RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 DDR1Q08345 913 aa16.62■□□□□ 0.25
SMAD3-208ENST00000558827 CICQ96RK0 1608 aaPredicted RBP16.62■□□□□ 0.25
SMAD3-208ENST00000558827 CEMIPQ8WUJ3 1361 aa16.62■□□□□ 0.25
SMAD3-208ENST00000558827 HEG1Q9ULI3 1381 aa16.62■□□□□ 0.25
SMAD3-208ENST00000558827 STARD3NLO95772 234 aa16.61■□□□□ 0.25
SMAD3-208ENST00000558827 VSIG10Q8N0Z9 540 aa16.61■□□□□ 0.25
SMAD3-208ENST00000558827 FMNL2Q96PY5 1086 aa16.61■□□□□ 0.25
SMAD3-208ENST00000558827 PLEKHF1Q96S99 279 aa16.61■□□□□ 0.25
SMAD3-208ENST00000558827 SIPA1L3O60292 1781 aaPredicted RBP16.6■□□□□ 0.25
SMAD3-208ENST00000558827 BICDL1Q6ZP65 573 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 CCDC146Q8IYE0 955 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 TBC1D2BQ9UPU7 963 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 COL15A1P39059 1388 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 CHD4Q14839 1912 aa16.6■□□□□ 0.25
SMAD3-208ENST00000558827 GOLGB1Q14789 3259 aaKnown RBP16.6■□□□□ 0.25
SMAD3-208ENST00000558827 UBR2Q8IWV8 1755 aa16.59■□□□□ 0.25
SMAD3-208ENST00000558827 DPEP1P16444 411 aa16.59■□□□□ 0.25
SMAD3-208ENST00000558827 NFE2L2Q16236 605 aa16.59■□□□□ 0.25
SMAD3-208ENST00000558827 ZNF784Q8NCA9 323 aaPredicted RBP16.59■□□□□ 0.25
SMAD3-208ENST00000558827 NARFQ9UHQ1 456 aa16.59■□□□□ 0.25
SMAD3-208ENST00000558827 MAPK8IP3Q9UPT6 1336 aa16.59■□□□□ 0.25
SMAD3-208ENST00000558827 GRIN3BO60391 1043 aa16.58■□□□□ 0.24
SMAD3-208ENST00000558827 BCL2L12Q9HB09 334 aa16.58■□□□□ 0.24
SMAD3-208ENST00000558827 RRP7AQ9Y3A4 280 aaKnown RBP16.58■□□□□ 0.24
SMAD3-208ENST00000558827 MYBBP1AQ9BQG0 1328 aaKnown RBP16.58■□□□□ 0.24
SMAD3-208ENST00000558827 N4BP2Q86UW6 1770 aaPredicted RBP16.58■□□□□ 0.24
SMAD3-208ENST00000558827 DLG5Q8TDM6 1919 aa16.57■□□□□ 0.24
SMAD3-208ENST00000558827 TM4SF1P30408 202 aa16.57■□□□□ 0.24
SMAD3-208ENST00000558827 EIF5P55010 431 aaKnown RBP16.57■□□□□ 0.24
SMAD3-208ENST00000558827 NFIXQ14938 502 aa16.57■□□□□ 0.24
SMAD3-208ENST00000558827 TAF7Q15545 349 aaPredicted RBP16.57■□□□□ 0.24
SMAD3-208ENST00000558827 NEUROD2Q15784 382 aa16.57■□□□□ 0.24
SMAD3-208ENST00000558827 BCS1LQ9Y276 419 aa16.57■□□□□ 0.24
SMAD3-208ENST00000558827 POLRMTO00411 1230 aaKnown RBP16.56■□□□□ 0.24
SMAD3-208ENST00000558827 HTATSF1O43719 755 aaKnown RBP16.56■□□□□ 0.24
SMAD3-208ENST00000558827 TEX13AQ9BXU3 409 aaPredicted RBP16.56■□□□□ 0.24
SMAD3-208ENST00000558827 PXDNLA1KZ92 1463 aa16.55■□□□□ 0.24
SMAD3-208ENST00000558827 CHRNA5P30532 468 aa16.55■□□□□ 0.24
SMAD3-208ENST00000558827 CCDC24Q8N4L8 307 aa16.55■□□□□ 0.24
SMAD3-208ENST00000558827 SNRPA1P09661 255 aaKnown RBP16.54■□□□□ 0.24
SMAD3-208ENST00000558827 RIPK4P57078 832 aa16.54■□□□□ 0.24
SMAD3-208ENST00000558827 NGEFQ8N5V2 710 aa16.54■□□□□ 0.24
SMAD3-208ENST00000558827 C10orf71Q711Q0 1435 aa16.53■□□□□ 0.24
SMAD3-208ENST00000558827 A0A087WZG4 1122 aa16.53■□□□□ 0.24
SMAD3-208ENST00000558827 SERPINB2P05120 415 aa16.53■□□□□ 0.24
SMAD3-208ENST00000558827 TGFB2P61812 414 aa16.53■□□□□ 0.24
SMAD3-208ENST00000558827 TBC1D9BQ66K14 1250 aa16.53■□□□□ 0.24
SMAD3-208ENST00000558827 NPM2Q86SE8 214 aaKnown RBP16.53■□□□□ 0.24
SMAD3-208ENST00000558827 PNNQ9H307 717 aaKnown RBP16.53■□□□□ 0.24
SMAD3-208ENST00000558827 PRKRIP1Q9H875 184 aaPredicted RBP16.53■□□□□ 0.24
SMAD3-208ENST00000558827 ZEB1P37275 1124 aaPredicted RBP16.52■□□□□ 0.24
SMAD3-208ENST00000558827 IL6STP40189 918 aaPredicted RBP16.52■□□□□ 0.24
SMAD3-208ENST00000558827 WDR43Q15061 677 aaKnown RBP eCLIP16.52■□□□□ 0.24
SMAD3-208ENST00000558827 SENP3-EIF4A1A0A087X0R7 540 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 NBPF26B4DH59 902 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 KCNA3P22001 575 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 TMPOP42166 694 aaKnown RBP16.51■□□□□ 0.23
SMAD3-208ENST00000558827 NBPF10Q6P3W6 841 aaKnown RBP16.51■□□□□ 0.23
SMAD3-208ENST00000558827 ARHGAP27Q6ZUM4 889 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 DZIP3Q86Y13 1208 aaKnown RBP16.51■□□□□ 0.23
SMAD3-208ENST00000558827 NBPF15Q8N660 670 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 ZNF526Q8TF50 670 aaPredicted RBP16.51■□□□□ 0.23
SMAD3-208ENST00000558827 ADAMTS8Q9UP79 889 aa16.51■□□□□ 0.23
SMAD3-208ENST00000558827 KIAA1551Q9HCM1 1747 aa16.5■□□□□ 0.23
SMAD3-208ENST00000558827 KIF13BQ9NQT8 1826 aa16.5■□□□□ 0.23
SMAD3-208ENST00000558827 CAMTA2O94983 1202 aa16.49■□□□□ 0.23
SMAD3-208ENST00000558827 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
SMAD3-208ENST00000558827 AFDNP55196 1824 aaKnown RBP16.49■□□□□ 0.23
SMAD3-208ENST00000558827 FAM177BA6PVY3 158 aa16.48■□□□□ 0.23
SMAD3-208ENST00000558827 EIF4A1P60842 406 aaKnown RBP16.48■□□□□ 0.23
SMAD3-208ENST00000558827 PIM2Q9P1W9 311 aa16.48■□□□□ 0.23
SMAD3-208ENST00000558827 TSPYL4Q9UJ04 414 aa16.48■□□□□ 0.23
SMAD3-208ENST00000558827 CARMIL3Q8ND23 1372 aa16.48■□□□□ 0.23
SMAD3-208ENST00000558827 MYL6BP14649 208 aa16.47■□□□□ 0.23
SMAD3-208ENST00000558827 CCDC184Q52MB2 194 aa16.47■□□□□ 0.23
SMAD3-208ENST00000558827 PNISRQ8TF01 805 aaKnown RBP16.47■□□□□ 0.23
SMAD3-208ENST00000558827 GIGYF1O75420 1035 aaPredicted RBP16.46■□□□□ 0.23
SMAD3-208ENST00000558827 EIF2S2P20042 333 aaKnown RBP16.46■□□□□ 0.23
SMAD3-208ENST00000558827 DALRD3Q5D0E6 543 aaKnown RBP16.46■□□□□ 0.23
SMAD3-208ENST00000558827 C2CD5Q86YS7 1000 aa16.46■□□□□ 0.23
SMAD3-208ENST00000558827 NECTIN2Q92692 538 aa16.46■□□□□ 0.23
SMAD3-208ENST00000558827 RUNDC1Q96C34 613 aa16.46■□□□□ 0.23
SMAD3-208ENST00000558827 SETDB2Q96T68 719 aa16.46■□□□□ 0.23
SMAD3-208ENST00000558827 ZNF316A6NFI3 1004 aaPredicted RBP16.45■□□□□ 0.22
SMAD3-208ENST00000558827 NPHP1O15259 732 aa16.45■□□□□ 0.22
SMAD3-208ENST00000558827 ZNF219Q9P2Y4 722 aaPredicted RBP16.45■□□□□ 0.22
SMAD3-208ENST00000558827 ATP10DQ9P241 1426 aa16.45■□□□□ 0.22
SMAD3-208ENST00000558827 ANXA1P04083 346 aa16.44■□□□□ 0.22
SMAD3-208ENST00000558827 HLFQ16534 295 aa16.44■□□□□ 0.22
SMAD3-208ENST00000558827 PRR5LQ6MZQ0 368 aa16.44■□□□□ 0.22
SMAD3-208ENST00000558827 ZNF622Q969S3 477 aaKnown RBP eCLIP16.44■□□□□ 0.22
SMAD3-208ENST00000558827 KDM3BQ7LBC6 1761 aa16.43■□□□□ 0.22
SMAD3-208ENST00000558827 KRT24Q2M2I5 525 aa16.43■□□□□ 0.22
SMAD3-208ENST00000558827 TTLL7Q6ZT98 887 aa16.43■□□□□ 0.22
SMAD3-208ENST00000558827 TRIM35Q9UPQ4 493 aa16.43■□□□□ 0.22
SMAD3-208ENST00000558827 H0YIN7 160 aa16.42■□□□□ 0.22
SMAD3-208ENST00000558827 NIP7Q9Y221 180 aaKnown RBP eCLIP16.42■□□□□ 0.22
SMAD3-208ENST00000558827 BRCA1P38398 1863 aaKnown RBP16.42■□□□□ 0.22
SMAD3-208ENST00000558827 SCN7AQ01118 1682 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms