa9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 FMR1Q06787 632 aaKnown RBP eCLIP9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 CTU1Q7Z7A3 348 aaKnown RBP9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 SAGE1Q9NXZ1 904 aa9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 PDZRN3Q9UPQ7 1066 aa9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 HPS5Q9UPZ3 1129 aa9.56□□□□□ -0.88
HERPUD1-217ENST00000569429 UNC80Q8N2C7 3258 aa9.55□□□□□ -0.88
HERPUD1-217ENST00000569429 COL11A2P13942 1736 aaPredicted RBP9.55□□□□□ -0.88
HERPUD1-217ENST00000569429 RNF123Q5XPI4 1314 aa9.55□□□□□ -0.88
HERPUD1-217ENST00000569429 MNX1P50219 401 aaPredicted RBP9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 NOGQ13253 232 aa9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 NFIXQ14938 502 aa9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 PKN2Q16513 984 aaKnown RBP9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 PPARGC1BQ86YN6 1023 aaKnown RBP9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 RBM42Q9BTD8 480 aaKnown RBP9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 ZNF541Q9H0D2 1346 aa9.54□□□□□ -0.88
HERPUD1-217ENST00000569429 SERPINB2P05120 415 aa9.53□□□□□ -0.88
HERPUD1-217ENST00000569429 CRKLP46109 303 aaKnown RBP9.53□□□□□ -0.88
HERPUD1-217ENST00000569429 SOGA3Q5TF21 947 aa9.53□□□□□ -0.88
HERPUD1-217ENST00000569429 ZNF622Q969S3 477 aaKnown RBP eCLIP9.53□□□□□ -0.886e-11■□□□□ 10.9
HERPUD1-217ENST00000569429 SCN11AQ9UI33 1791 aa9.52□□□□□ -0.88
HERPUD1-217ENST00000569429 CARMIL3Q8ND23 1372 aa9.52□□□□□ -0.88
HERPUD1-217ENST00000569429 TRAF5O00463 557 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 ZPR1O75312 459 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 FBLN1P23142 703 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 AKAP4Q5JQC9 854 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 USPL1Q5W0Q7 1092 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 HDGFL2Q7Z4V5 671 aaPredicted RBP9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 ZIC5Q96T25 663 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 SPG7Q9UQ90 795 aa9.52□□□□□ -0.89
HERPUD1-217ENST00000569429 HTTP42858 3142 aa9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 RBBP6Q7Z6E9 1792 aaKnown RBP9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 FZD9O00144 591 aa9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 GPC2Q8N158 579 aa9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 COLQQ9Y215 455 aaPredicted RBP9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 POLR2AP24928 1970 aaKnown RBP9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 TJP1Q07157 1748 aa9.51□□□□□ -0.89
HERPUD1-217ENST00000569429 NCAPD2Q15021 1401 aa9.5□□□□□ -0.89
HERPUD1-217ENST00000569429 VCANP13611 3396 aa9.5□□□□□ -0.89
HERPUD1-217ENST00000569429 IFNL2Q8IZJ0 200 aa9.5□□□□□ -0.89
HERPUD1-217ENST00000569429 COG3Q96JB2 828 aa9.5□□□□□ -0.89
HERPUD1-217ENST00000569429 LAMA3Q16787 3333 aa9.5□□□□□ -0.89
HERPUD1-217ENST00000569429 ERVV-2B6SEH9 535 aa9.49□□□□□ -0.89
HERPUD1-217ENST00000569429 CELF2O95319 508 aaKnown RBP9.49□□□□□ -0.89
HERPUD1-217ENST00000569429 PHKG2P15735 406 aa9.49□□□□□ -0.89
HERPUD1-217ENST00000569429 PDE6BP35913 854 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms