RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CCT4P50991 539 aaKnown RBP26.86■■□□□ 1.89
CLN3-209ENST00000561689 PDIA6Q15084 440 aa26.85■■□□□ 1.89
CLN3-209ENST00000561689 DDX21Q9NR30 783 aaKnown RBP eCLIP26.84■■□□□ 1.89
CLN3-209ENST00000561689 MARCH10Q8NA82 808 aaPredicted RBP26.84■■□□□ 1.89
CLN3-209ENST00000561689 SYTL4Q96C24 671 aaPredicted RBP26.83■■□□□ 1.89
CLN3-209ENST00000561689 HYPKQ9NX55 129 aa26.83■■□□□ 1.89
CLN3-209ENST00000561689 ASAP1Q9ULH1 1129 aa26.83■■□□□ 1.89
CLN3-209ENST00000561689 C5P01031 1676 aa26.83■■□□□ 1.88
CLN3-209ENST00000561689 PI4KAP2A4QPH2 592 aa26.82■■□□□ 1.88
CLN3-209ENST00000561689 MYL6BP14649 208 aa26.82■■□□□ 1.88
CLN3-209ENST00000561689 PI4KAP1Q8N8J0 262 aa26.82■■□□□ 1.88
CLN3-209ENST00000561689 MEIS3Q99687 375 aa26.82■■□□□ 1.88
CLN3-209ENST00000561689 HDAC1Q13547 482 aaPredicted RBP26.81■■□□□ 1.88
CLN3-209ENST00000561689 CACNA1FO60840 1977 aa26.81■■□□□ 1.88
CLN3-209ENST00000561689 PIP4K2AP48426 406 aaPredicted RBP26.8■■□□□ 1.88
CLN3-209ENST00000561689 PRIM1P49642 420 aaKnown RBP26.8■■□□□ 1.88
CLN3-209ENST00000561689 ATG3Q9NT62 314 aa26.8■■□□□ 1.88
CLN3-209ENST00000561689 KCPQ6ZWJ8 1503 aa26.8■■□□□ 1.88
CLN3-209ENST00000561689 AIMP1Q12904 312 aaKnown RBP26.79■■□□□ 1.88
CLN3-209ENST00000561689 GLI3P10071 1580 aa26.79■■□□□ 1.88
CLN3-209ENST00000561689 AFF2P51816 1311 aa26.79■■□□□ 1.88
CLN3-209ENST00000561689 DNAAF4Q8WXU2 420 aa26.78■■□□□ 1.88
CLN3-209ENST00000561689 A0A0G2JS52 829 aa26.78■■□□□ 1.88
CLN3-209ENST00000561689 BCL9O00512 1426 aa26.78■■□□□ 1.88
CLN3-209ENST00000561689 MYT1Q01538 1121 aa26.78■■□□□ 1.88
CLN3-209ENST00000561689 ADCY9O60503 1353 aa26.78■■□□□ 1.88
CLN3-209ENST00000561689 PAPPAQ13219 1627 aa26.77■■□□□ 1.88
CLN3-209ENST00000561689 ACSBG1Q96GR2 724 aa26.77■■□□□ 1.88
CLN3-209ENST00000561689 SIRT2Q8IXJ6 389 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 MAP3K2Q9Y2U5 619 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 UBR2Q8IWV8 1755 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 PXDNLA1KZ92 1463 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 KSR2Q6VAB6 950 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 XAGE3Q8WTP9 111 aa26.75■■□□□ 1.87
CLN3-209ENST00000561689 RBM42Q9BTD8 480 aaKnown RBP26.75■■□□□ 1.87
CLN3-209ENST00000561689 COPS6Q7L5N1 327 aa26.74■■□□□ 1.87
CLN3-209ENST00000561689 LRP10Q7Z4F1 713 aa26.74■■□□□ 1.87
CLN3-209ENST00000561689 SRCIN1Q9C0H9 1055 aa26.74■■□□□ 1.87
CLN3-209ENST00000561689 BEND3Q5T5X7 828 aa26.73■■□□□ 1.87
CLN3-209ENST00000561689 DDX58O95786 925 aaKnown RBP26.73■■□□□ 1.87
CLN3-209ENST00000561689 GJD4Q96KN9 370 aaPredicted RBP26.72■■□□□ 1.87
CLN3-209ENST00000561689 ITGB4P16144 1822 aa26.72■■□□□ 1.87
CLN3-209ENST00000561689 NBPF26B4DH59 902 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 A1BGP04217 495 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 RGS3P49796 1198 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 NBPF14Q5TI25 921 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 NBPF10Q6P3W6 841 aaKnown RBP26.71■■□□□ 1.87
CLN3-209ENST00000561689 NBPF15Q8N660 670 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 USP44Q9H0E7 712 aa26.71■■□□□ 1.87
CLN3-209ENST00000561689 PDZRN3Q9UPQ7 1066 aa26.7■■□□□ 1.86
CLN3-209ENST00000561689 KAT6BQ8WYB5 2073 aa26.7■■□□□ 1.86
CLN3-209ENST00000561689 RIC3Q7Z5B4 369 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 DNAJC10Q8IXB1 793 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 VSIG10Q8N0Z9 540 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.69■■□□□ 1.86
CLN3-209ENST00000561689 GNAI3P08754 354 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 CEP85Q6P2H3 762 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 SMC5Q8IY18 1101 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 DOT1LQ8TEK3 1739 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 ERBB4Q15303 1308 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 ATP10DQ9P241 1426 aa26.69■■□□□ 1.86
CLN3-209ENST00000561689 GNAI2P04899 355 aa26.68■■□□□ 1.86
CLN3-209ENST00000561689 ANKRD44Q8N8A2 993 aa26.67■■□□□ 1.86
CLN3-209ENST00000561689 SLC4A9Q96Q91 983 aa26.67■■□□□ 1.86
CLN3-209ENST00000561689 TRPC5Q9UL62 973 aaPredicted RBP26.67■■□□□ 1.86
CLN3-209ENST00000561689 LAMB4A4D0S4 1761 aa26.67■■□□□ 1.86
CLN3-209ENST00000561689 RPAP2Q8IXW5 612 aaPredicted RBP26.67■■□□□ 1.86
CLN3-209ENST00000561689 KCNQ2O43526 872 aa26.66■■□□□ 1.86
CLN3-209ENST00000561689 ANKRD13DQ6ZTN6 518 aa26.66■■□□□ 1.86
CLN3-209ENST00000561689 TEX13AQ9BXU3 409 aaPredicted RBP26.66■■□□□ 1.86
CLN3-209ENST00000561689 UBTFL1P0CB47 393 aaPredicted RBP26.65■■□□□ 1.86
CLN3-209ENST00000561689 CWF19L2Q2TBE0 894 aaKnown RBP26.65■■□□□ 1.86
CLN3-209ENST00000561689 ATRNO75882 1429 aa26.65■■□□□ 1.86
CLN3-209ENST00000561689 LRRFIP2Q9Y608 721 aaKnown RBP26.64■■□□□ 1.85
CLN3-209ENST00000561689 STARD3NLO95772 234 aa26.63■■□□□ 1.85
CLN3-209ENST00000561689 NBPF7P0C2Y1 421 aaPredicted RBP26.63■■□□□ 1.85
CLN3-209ENST00000561689 LINS1Q8NG48 757 aa26.63■■□□□ 1.85
CLN3-209ENST00000561689 QTRT2Q9H974 415 aaKnown RBP26.63■■□□□ 1.85
CLN3-209ENST00000561689 ALDH1L1O75891 902 aa26.62■■□□□ 1.85
CLN3-209ENST00000561689 GCC1Q96CN9 775 aa26.62■■□□□ 1.85
CLN3-209ENST00000561689 FAM182BQ5T319 152 aa26.62■■□□□ 1.85
CLN3-209ENST00000561689 N4BP2Q86UW6 1770 aaPredicted RBP26.61■■□□□ 1.85
CLN3-209ENST00000561689 TTLL7Q6ZT98 887 aa26.61■■□□□ 1.85
CLN3-209ENST00000561689 IGKV5-2P06315 115 aa26.6■■□□□ 1.85
CLN3-209ENST00000561689 MYD88Q99836 296 aa26.6■■□□□ 1.85
CLN3-209ENST00000561689 METTL22Q9BUU2 404 aaPredicted RBP26.6■■□□□ 1.85
CLN3-209ENST00000561689 THSD7AQ9UPZ6 1657 aa26.6■■□□□ 1.85
CLN3-209ENST00000561689 NEXNQ0ZGT2 675 aa26.6■■□□□ 1.85
CLN3-209ENST00000561689 ZNF330Q9Y3S2 320 aaPredicted RBP26.6■■□□□ 1.85
CLN3-209ENST00000561689 CYP19A1P11511 503 aaPredicted RBP26.59■■□□□ 1.85
CLN3-209ENST00000561689 NUCB1Q02818 461 aa26.59■■□□□ 1.85
CLN3-209ENST00000561689 PLBD2Q8NHP8 589 aa26.59■■□□□ 1.85
CLN3-209ENST00000561689 C9orf78Q9NZ63 289 aaPredicted RBP26.59■■□□□ 1.85
CLN3-209ENST00000561689 ONECUT3O60422 494 aaPredicted RBP26.58■■□□□ 1.85
CLN3-209ENST00000561689 RBM19Q9Y4C8 960 aaKnown RBP26.58■■□□□ 1.85
CLN3-209ENST00000561689 ANKRD45Q5TZF3 282 aa26.58■■□□□ 1.85
CLN3-209ENST00000561689 SEPT12Q8IYM1 358 aa26.58■■□□□ 1.85
CLN3-209ENST00000561689 DCTPP1Q9H773 170 aa26.58■■□□□ 1.85
CLN3-209ENST00000561689 HMMRO75330 724 aa26.57■■□□□ 1.84
CLN3-209ENST00000561689 PTF1AQ7RTS3 328 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms