RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TGFB2P61812 414 aa22.36■■□□□ 1.17
CLK3-210ENST00000563112 FKBP8Q14318 412 aa22.36■■□□□ 1.17
CLK3-210ENST00000563112 USPL1Q5W0Q7 1092 aa22.36■■□□□ 1.17
CLK3-210ENST00000563112 MCM10Q7L590 875 aa22.36■■□□□ 1.17
CLK3-210ENST00000563112 ZNF784Q8NCA9 323 aaPredicted RBP22.35■■□□□ 1.17
CLK3-210ENST00000563112 NARFQ9UHQ1 456 aa22.35■■□□□ 1.17
CLK3-210ENST00000563112 COL15A1P39059 1388 aa22.35■■□□□ 1.17
CLK3-210ENST00000563112 A0A087WZG4 1122 aa22.34■■□□□ 1.17
CLK3-210ENST00000563112 NPM2Q86SE8 214 aaKnown RBP22.33■■□□□ 1.17
CLK3-210ENST00000563112 WWC3Q9ULE0 1092 aa22.33■■□□□ 1.17
CLK3-210ENST00000563112 C10orf71Q711Q0 1435 aa22.32■■□□□ 1.16
CLK3-210ENST00000563112 DCTN1Q14203 1278 aa22.32■■□□□ 1.16
CLK3-210ENST00000563112 MAPK8IP3Q9UPT6 1336 aa22.31■■□□□ 1.16
CLK3-210ENST00000563112 KIF13BQ9NQT8 1826 aa22.31■■□□□ 1.16
CLK3-210ENST00000563112 KCNQ3O43525 872 aa22.31■■□□□ 1.16
CLK3-210ENST00000563112 TM4SF1P30408 202 aa22.31■■□□□ 1.16
CLK3-210ENST00000563112 GOLGB1Q14789 3259 aaKnown RBP22.31■■□□□ 1.16
CLK3-210ENST00000563112 A0A0G2JLW4 131 aa22.3■■□□□ 1.16
CLK3-210ENST00000563112 EIF5P55010 431 aaKnown RBP22.3■■□□□ 1.16
CLK3-210ENST00000563112 DDR1Q08345 913 aa22.3■■□□□ 1.16
CLK3-210ENST00000563112 TAF7Q15545 349 aaPredicted RBP22.3■■□□□ 1.16
CLK3-210ENST00000563112 PXDNLA1KZ92 1463 aa22.29■■□□□ 1.16
CLK3-210ENST00000563112 PLEKHF1Q96S99 279 aa22.29■■□□□ 1.16
CLK3-210ENST00000563112 ZNF330Q9Y3S2 320 aaPredicted RBP22.29■■□□□ 1.16
CLK3-210ENST00000563112 MYBBP1AQ9BQG0 1328 aaKnown RBP22.29■■□□□ 1.16
CLK3-210ENST00000563112 POLRMTO00411 1230 aaKnown RBP22.28■■□□□ 1.16
CLK3-210ENST00000563112 IL6STP40189 918 aaPredicted RBP22.28■■□□□ 1.16
CLK3-210ENST00000563112 NFE2L2Q16236 605 aa22.28■■□□□ 1.16
CLK3-210ENST00000563112 SNRPA1P09661 255 aaKnown RBP22.27■■□□□ 1.16
CLK3-210ENST00000563112 DPEP1P16444 411 aa22.27■■□□□ 1.16
CLK3-210ENST00000563112 ZEB1P37275 1124 aaPredicted RBP22.27■■□□□ 1.16
CLK3-210ENST00000563112 PNISRQ8TF01 805 aaKnown RBP22.27■■□□□ 1.16
CLK3-210ENST00000563112 N4BP2Q86UW6 1770 aaPredicted RBP22.26■■□□□ 1.15
CLK3-210ENST00000563112 A1BGP04217 495 aa22.26■■□□□ 1.15
CLK3-210ENST00000563112 NFIXQ14938 502 aa22.26■■□□□ 1.15
CLK3-210ENST00000563112 BCS1LQ9Y276 419 aa22.26■■□□□ 1.15
CLK3-210ENST00000563112 BCL2L12Q9HB09 334 aa22.25■■□□□ 1.15
CLK3-210ENST00000563112 USP16Q9Y5T5 823 aa22.25■■□□□ 1.15
CLK3-210ENST00000563112 DLG5Q8TDM6 1919 aa22.24■■□□□ 1.15
CLK3-210ENST00000563112 TBC1D2BQ9UPU7 963 aa22.24■■□□□ 1.15
CLK3-210ENST00000563112 KIAA1551Q9HCM1 1747 aa22.23■■□□□ 1.15
CLK3-210ENST00000563112 SERPINB2P05120 415 aa22.23■■□□□ 1.15
CLK3-210ENST00000563112 MIS18AQ9NYP9 233 aa22.23■■□□□ 1.15
CLK3-210ENST00000563112 PIM2Q9P1W9 311 aa22.23■■□□□ 1.15
CLK3-210ENST00000563112 BICDL1Q6ZP65 573 aa22.22■■□□□ 1.15
CLK3-210ENST00000563112 PRAMEF22A3QJZ6 481 aa22.2■■□□□ 1.14
CLK3-210ENST00000563112 WDR43Q15061 677 aaKnown RBP eCLIP22.2■■□□□ 1.14
CLK3-210ENST00000563112 DZIP3Q86Y13 1208 aaKnown RBP22.2■■□□□ 1.14
CLK3-210ENST00000563112 KCNA3P22001 575 aa22.19■■□□□ 1.14
CLK3-210ENST00000563112 RIPK4P57078 832 aa22.19■■□□□ 1.14
CLK3-210ENST00000563112 DALRD3Q5D0E6 543 aaKnown RBP22.19■■□□□ 1.14
CLK3-210ENST00000563112 ARHGAP27Q6ZUM4 889 aa22.19■■□□□ 1.14
CLK3-210ENST00000563112 AFDNP55196 1824 aaKnown RBP22.18■■□□□ 1.14
CLK3-210ENST00000563112 CHRNA5P30532 468 aa22.18■■□□□ 1.14
CLK3-210ENST00000563112 LMOD3Q0VAK6 560 aa22.18■■□□□ 1.14
CLK3-210ENST00000563112 TBC1D9BQ66K14 1250 aa22.18■■□□□ 1.14
CLK3-210ENST00000563112 THUMPD2Q9BTF0 503 aaKnown RBP22.18■■□□□ 1.14
CLK3-210ENST00000563112 PIP4K2AP48426 406 aaPredicted RBP22.17■■□□□ 1.14
CLK3-210ENST00000563112 PRKRIP1Q9H875 184 aaPredicted RBP22.17■■□□□ 1.14
CLK3-210ENST00000563112 ATP10DQ9P241 1426 aa22.16■■□□□ 1.14
CLK3-210ENST00000563112 CAMTA2O94983 1202 aa22.16■■□□□ 1.14
CLK3-210ENST00000563112 SETDB2Q96T68 719 aa22.16■■□□□ 1.14
CLK3-210ENST00000563112 NRXN2Q9P2S2 1712 aa22.16■■□□□ 1.14
CLK3-210ENST00000563112 SCN7AQ01118 1682 aa22.16■■□□□ 1.14
CLK3-210ENST00000563112 BRCA1P38398 1863 aaKnown RBP22.15■■□□□ 1.14
CLK3-210ENST00000563112 GIGYF1O75420 1035 aaPredicted RBP22.15■■□□□ 1.14
CLK3-210ENST00000563112 TMPOP42166 694 aaKnown RBP22.15■■□□□ 1.14
CLK3-210ENST00000563112 ZNF652Q9Y2D9 606 aa22.15■■□□□ 1.14
CLK3-210ENST00000563112 CARMIL3Q8ND23 1372 aa22.14■■□□□ 1.14
CLK3-210ENST00000563112 NPHP1O15259 732 aa22.14■■□□□ 1.13
CLK3-210ENST00000563112 EIF4A1P60842 406 aaKnown RBP22.14■■□□□ 1.13
CLK3-210ENST00000563112 CLEC4GQ6UXB4 293 aa22.14■■□□□ 1.13
CLK3-210ENST00000563112 KDM3BQ7LBC6 1761 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 NBPF26B4DH59 902 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 H0YIN7 160 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 NBPF10Q6P3W6 841 aaKnown RBP22.13■■□□□ 1.13
CLK3-210ENST00000563112 C2CD5Q86YS7 1000 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 CCDC146Q8IYE0 955 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 NBPF15Q8N660 670 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 RUNDC1Q96C34 613 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 GPBP1L1Q9HC44 474 aaPredicted RBP22.13■■□□□ 1.13
CLK3-210ENST00000563112 TSPYL4Q9UJ04 414 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 PDZRN3Q9UPQ7 1066 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 ARFGEF1Q9Y6D6 1849 aa22.13■■□□□ 1.13
CLK3-210ENST00000563112 ADCY9O60503 1353 aa22.12■■□□□ 1.13
CLK3-210ENST00000563112 PDE6BP35913 854 aa22.11■■□□□ 1.13
CLK3-210ENST00000563112 NEUROD2Q15784 382 aa22.11■■□□□ 1.13
CLK3-210ENST00000563112 BABAM1Q9NWV8 329 aa22.11■■□□□ 1.13
CLK3-210ENST00000563112 LAMB4A4D0S4 1761 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 RGL2O15211 777 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 PRR5LQ6MZQ0 368 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 TTLL6Q8N841 843 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 CNBD1Q8NA66 436 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 BRIP1Q9BX63 1249 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 ADAMTS8Q9UP79 889 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 RRP7AQ9Y3A4 280 aaKnown RBP22.1■■□□□ 1.13
CLK3-210ENST00000563112 BCORQ6W2J9 1755 aa22.1■■□□□ 1.13
CLK3-210ENST00000563112 C1QTNF8P60827 252 aa22.09■■□□□ 1.13
CLK3-210ENST00000563112 ST5P78524 1137 aa22.09■■□□□ 1.13
CLK3-210ENST00000563112 ZNF526Q8TF50 670 aaPredicted RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms