RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	USP4	Q13107	963 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	ARSJ	Q5FYB0	599 aa	Predicted RBP	5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	FOXD4L3	Q6VB84	417 aa	Predicted RBP	5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	FCHSD1	Q86WN1	690 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	AIDA	Q96BJ3	306 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	NACC1	Q96RE7	527 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	KDM4C	Q9H3R0	1056 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	KLF15	Q9UIH9	416 aa		5.16	□□□□□ -1.58
SPG11-223	ENST00000560858	MAPT	P10636	758 aa	Known RBP	5.15	□□□□□ -1.59
SPG11-223	ENST00000560858	TLR1	Q15399	786 aa		5.15	□□□□□ -1.59
SPG11-223	ENST00000560858	PRSS36	Q5K4E3	855 aa		5.15	□□□□□ -1.59
SPG11-223	ENST00000560858	KHNYN	O15037	678 aa	Known RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	CD33	P20138	364 aa		5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	PLA2G4A	P47712	749 aa		5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	PCBP4	P57723	403 aa	Known RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	TNP2	Q05952	138 aa		5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	TRIM28	Q13263	835 aa	Known RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	ZNF468	Q5VIY5	522 aa	Predicted RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	GJD4	Q96KN9	370 aa	Predicted RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	NIFK	Q9BYG3	293 aa	Known RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	DNAAF2	Q9NVR5	837 aa	Known RBP	5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	GJA3	Q9Y6H8	435 aa		5.14	□□□□□ -1.59
SPG11-223	ENST00000560858	ELOA3C	A0A087WX78	387 aa	Predicted RBP	5.13	□□□□□ -1.59
SPG11-223	ENST00000560858		A0A1W2PNR3	127 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	DCDC2B	A2VCK2	349 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	ELOA3D	A6NLF2	546 aa	Predicted RBP	5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	ELOA3B	Q3SY89	546 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	ELOA3	Q8NG57	546 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	SIRT1	Q96EB6	747 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	CDCA7	Q9BWT1	371 aa	Predicted RBP	5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	GOLGA2P5	Q9HBQ8	144 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	CEP126	Q9P2H0	1117 aa		5.13	□□□□□ -1.59
SPG11-223	ENST00000560858	TAT	P17735	454 aa	Predicted RBP	5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	LRP8	Q14114	963 aa		5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	NBPF1	Q3BBV0	1214 aa		5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	PCMTD1	Q96MG8	357 aa	Predicted RBP	5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	GPBP1L1	Q9HC44	474 aa	Predicted RBP	5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	MARK1	Q9P0L2	795 aa		5.12	□□□□□ -1.59
SPG11-223	ENST00000560858	H2AFB1	P0C5Y9	115 aa		5.11	□□□□□ -1.59
SPG11-223	ENST00000560858	H2AFB2	P0C5Z0	115 aa		5.11	□□□□□ -1.59
SPG11-223	ENST00000560858	ATP4A	P20648	1035 aa		5.11	□□□□□ -1.59
SPG11-223	ENST00000560858	CCDC85A	Q96PX6	553 aa	Predicted RBP	5.11	□□□□□ -1.59
SPG11-223	ENST00000560858	ETNK1	Q9HBU6	452 aa		5.11	□□□□□ -1.59
SPG11-223	ENST00000560858	C9orf172	C9J069	976 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	HYAL3	O43820	417 aa	Predicted RBP	5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	FAM157B	P0CG42	384 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	LAMC2	Q13753	1193 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	KRTAP9-9	Q9BYP9	154 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	KRTAP9-4	Q9BYQ2	154 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	GOPC	Q9HD26	462 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	NISCH	Q9Y2I1	1504 aa		5.1	□□□□□ -1.59
SPG11-223	ENST00000560858	SYT9	Q86SS6	491 aa		5.09	□□□□□ -1.59
SPG11-223	ENST00000560858	PRDM6	Q9NQX0	595 aa		5.09	□□□□□ -1.59
SPG11-223	ENST00000560858	DOLK	Q9UPQ8	538 aa		5.09	□□□□□ -1.59
SPG11-223	ENST00000560858	FAM229A	H3BQW9	127 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858		M0R082	166 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	APBB1	O00213	710 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	SIN3B	O75182	1162 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	INHA	P05111	366 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	SMTN	P53814	917 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	GRIK4	Q16099	956 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	ZNF417	Q8TAU3	575 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	ZNF587	Q96SQ5	575 aa	Predicted RBP	5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	ZIC5	Q96T25	663 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	ZDHHC3	Q9NYG2	299 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	HCN2	Q9UL51	889 aa		5.08	□□□□□ -1.6
SPG11-223	ENST00000560858	ADARB2-AS1	A8MUL3	147 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	STAU1	O95793	577 aa	Known RBP	5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	GDF10	P55107	478 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	SLFNL1	Q499Z3	407 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	SAMD5	Q5TGI4	173 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	BICDL1	Q6ZP65	573 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	NDUFB9	Q9Y6M9	179 aa		5.07	□□□□□ -1.6
SPG11-223	ENST00000560858	EIF4G2	P78344	907 aa	Known RBP eCLIP	5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	NRG1	Q02297	640 aa	Predicted RBP	5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	NEUROD1	Q13562	356 aa		5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	TRAPPC3L	Q5T215	181 aa		5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	KRTAP19-1	Q8IUB9	90 aa		5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	NEUROD4	Q9HD90	331 aa		5.06	□□□□□ -1.6
SPG11-223	ENST00000560858	SOCS7	O14512	581 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	CDK2AP1	O14519	115 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	EFS	O43281	561 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	TSGA10IP	Q3SY00	556 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	OXLD1	Q5BKU9	147 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	MICALL1	Q8N3F8	863 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	BANK1	Q8NDB2	785 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	STRN4	Q9NRL3	753 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	CABP1	Q9NZU7	370 aa		5.05	□□□□□ -1.6
SPG11-223	ENST00000560858	KRTAP4-8	A0A0G2JLE6	195 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	PAX4	O43316	350 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	ELN	P15502	786 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	SCNN1D	P51172	638 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	COL9A3	Q14050	684 aa	Predicted RBP	5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	ADGRE1	Q14246	886 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	TXNRD3	Q86VQ6	643 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	PHTF2	Q8N3S3	785 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	TNFRSF25	Q93038	417 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	TP53INP1	Q96A56	240 aa		5.04	□□□□□ -1.6
SPG11-223	ENST00000560858	LENG1	Q96BZ8	264 aa	Predicted RBP	5.04	□□□□□ -1.6

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