RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	MICALL1	Q8N3F8	863 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	PYM1	Q9BRP8	204 aa	Known RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	BATF3	Q9NR55	127 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	RAB11FIP3	O75154	756 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	MCTP2	Q6DN12	878 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	ESF1	Q9H501	851 aa	Known RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	PSD3	Q9NYI0	1048 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	ANKS4B	Q8N8V4	417 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	RABGGTA	Q92696	567 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	BCL2L12	Q9HB09	334 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	GNAI3	P08754	354 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	GNAI1	P63096	354 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	DBN1	Q16643	649 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	SRGAP3	O43295	1099 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	IRX5	P78411	483 aa	Predicted RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	CCDC27	Q2M243	656 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	KANK3	Q6NY19	840 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	ZFP91	Q96JP5	570 aa	Predicted RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	ZNF830	Q96NB3	372 aa	Predicted RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	SLC8A1	P32418	973 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	MMS22L	Q6ZRQ5	1243 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	YEATS4	O95619	227 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	EFCAB8	A8MWE9	144 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	RPUSD2	Q8IZ73	545 aa	Known RBP	4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	SSFA2	P28290	1259 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	KRT32	Q14532	448 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	RILPL2	Q969X0	211 aa		4.94	□□□□□ -1.62
MACF1-231	ENST00000564288	IFFO1	Q0D2I5	559 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CENPH	Q9H3R5	247 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	SATB1	Q01826	763 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	GORAB	Q5T7V8	394 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	USP26	Q9BXU7	913 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	MED4	Q9NPJ6	270 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	FBXO3	Q9UK99	471 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	SAFB	Q15424	915 aa	Known RBP eCLIP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	EHBP1	Q8NDI1	1231 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	RNF187	Q5TA31	235 aa	Predicted RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CCDC121	Q6ZUS5	278 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	PCDHB15	Q9Y5E8	787 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	PAFAH1B1	P43034	410 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	RBM6	P78332	1123 aa	Known RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	U2AF2	P26368	475 aa	Known RBP eCLIP	4.93	□□□□□ -1.62	5e-9	■■■□□ 17.7
MACF1-231	ENST00000564288	TRAF1	Q13077	416 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	RAD50	Q92878	1312 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	UHRF1BP1L	A0JNW5	1464 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	NBPF9	Q3BBW0	867 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	TRMT1	Q9NXH9	659 aa	Known RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CTAGE15	A4D2H0	777 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CTAGE8	P0CG41	777 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CTAGE6	Q86UF2	777 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CTAGE4	Q8IX94	777 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	KIF3B	O15066	747 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	IRX1	P78414	480 aa	Predicted RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	PDRG1	Q9NUG6	133 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	ENOX2	Q16206	610 aa	Known RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	PDLIM2	Q96JY6	352 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	SLFN14	P0C7P3	912 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	TOMM22	Q9NS69	142 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	CTAGE9	A4FU28	777 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	TRIM29	Q14134	588 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	MMP14	P50281	582 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	AP1AR	Q63HQ0	302 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	C20orf194	Q5TEA3	1177 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	GOLGA1	Q92805	767 aa		4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	NAA15	Q9BXJ9	866 aa	Known RBP	4.93	□□□□□ -1.62
MACF1-231	ENST00000564288	FCHSD2	O94868	740 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CHUK	O15111	745 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	SH3GL3	Q99963	347 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	EVC2	Q86UK5	1308 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	HNRNPM	P52272	730 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	ARHGAP31	Q2M1Z3	1444 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CAST	P20810	708 aa	Known RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	KIF24	Q5T7B8	1368 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	KDM2B	Q8NHM5	1336 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	MAP2K1	Q02750	393 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CROCCP2	Q86T23	111 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	APLF	Q8IW19	511 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	NBPF3	Q9H094	633 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	GNAI2	P04899	355 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	ETF1	P62495	437 aa	Known RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	C16orf45	Q96MC5	204 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	ZNF75D	P51815	510 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	VCX	Q9H320	206 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CCDC40	Q4G0X9	1142 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CEP57	Q86XR8	500 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	SPECC1L	Q69YQ0	1117 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	NEBL	O76041	1014 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	SEC24B	O95487	1268 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	TBC1D9	Q6ZT07	1266 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CXorf56	Q9H5V9	222 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	SPATS2L	Q9NUQ6	558 aa	Known RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	MAPK8IP2	Q13387	824 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	ABCA5	Q8WWZ7	1642 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	KIF14	Q15058	1648 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	SAAL1	Q96ER3	474 aa		4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	RBM33	Q96EV2	1170 aa	Known RBP	4.92	□□□□□ -1.62
MACF1-231	ENST00000564288	CTNNA3	Q9UI47	895 aa		4.92	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms