RNA–Protein interactions for RNA: ENST00000558868.5

TPM1-215, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-215ENST00000558868 GCC1Q96CN9 775 aa17.3■□□□□ 0.36
TPM1-215ENST00000558868 PHAXQ9H814 394 aaKnown RBP17.3■□□□□ 0.36
TPM1-215ENST00000558868 ERBB4Q15303 1308 aa17.29■□□□□ 0.36
TPM1-215ENST00000558868 DNAAF4Q8WXU2 420 aa17.29■□□□□ 0.36
TPM1-215ENST00000558868 NGLY1Q96IV0 654 aa17.29■□□□□ 0.36
TPM1-215ENST00000558868 PAPPAQ13219 1627 aa17.29■□□□□ 0.36
TPM1-215ENST00000558868 SRCIN1Q9C0H9 1055 aa17.28■□□□□ 0.36
TPM1-215ENST00000558868 PDZRN3Q9UPQ7 1066 aa17.28■□□□□ 0.36
TPM1-215ENST00000558868 CCDC9Q9Y3X0 531 aaKnown RBP17.28■□□□□ 0.36
TPM1-215ENST00000558868 HMMRO75330 724 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 GNAI2P04899 355 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 DDB1Q16531 1140 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 KSR2Q6VAB6 950 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 ANKRD44Q8N8A2 993 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 HDAC5Q9UQL6 1122 aa17.27■□□□□ 0.36
TPM1-215ENST00000558868 ATP10DQ9P241 1426 aa17.27■□□□□ 0.35
TPM1-215ENST00000558868 C5P01031 1676 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 LAMB4A4D0S4 1761 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 UBR2Q8IWV8 1755 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 PRAMEF22A3QJZ6 481 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 PI4KAP2A4QPH2 592 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 VPS72Q15906 364 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 PI4KAP1Q8N8J0 262 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 C8orf37Q96NL8 207 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 MEIS3Q99687 375 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 TEX13AQ9BXU3 409 aaPredicted RBP17.26■□□□□ 0.35
TPM1-215ENST00000558868 C1orf115Q9H7X2 142 aa17.26■□□□□ 0.35
TPM1-215ENST00000558868 ALDH1L1O75891 902 aa17.25■□□□□ 0.35
TPM1-215ENST00000558868 RGS3P49796 1198 aa17.25■□□□□ 0.35
TPM1-215ENST00000558868 PDIA6Q15084 440 aa17.25■□□□□ 0.35
TPM1-215ENST00000558868 FNBP4Q8N3X1 1017 aaPredicted RBP17.25■□□□□ 0.35
TPM1-215ENST00000558868 TOGARAM1Q9Y4F4 1720 aa17.24■□□□□ 0.35
TPM1-215ENST00000558868 VSIG10Q8N0Z9 540 aa17.24■□□□□ 0.35
TPM1-215ENST00000558868 RBM19Q9Y4C8 960 aaKnown RBP17.24■□□□□ 0.35
TPM1-215ENST00000558868 USP16Q9Y5T5 823 aa17.24■□□□□ 0.35
TPM1-215ENST00000558868 KCPQ6ZWJ8 1503 aa17.24■□□□□ 0.35
TPM1-215ENST00000558868 ADCY9O60503 1353 aa17.24■□□□□ 0.35
TPM1-215ENST00000558868 LRP5O75197 1615 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 ANXA1P04083 346 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 UBTFL1P0CB47 393 aaPredicted RBP17.23■□□□□ 0.35
TPM1-215ENST00000558868 RXRBP28702 533 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 NUCB1Q02818 461 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 PROSER3Q2NL68 480 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 BEND3Q5T5X7 828 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 ZNF772Q68DY9 489 aaPredicted RBP17.23■□□□□ 0.35
TPM1-215ENST00000558868 CEP85Q6P2H3 762 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 MAP3K2Q9Y2U5 619 aa17.23■□□□□ 0.35
TPM1-215ENST00000558868 IBTKQ9P2D0 1353 aaPredicted RBP17.23■□□□□ 0.35
TPM1-215ENST00000558868 PDE4AP27815 886 aa17.22■□□□□ 0.35
TPM1-215ENST00000558868 SIRT2Q8IXJ6 389 aa17.22■□□□□ 0.35
TPM1-215ENST00000558868 PIGBQ92521 554 aa17.22■□□□□ 0.35
TPM1-215ENST00000558868 ZBTB47Q9UFB7 747 aaPredicted RBP17.22■□□□□ 0.35
TPM1-215ENST00000558868 BCL9O00512 1426 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 GLI3P10071 1580 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 BCL9LQ86UU0 1499 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 MYL6BP14649 208 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 NEXNQ0ZGT2 675 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 MEX3CQ5U5Q3 659 aaKnown RBP17.21■□□□□ 0.35
TPM1-215ENST00000558868 RIC3Q7Z5B4 369 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 LINS1Q8NG48 757 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 USP44Q9H0E7 712 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 DCTPP1Q9H773 170 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 ITGB4P16144 1822 aa17.21■□□□□ 0.35
TPM1-215ENST00000558868 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.21■□□□□ 0.35
TPM1-215ENST00000558868 PTCD1O75127 700 aaKnown RBP17.2■□□□□ 0.34
TPM1-215ENST00000558868 FAM161AQ3B820 660 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 CHD1LQ86WJ1 897 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 SKAP1Q86WV1 359 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 XAGE3Q8WTP9 111 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 BACH2Q9BYV9 841 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 USP21Q9UK80 565 aa17.2■□□□□ 0.34
TPM1-215ENST00000558868 AIMP1Q12904 312 aaKnown RBP17.19■□□□□ 0.34
TPM1-215ENST00000558868 ANKRD13DQ6ZTN6 518 aa17.19■□□□□ 0.34
TPM1-215ENST00000558868 COPS6Q7L5N1 327 aa17.19■□□□□ 0.34
TPM1-215ENST00000558868 ATG3Q9NT62 314 aa17.19■□□□□ 0.34
TPM1-215ENST00000558868 STARD3NLO95772 234 aa17.18■□□□□ 0.34
TPM1-215ENST00000558868 ATP8B2P98198 1209 aa17.18■□□□□ 0.34
TPM1-215ENST00000558868 ANKRD45Q5TZF3 282 aa17.18■□□□□ 0.34
TPM1-215ENST00000558868 LRP10Q7Z4F1 713 aa17.17■□□□□ 0.34
TPM1-215ENST00000558868 PLBD2Q8NHP8 589 aa17.17■□□□□ 0.34
TPM1-215ENST00000558868 METTL22Q9BUU2 404 aaPredicted RBP17.17■□□□□ 0.34
TPM1-215ENST00000558868 C9orf78Q9NZ63 289 aaPredicted RBP17.17■□□□□ 0.34
TPM1-215ENST00000558868 ASAP1Q9ULH1 1129 aa17.17■□□□□ 0.34
TPM1-215ENST00000558868 PRIM1P49642 420 aaKnown RBP17.16■□□□□ 0.34
TPM1-215ENST00000558868 MARCH10Q8NA82 808 aaPredicted RBP17.16■□□□□ 0.34
TPM1-215ENST00000558868 SYTL4Q96C24 671 aaPredicted RBP17.16■□□□□ 0.34
TPM1-215ENST00000558868 LRRFIP2Q9Y608 721 aaKnown RBP17.16■□□□□ 0.34
TPM1-215ENST00000558868 DOT1LQ8TEK3 1739 aa17.16■□□□□ 0.34
TPM1-215ENST00000558868 FAM98CQ17RN3 349 aaKnown RBP17.15■□□□□ 0.34
TPM1-215ENST00000558868 RBM42Q9BTD8 480 aaKnown RBP17.15■□□□□ 0.34
TPM1-215ENST00000558868 SMARCC1Q92922 1105 aaPredicted RBP17.14■□□□□ 0.33
TPM1-215ENST00000558868 LNPKQ9C0E8 428 aa17.14■□□□□ 0.33
TPM1-215ENST00000558868 UTYO14607 1347 aa17.14■□□□□ 0.33
TPM1-215ENST00000558868 NBPF26B4DH59 902 aa17.13■□□□□ 0.33
TPM1-215ENST00000558868 GRM8O00222 908 aa17.13■□□□□ 0.33
TPM1-215ENST00000558868 NBPF14Q5TI25 921 aa17.13■□□□□ 0.33
TPM1-215ENST00000558868 NBPF10Q6P3W6 841 aaKnown RBP17.13■□□□□ 0.33
TPM1-215ENST00000558868 NBPF15Q8N660 670 aa17.13■□□□□ 0.33
TPM1-215ENST00000558868 NEURL1BA8MQ27 555 aa17.12■□□□□ 0.33
TPM1-215ENST00000558868 A1BGP04217 495 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms