RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 ZNF790Q6PG37 636 aa16.48■□□□□ 0.23
SLIRP-211ENST00000557623 COL23A1Q86Y22 540 aaPredicted RBP16.48■□□□□ 0.23
SLIRP-211ENST00000557623 RUNDC1Q96C34 613 aa16.48■□□□□ 0.23
SLIRP-211ENST00000557623 PPP1R1BQ9UD71 204 aaPredicted RBP16.48■□□□□ 0.23
SLIRP-211ENST00000557623 ADAMTS8Q9UP79 889 aa16.48■□□□□ 0.23
SLIRP-211ENST00000557623 LMOD3Q0VAK6 560 aa16.47■□□□□ 0.23
SLIRP-211ENST00000557623 DCTN1Q14203 1278 aa16.47■□□□□ 0.23
SLIRP-211ENST00000557623 RTCBQ9Y3I0 505 aaKnown RBP16.47■□□□□ 0.23
SLIRP-211ENST00000557623 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
SLIRP-211ENST00000557623 PHF14O94880 888 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 TMPOP42166 694 aaKnown RBP16.45■□□□□ 0.22
SLIRP-211ENST00000557623 PTGER2P43116 358 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 RIPK4P57078 832 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 TAF7Q15545 349 aaPredicted RBP16.45■□□□□ 0.22
SLIRP-211ENST00000557623 DNAJC10Q8IXB1 793 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 CCDC146Q8IYE0 955 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 PNISRQ8TF01 805 aaKnown RBP16.45■□□□□ 0.22
SLIRP-211ENST00000557623 FMNL2Q96PY5 1086 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
SLIRP-211ENST00000557623 HEG1Q9ULI3 1381 aa16.44■□□□□ 0.22
SLIRP-211ENST00000557623 RPS6KA4O75676 772 aa16.44■□□□□ 0.22
SLIRP-211ENST00000557623 POLD1P28340 1107 aa16.44■□□□□ 0.22
SLIRP-211ENST00000557623 CRKLP46109 303 aaKnown RBP16.44■□□□□ 0.22
SLIRP-211ENST00000557623 FXR2P51116 673 aaKnown RBP eCLIP16.44■□□□□ 0.22
SLIRP-211ENST00000557623 TRAPPC3LQ5T215 181 aa16.44■□□□□ 0.22
SLIRP-211ENST00000557623 TEX13AQ9BXU3 409 aaPredicted RBP16.44■□□□□ 0.22
SLIRP-211ENST00000557623 C4AP0C0L4 1744 aa16.44■□□□□ 0.22
SLIRP-211ENST00000557623 PIP4P2Q8N4L2 257 aa16.43■□□□□ 0.22
SLIRP-211ENST00000557623 ZNF496Q96IT1 587 aaPredicted RBP16.43■□□□□ 0.22
SLIRP-211ENST00000557623 SGIP1Q9BQI5 828 aa16.43■□□□□ 0.22
SLIRP-211ENST00000557623 STARD3NLO95772 234 aa16.42■□□□□ 0.22
SLIRP-211ENST00000557623 CYP19A1P11511 503 aaPredicted RBP16.42■□□□□ 0.22
SLIRP-211ENST00000557623 AMIGO3Q86WK7 504 aa16.42■□□□□ 0.22
SLIRP-211ENST00000557623 MRS2Q9HD23 443 aa16.42■□□□□ 0.22
SLIRP-211ENST00000557623 CCDC87Q9NVE4 849 aa16.42■□□□□ 0.22
SLIRP-211ENST00000557623 CCDC184Q52MB2 194 aa16.41■□□□□ 0.22
SLIRP-211ENST00000557623 KCNQ3O43525 872 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 RFC4P35249 363 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 NEUROD2Q15784 382 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 INTS5Q6P9B9 1019 aaKnown RBP16.4■□□□□ 0.22
SLIRP-211ENST00000557623 POTEHQ6S545 545 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 ARXQ96QS3 562 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
SLIRP-211ENST00000557623 LAMB4A4D0S4 1761 aa16.4■□□□□ 0.22
SLIRP-211ENST00000557623 SMIM5Q71RC9 77 aa16.39■□□□□ 0.21
SLIRP-211ENST00000557623 ARHGEF1Q92888 912 aaKnown RBP16.39■□□□□ 0.21
SLIRP-211ENST00000557623 THUMPD2Q9BTF0 503 aaKnown RBP16.39■□□□□ 0.21
SLIRP-211ENST00000557623 BABAM1Q9NWV8 329 aa16.39■□□□□ 0.21
SLIRP-211ENST00000557623 SNRPA1P09661 255 aaKnown RBP16.38■□□□□ 0.21
SLIRP-211ENST00000557623 MSL1Q68DK7 614 aa16.38■□□□□ 0.21
SLIRP-211ENST00000557623 APAF1O14727 1248 aa16.37■□□□□ 0.21
SLIRP-211ENST00000557623 MIS18AQ9NYP9 233 aa16.37■□□□□ 0.21
SLIRP-211ENST00000557623 FBXO3Q9UK99 471 aa16.37■□□□□ 0.21
SLIRP-211ENST00000557623 ZBTB1Q9Y2K1 713 aa16.37■□□□□ 0.21
SLIRP-211ENST00000557623 SOS1Q07889 1333 aaPredicted RBP16.37■□□□□ 0.21
SLIRP-211ENST00000557623 NLGN1Q8N2Q7 840 aa16.36■□□□□ 0.21
SLIRP-211ENST00000557623 TSPYL4Q9UJ04 414 aa16.36■□□□□ 0.21
SLIRP-211ENST00000557623 TRIM35Q9UPQ4 493 aa16.36■□□□□ 0.21
SLIRP-211ENST00000557623 CANXP27824 592 aaKnown RBP16.35■□□□□ 0.21
SLIRP-211ENST00000557623 COL15A1P39059 1388 aa16.35■□□□□ 0.21
SLIRP-211ENST00000557623 A0A087WZG4 1122 aa16.34■□□□□ 0.21
SLIRP-211ENST00000557623 ZPR1O75312 459 aa16.34■□□□□ 0.21
SLIRP-211ENST00000557623 EIF4A1P60842 406 aaKnown RBP16.34■□□□□ 0.21
SLIRP-211ENST00000557623 NPM2Q86SE8 214 aaKnown RBP16.34■□□□□ 0.21
SLIRP-211ENST00000557623 FHDC1Q9C0D6 1143 aaPredicted RBP16.34■□□□□ 0.21
SLIRP-211ENST00000557623 USP16Q9Y5T5 823 aa16.34■□□□□ 0.21
SLIRP-211ENST00000557623 USP42Q9H9J4 1324 aaKnown RBP16.34■□□□□ 0.21
SLIRP-211ENST00000557623 GYS1P13807 737 aa16.33■□□□□ 0.2
SLIRP-211ENST00000557623 PRKAR2AP13861 404 aaKnown RBP16.33■□□□□ 0.2
SLIRP-211ENST00000557623 IL6STP40189 918 aaPredicted RBP16.33■□□□□ 0.2
SLIRP-211ENST00000557623 EIF5P55010 431 aaKnown RBP16.33■□□□□ 0.2
SLIRP-211ENST00000557623 CALD1Q05682 793 aaKnown RBP16.33■□□□□ 0.2
SLIRP-211ENST00000557623 SYT17Q9BSW7 474 aa16.33■□□□□ 0.2
SLIRP-211ENST00000557623 GIGYF1O75420 1035 aaPredicted RBP16.32■□□□□ 0.2
SLIRP-211ENST00000557623 A1BGP04217 495 aa16.32■□□□□ 0.2
SLIRP-211ENST00000557623 NARFQ9UHQ1 456 aa16.32■□□□□ 0.2
SLIRP-211ENST00000557623 PRAMEF22A3QJZ6 481 aa16.31■□□□□ 0.2
SLIRP-211ENST00000557623 KLHL34Q8N239 644 aa16.31■□□□□ 0.2
SLIRP-211ENST00000557623 SRP68Q9UHB9 627 aaKnown RBP16.31■□□□□ 0.2
SLIRP-211ENST00000557623 SRCAPQ6ZRS2 3230 aa16.31■□□□□ 0.2
SLIRP-211ENST00000557623 SCN7AQ01118 1682 aa16.3■□□□□ 0.2
SLIRP-211ENST00000557623 CHL1O00533 1208 aa16.3■□□□□ 0.2
SLIRP-211ENST00000557623 MMP10P09238 476 aa16.3■□□□□ 0.2
SLIRP-211ENST00000557623 LAS1LQ9Y4W2 734 aaKnown RBP16.3■□□□□ 0.2
SLIRP-211ENST00000557623 BCORQ6W2J9 1755 aa16.3■□□□□ 0.2
SLIRP-211ENST00000557623 KIF13BQ9NQT8 1826 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 CCDC27Q2M243 656 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 USPL1Q5W0Q7 1092 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 CFAP44Q96MT7 982 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 ZNF330Q9Y3S2 320 aaPredicted RBP16.29■□□□□ 0.2
SLIRP-211ENST00000557623 CD2APQ9Y5K6 639 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 PARP3Q9Y6F1 533 aa16.29■□□□□ 0.2
SLIRP-211ENST00000557623 FAM9BQ8IZU0 186 aa16.28■□□□□ 0.2
SLIRP-211ENST00000557623 GNAI1P63096 354 aa16.27■□□□□ 0.2
SLIRP-211ENST00000557623 IFT57Q9NWB7 429 aa16.27■□□□□ 0.2
SLIRP-211ENST00000557623 AFDNP55196 1824 aaKnown RBP16.26■□□□□ 0.19
SLIRP-211ENST00000557623 ERBB4Q15303 1308 aa16.26■□□□□ 0.19
SLIRP-211ENST00000557623 NBPF26B4DH59 902 aa16.25■□□□□ 0.19
SLIRP-211ENST00000557623 CCER2I3L3R5 266 aa16.25■□□□□ 0.19
SLIRP-211ENST00000557623 ZNF853P0CG23 659 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms