RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 MTHFSDQ2M296 383 aaKnown RBP13.24□□□□□ -0.29
USP3-206ENST00000558157 FEZ1Q99689 392 aa13.24□□□□□ -0.29
USP3-206ENST00000558157 CSB-PGBD3P0DP91 1061 aa13.23□□□□□ -0.29
USP3-206ENST00000558157 CBX1P83916 185 aa13.23□□□□□ -0.29
USP3-206ENST00000558157 DNTTIP2Q5QJE6 756 aaKnown RBP13.23□□□□□ -0.29
USP3-206ENST00000558157 TMEM51Q9NW97 253 aa13.23□□□□□ -0.29
USP3-206ENST00000558157 FAM83GA6ND36 823 aa13.23□□□□□ -0.29
USP3-206ENST00000558157 THUMPD2Q9BTF0 503 aaKnown RBP13.23□□□□□ -0.29
USP3-206ENST00000558157 NLRP2Q9NX02 1062 aa13.23□□□□□ -0.29
USP3-206ENST00000558157 PTMAP06454 111 aaKnown RBP13.22□□□□□ -0.29
USP3-206ENST00000558157 LMOD3Q0VAK6 560 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 CHD1LQ86WJ1 897 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 FAM184AQ8NB25 1140 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 SPTLC3Q9NUV7 552 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 PLCH1Q4KWH8 1693 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 IL16Q14005 1332 aa13.22□□□□□ -0.29
USP3-206ENST00000558157 DCTN1Q14203 1278 aa13.21□□□□□ -0.29
USP3-206ENST00000558157 UVSSAQ2YD98 709 aa13.21□□□□□ -0.29
USP3-206ENST00000558157 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP3-206ENST00000558157 LRRC37A3O60309 1634 aa13.21□□□□□ -0.29
USP3-206ENST00000558157 KLHL34Q8N239 644 aa13.21□□□□□ -0.3
USP3-206ENST00000558157 PDCL2Q8N4E4 241 aa13.21□□□□□ -0.3
USP3-206ENST00000558157 GPT2Q8TD30 523 aa13.21□□□□□ -0.3
USP3-206ENST00000558157 ZBTB40Q9NUA8 1239 aa13.21□□□□□ -0.3
USP3-206ENST00000558157 WDR17Q8IZU2 1322 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 FKBP5Q13451 457 aaPredicted RBP13.2□□□□□ -0.3
USP3-206ENST00000558157 NOLC1Q14978 699 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP3-206ENST00000558157 SYAP1Q96A49 352 aaPredicted RBP13.2□□□□□ -0.3
USP3-206ENST00000558157 BCL2L13Q9BXK5 485 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 DIAPH3Q9NSV4 1193 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 FOXD4L1Q9NU39 408 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 MEGF6O75095 1541 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 GABPB1Q06547 395 aaPredicted RBP13.2□□□□□ -0.3
USP3-206ENST00000558157 ATP2B3Q16720 1220 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 ATF7IPQ6VMQ6 1270 aa13.2□□□□□ -0.3
USP3-206ENST00000558157 TSR2Q969E8 191 aaKnown RBP13.2□□□□□ -0.3
USP3-206ENST00000558157 CHMP4BQ9H444 224 aaKnown RBP13.2□□□□□ -0.3
USP3-206ENST00000558157 PHF14O94880 888 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 TRIM27P14373 513 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 MCM10Q7L590 875 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 GCC1Q96CN9 775 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 BCL11BQ9C0K0 894 aaPredicted RBP13.19□□□□□ -0.3
USP3-206ENST00000558157 MAP3K5Q99683 1374 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 SLC20A2Q08357 652 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 TAF7LQ5H9L4 462 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 TBC1D9Q6ZT07 1266 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 ANKRD7Q92527 254 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 STRN4Q9NRL3 753 aa13.19□□□□□ -0.3
USP3-206ENST00000558157 PARP4Q9UKK3 1724 aaKnown RBP13.18□□□□□ -0.3
USP3-206ENST00000558157 PRPF40AO75400 957 aaKnown RBP13.18□□□□□ -0.3
USP3-206ENST00000558157 ITPRIPQ8IWB1 547 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 TSPY26PQ9H489 355 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 TMEM63CQ9P1W3 806 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 PKD1L3Q7Z443 1732 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 NRAPQ86VF7 1730 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 SYCE3A1L190 88 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 NUTM2BA6NNL0 878 aaPredicted RBP13.18□□□□□ -0.3
USP3-206ENST00000558157 NUTM2EB1AL46 878 aaPredicted RBP13.18□□□□□ -0.3
USP3-206ENST00000558157 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 NUTM2AQ8IVF1 878 aaPredicted RBP13.18□□□□□ -0.3
USP3-206ENST00000558157 BCL2L12Q9HB09 334 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 BTG4Q9NY30 223 aa13.18□□□□□ -0.3
USP3-206ENST00000558157 JCADQ9P266 1359 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 IPO8O15397 1037 aaKnown RBP13.17□□□□□ -0.3
USP3-206ENST00000558157 CDC45O75419 566 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 ADAMTS2O95450 1211 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 CHAF1AQ13111 956 aaPredicted RBP13.17□□□□□ -0.3
USP3-206ENST00000558157 SYCP1Q15431 976 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 SMC4Q9NTJ3 1288 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 OGFRQ9NZT2 677 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 CRB1P82279 1406 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 GNAT3A8MTJ3 354 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
USP3-206ENST00000558157 LARP1Q6PKG0 1096 aaKnown RBP13.17□□□□□ -0.3
USP3-206ENST00000558157 RAPGEF4Q8WZA2 1011 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 RTF1Q92541 710 aaKnown RBP13.17□□□□□ -0.3
USP3-206ENST00000558157 IFT57Q9NWB7 429 aa13.17□□□□□ -0.3
USP3-206ENST00000558157 EVA1CP58658 441 aa13.16□□□□□ -0.3
USP3-206ENST00000558157 ZNF530Q6P9A1 599 aaPredicted RBP13.16□□□□□ -0.3
USP3-206ENST00000558157 LNPKQ9C0E8 428 aa13.16□□□□□ -0.3
USP3-206ENST00000558157 ZNF853P0CG23 659 aa13.15□□□□□ -0.3
USP3-206ENST00000558157 TATP17735 454 aaPredicted RBP13.15□□□□□ -0.3
USP3-206ENST00000558157 AMOTQ4VCS5 1084 aa13.15□□□□□ -0.3
USP3-206ENST00000558157 CTIFO43310 598 aaKnown RBP13.15□□□□□ -0.3
USP3-206ENST00000558157 TPM3P06753 285 aa13.15□□□□□ -0.3
USP3-206ENST00000558157 CDK11BP21127 795 aaKnown RBP13.15□□□□□ -0.3
USP3-206ENST00000558157 GNAI1P63096 354 aa13.15□□□□□ -0.3
USP3-206ENST00000558157 FAM193AP78312 1265 aa13.15□□□□□ -0.3
USP3-206ENST00000558157 RBM42Q9BTD8 480 aaKnown RBP13.15□□□□□ -0.3
USP3-206ENST00000558157 RBM27Q9P2N5 1060 aaKnown RBP13.15□□□□□ -0.3
USP3-206ENST00000558157 CCDC66A2RUB6 948 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 HTATSF1O43719 755 aaKnown RBP13.14□□□□□ -0.31
USP3-206ENST00000558157 ST18O60284 1047 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 EXOSC9Q06265 439 aaKnown RBP13.14□□□□□ -0.31
USP3-206ENST00000558157 OVOS2A0A0G2JMS6 1433 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 CARD10Q9BWT7 1032 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 MBIPQ9NS73 344 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 NWD2Q9ULI1 1742 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 WNK3Q9BYP7 1800 aa13.14□□□□□ -0.31
USP3-206ENST00000558157 PLEKHG2Q9H7P9 1386 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms