RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 DCTN1Q14203 1278 aa15.03■□□□□ -0
GABPB1-210ENST00000560825 ZNF496Q96IT1 587 aaPredicted RBP15.03■□□□□ -0
GABPB1-210ENST00000560825 CCDC87Q9NVE4 849 aa15.03■□□□□ -0
GABPB1-210ENST00000560825 ANKRD31Q8N7Z5 1873 aa15.03■□□□□ -0
GABPB1-210ENST00000560825 ARFGEF1Q9Y6D6 1849 aa15.03■□□□□ -0
GABPB1-210ENST00000560825 U2AF1L5P0DN76 240 aaPredicted RBP15.02■□□□□ -0
GABPB1-210ENST00000560825 U2AF1Q01081 240 aaKnown RBP eCLIP15.02■□□□□ -0
GABPB1-210ENST00000560825 MCM10Q7L590 875 aa15.02■□□□□ -0
GABPB1-210ENST00000560825 BCL2L12Q9HB09 334 aa15.02■□□□□ -0
GABPB1-210ENST00000560825 BCORQ6W2J9 1755 aa15.02□□□□□ -0.01
GABPB1-210ENST00000560825 KDM3BQ7LBC6 1761 aa15.02□□□□□ -0.01
GABPB1-210ENST00000560825 USPL1Q5W0Q7 1092 aa15.01□□□□□ -0.01
GABPB1-210ENST00000560825 DLEC1Q9Y238 1755 aa15.01□□□□□ -0.01
GABPB1-210ENST00000560825 COL15A1P39059 1388 aa15.01□□□□□ -0.01
GABPB1-210ENST00000560825 KCNA3P22001 575 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 CEP350Q5VT06 3117 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 DPEP1P16444 411 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 CANXP27824 592 aaKnown RBP15□□□□□ -0.01
GABPB1-210ENST00000560825 PIP4K2AP48426 406 aaPredicted RBP15□□□□□ -0.01
GABPB1-210ENST00000560825 ZNF790Q6PG37 636 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 POTEHQ6S545 545 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 NLGN1Q8N2Q7 840 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 CFAP53Q96M91 514 aa15□□□□□ -0.01
GABPB1-210ENST00000560825 COL11A2P13942 1736 aaPredicted RBP14.99□□□□□ -0.01
GABPB1-210ENST00000560825 HEG1Q9ULI3 1381 aa14.99□□□□□ -0.01
GABPB1-210ENST00000560825 HMGB2P26583 209 aaKnown RBP14.99□□□□□ -0.01
GABPB1-210ENST00000560825 TM4SF1P30408 202 aa14.99□□□□□ -0.01
GABPB1-210ENST00000560825 GAS2L2Q8NHY3 880 aa14.99□□□□□ -0.01
GABPB1-210ENST00000560825 CACNA1SQ13698 1873 aa14.99□□□□□ -0.01
GABPB1-210ENST00000560825 CARMIL3Q8ND23 1372 aa14.98□□□□□ -0.01
GABPB1-210ENST00000560825 POLRMTO00411 1230 aaKnown RBP14.98□□□□□ -0.01
GABPB1-210ENST00000560825 MIS18AQ9NYP9 233 aa14.98□□□□□ -0.01
GABPB1-210ENST00000560825 ADCY9O60503 1353 aa14.98□□□□□ -0.01
GABPB1-210ENST00000560825 LAMB4A4D0S4 1761 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 SBF1O95248 1867 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 ATP10DQ9P241 1426 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 A1BGP04217 495 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 CHRNA5P30532 468 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 TEFQ10587 303 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 PLEKHF1Q96S99 279 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 PARP3Q9Y6F1 533 aa14.97□□□□□ -0.01
GABPB1-210ENST00000560825 GRIN3BO60391 1043 aa14.96□□□□□ -0.01
GABPB1-210ENST00000560825 DDX10Q13206 875 aaKnown RBP14.96□□□□□ -0.01
GABPB1-210ENST00000560825 NFIXQ14938 502 aa14.96□□□□□ -0.01
GABPB1-210ENST00000560825 VSIG10Q8N0Z9 540 aa14.96□□□□□ -0.01
GABPB1-210ENST00000560825 USP16Q9Y5T5 823 aa14.96□□□□□ -0.01
GABPB1-210ENST00000560825 BTBD11A6QL63 1104 aa14.95□□□□□ -0.02
GABPB1-210ENST00000560825 FCHSD2O94868 740 aa14.95□□□□□ -0.02
GABPB1-210ENST00000560825 EIF5P55010 431 aaKnown RBP14.95□□□□□ -0.02
GABPB1-210ENST00000560825 TTC5Q8N0Z6 440 aa14.95□□□□□ -0.02
GABPB1-210ENST00000560825 THUMPD2Q9BTF0 503 aaKnown RBP14.95□□□□□ -0.02
GABPB1-210ENST00000560825 NARFQ9UHQ1 456 aa14.95□□□□□ -0.02
GABPB1-210ENST00000560825 CCDC88AQ3V6T2 1871 aa14.95□□□□□ -0.02
GABPB1-210ENST00000560825 CCDC24Q8N4L8 307 aa14.94□□□□□ -0.02
GABPB1-210ENST00000560825 NUDCQ9Y266 331 aa14.94□□□□□ -0.02
GABPB1-210ENST00000560825 BCS1LQ9Y276 419 aa14.94□□□□□ -0.02
GABPB1-210ENST00000560825 TGFB2P61812 414 aa14.93□□□□□ -0.02
GABPB1-210ENST00000560825 ZNF526Q8TF50 670 aaPredicted RBP14.93□□□□□ -0.02
GABPB1-210ENST00000560825 TBC1D2BQ9UPU7 963 aa14.93□□□□□ -0.02
GABPB1-210ENST00000560825 ZPR1O75312 459 aa14.92□□□□□ -0.02
GABPB1-210ENST00000560825 TBC1D9BQ66K14 1250 aa14.92□□□□□ -0.02
GABPB1-210ENST00000560825 BICDL1Q6ZP65 573 aa14.92□□□□□ -0.02
GABPB1-210ENST00000560825 ZNF330Q9Y3S2 320 aaPredicted RBP14.92□□□□□ -0.02
GABPB1-210ENST00000560825 FMNL2Q96PY5 1086 aa14.92□□□□□ -0.02
GABPB1-210ENST00000560825 NBPF26B4DH59 902 aa14.91□□□□□ -0.02
GABPB1-210ENST00000560825 NBPF10Q6P3W6 841 aaKnown RBP14.91□□□□□ -0.02
GABPB1-210ENST00000560825 NBPF15Q8N660 670 aa14.91□□□□□ -0.02
GABPB1-210ENST00000560825 NUP98P52948 1817 aa14.9□□□□□ -0.02
GABPB1-210ENST00000560825 STARD3NLO95772 234 aa14.9□□□□□ -0.02
GABPB1-210ENST00000560825 SERPINB2P05120 415 aa14.9□□□□□ -0.02
GABPB1-210ENST00000560825 CAMTA2O94983 1202 aa14.89□□□□□ -0.03
GABPB1-210ENST00000560825 PRELPP51888 382 aa14.89□□□□□ -0.03
GABPB1-210ENST00000560825 C1QTNF8P60827 252 aa14.89□□□□□ -0.03
GABPB1-210ENST00000560825 TNRC6CQ9HCJ0 1690 aaKnown RBP14.88□□□□□ -0.03
GABPB1-210ENST00000560825 ARHGAP27Q6ZUM4 889 aa14.88□□□□□ -0.03
GABPB1-210ENST00000560825 SLX4Q8IY92 1834 aa14.88□□□□□ -0.03
GABPB1-210ENST00000560825 TIAM2Q8IVF5 1701 aa14.87□□□□□ -0.03
GABPB1-210ENST00000560825 IL6STP40189 918 aaPredicted RBP14.87□□□□□ -0.03
GABPB1-210ENST00000560825 NFE2L2Q16236 605 aa14.87□□□□□ -0.03
GABPB1-210ENST00000560825 RTF1Q92541 710 aaKnown RBP14.87□□□□□ -0.03
GABPB1-210ENST00000560825 ARFGEF2Q9Y6D5 1785 aa14.87□□□□□ -0.03
GABPB1-210ENST00000560825 TAF7Q15545 349 aaPredicted RBP14.86□□□□□ -0.03
GABPB1-210ENST00000560825 CCDC146Q8IYE0 955 aa14.86□□□□□ -0.03
GABPB1-210ENST00000560825 FER1L6Q2WGJ9 1857 aa14.86□□□□□ -0.03
GABPB1-210ENST00000560825 GIGYF1O75420 1035 aaPredicted RBP14.85□□□□□ -0.03
GABPB1-210ENST00000560825 PIM2Q9P1W9 311 aa14.85□□□□□ -0.03
GABPB1-210ENST00000560825 RRP7AQ9Y3A4 280 aaKnown RBP14.85□□□□□ -0.03
GABPB1-210ENST00000560825 HTATSF1O43719 755 aaKnown RBP14.84□□□□□ -0.03
GABPB1-210ENST00000560825 SNRPA1P09661 255 aaKnown RBP14.84□□□□□ -0.03
GABPB1-210ENST00000560825 RASSF7Q02833 373 aa14.84□□□□□ -0.03
GABPB1-210ENST00000560825 PRR5LQ6MZQ0 368 aa14.84□□□□□ -0.03
GABPB1-210ENST00000560825 TEX13AQ9BXU3 409 aaPredicted RBP14.84□□□□□ -0.03
GABPB1-210ENST00000560825 EIF4A1P60842 406 aaKnown RBP14.83□□□□□ -0.03
GABPB1-210ENST00000560825 RALBP1Q15311 655 aa14.83□□□□□ -0.03
GABPB1-210ENST00000560825 HLFQ16534 295 aa14.83□□□□□ -0.03
GABPB1-210ENST00000560825 DALRD3Q5D0E6 543 aaKnown RBP14.83□□□□□ -0.03
GABPB1-210ENST00000560825 DZIP3Q86Y13 1208 aaKnown RBP14.83□□□□□ -0.03
GABPB1-210ENST00000560825 MYBBP1AQ9BQG0 1328 aaKnown RBP14.83□□□□□ -0.04
GABPB1-210ENST00000560825 A0A087WZG4 1122 aa14.82□□□□□ -0.04
GABPB1-210ENST00000560825 KIF3CO14782 793 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms