RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CCDC141Q6ZP82 1450 aa16.32■□□□□ 0.2
SHMT2-226ENST00000556825 PTPN14Q15678 1187 aa16.31■□□□□ 0.2
SHMT2-226ENST00000556825 ZRSR1Q15695 479 aaKnown RBP16.31■□□□□ 0.2
SHMT2-226ENST00000556825 ERCC6LQ2NKX8 1250 aa16.31■□□□□ 0.2
SHMT2-226ENST00000556825 EFCAB13Q8IY85 973 aa16.31■□□□□ 0.2
SHMT2-226ENST00000556825 IRX1P78414 480 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-226ENST00000556825 FOXD4L5Q5VV16 416 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-226ENST00000556825 FOXD4L4Q8WXT5 416 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-226ENST00000556825 FAXDC2Q96IV6 333 aa16.31■□□□□ 0.2
SHMT2-226ENST00000556825 NPHP1O15259 732 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 FILIP1Q7Z7B0 1213 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 USP26Q9BXU7 913 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 ADAM21Q9UKJ8 722 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 ELP1O95163 1332 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 ST18O60284 1047 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 MIEF2Q96C03 454 aa16.3■□□□□ 0.2
SHMT2-226ENST00000556825 CTAGE5O15320 804 aa16.29■□□□□ 0.2
SHMT2-226ENST00000556825 SMC1AQ14683 1233 aaKnown RBP16.29■□□□□ 0.2
SHMT2-226ENST00000556825 USP48Q86UV5 1035 aa16.29■□□□□ 0.2
SHMT2-226ENST00000556825 ZNF513Q8N8E2 541 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-226ENST00000556825 STAG1Q8WVM7 1258 aa16.29■□□□□ 0.2
SHMT2-226ENST00000556825 ERCC3P19447 782 aa16.29■□□□□ 0.2
SHMT2-226ENST00000556825 ANAPC15P60006 121 aa16.29■□□□□ 0.2
SHMT2-226ENST00000556825 CFAP74Q9C0B2 1584 aa16.28■□□□□ 0.2
SHMT2-226ENST00000556825 MNAT1P51948 309 aa16.28■□□□□ 0.2
SHMT2-226ENST00000556825 CHD1LQ86WJ1 897 aa16.28■□□□□ 0.2
SHMT2-226ENST00000556825 MKRN1Q9UHC7 482 aaKnown RBP16.28■□□□□ 0.2
SHMT2-226ENST00000556825 SYCP2Q9BX26 1530 aa16.28■□□□□ 0.2
SHMT2-226ENST00000556825 PLCH2O75038 1416 aa16.28■□□□□ 0.2
SHMT2-226ENST00000556825 SPAG9O60271 1321 aaKnown RBP16.28■□□□□ 0.2
SHMT2-226ENST00000556825 A0A087WUV0 522 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-226ENST00000556825 SGSM2O43147 1006 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 SMARCA5O60264 1052 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-226ENST00000556825 USP8P40818 1118 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 JAKMIP3Q5VZ66 844 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 L2HGDHQ9H9P8 463 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 NUP155O75694 1391 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 KDM5DQ9BY66 1539 aa16.27■□□□□ 0.2
SHMT2-226ENST00000556825 ARHGAP29Q52LW3 1261 aa16.27■□□□□ 0.19
SHMT2-226ENST00000556825 CASC1Q6TDU7 716 aa16.27■□□□□ 0.19
SHMT2-226ENST00000556825 TADA2BQ86TJ2 420 aa16.27■□□□□ 0.19
SHMT2-226ENST00000556825 LNPKQ9C0E8 428 aa16.27■□□□□ 0.19
SHMT2-226ENST00000556825 IPO7O95373 1038 aaKnown RBP16.26■□□□□ 0.19
SHMT2-226ENST00000556825 EFCAB2Q5VUJ9 269 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 NAIF1Q69YI7 327 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-226ENST00000556825 TTC19Q6DKK2 380 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-226ENST00000556825 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.26■□□□□ 0.19
SHMT2-226ENST00000556825 DZIP1LQ8IYY4 767 aaKnown RBP16.26■□□□□ 0.19
SHMT2-226ENST00000556825 TMEM87AQ8NBN3 555 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 PDRG1Q9NUG6 133 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 ARHGEF12Q9NZN5 1544 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 CDC45O75419 566 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 ATP10AO60312 1499 aa16.26■□□□□ 0.19
SHMT2-226ENST00000556825 AATKQ6ZMQ8 1374 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 COL17A1Q9UMD9 1497 aaPredicted RBP16.25■□□□□ 0.19
SHMT2-226ENST00000556825 DRC7Q8IY82 874 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 GIMAP7Q8NHV1 300 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 PIK3C2GO75747 1445 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 CASTP20810 708 aaKnown RBP16.25■□□□□ 0.19
SHMT2-226ENST00000556825 ZKSCAN2Q63HK3 967 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 TATDN2Q93075 761 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 A1CFQ9NQ94 594 aaKnown RBP16.25■□□□□ 0.19
SHMT2-226ENST00000556825 GNL3LQ9NVN8 582 aaKnown RBP16.25■□□□□ 0.19
SHMT2-226ENST00000556825 NRBP1Q9UHY1 535 aa16.25■□□□□ 0.19
SHMT2-226ENST00000556825 MAST1Q9Y2H9 1570 aa16.24■□□□□ 0.19
SHMT2-226ENST00000556825 NEBLO76041 1014 aa16.24■□□□□ 0.19
SHMT2-226ENST00000556825 TTLL5Q6EMB2 1281 aa16.24■□□□□ 0.19
SHMT2-226ENST00000556825 CACTINQ8WUQ7 758 aaKnown RBP16.24■□□□□ 0.19
SHMT2-226ENST00000556825 PAIP2Q9BPZ3 127 aaKnown RBP16.24■□□□□ 0.19
SHMT2-226ENST00000556825 PRDM16Q9HAZ2 1276 aa16.24■□□□□ 0.19
SHMT2-226ENST00000556825 TBC1D8O95759 1140 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 FOXR1Q6PIV2 292 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 MORC1Q86VD1 984 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 FMNL3Q8IVF7 1028 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 NUCKS1Q9H1E3 243 aaKnown RBP16.23■□□□□ 0.19
SHMT2-226ENST00000556825 RPS6KL1Q9Y6S9 549 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 CCDC93Q567U6 631 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 ORC3Q9UBD5 711 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-226ENST00000556825 DDX19BQ9UMR2 479 aa16.23■□□□□ 0.19
SHMT2-226ENST00000556825 USP27XA6NNY8 438 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 SASH3O75995 380 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 BCL2L13Q9BXK5 485 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 SRRTQ9BXP5 876 aaKnown RBP16.22■□□□□ 0.19
SHMT2-226ENST00000556825 GDPD2Q9HCC8 539 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 ETAA1Q9NY74 926 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 WDR7Q9Y4E6 1490 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 IPO8O15397 1037 aaKnown RBP16.22■□□□□ 0.19
SHMT2-226ENST00000556825 NEMFO60524 1076 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 HNRNPH1P31943 449 aaKnown RBP16.22■□□□□ 0.19
SHMT2-226ENST00000556825 ADCY2Q08462 1091 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 CYB5RLQ6IPT4 315 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 CWC27Q6UX04 472 aaKnown RBP16.22■□□□□ 0.19
SHMT2-226ENST00000556825 ERC1Q8IUD2 1116 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 MICALL1Q8N3F8 863 aa16.22■□□□□ 0.19
SHMT2-226ENST00000556825 NPM1P06748 294 aaKnown RBP eCLIP16.21■□□□□ 0.19
SHMT2-226ENST00000556825 KCND1Q9NSA2 647 aa16.21■□□□□ 0.19
SHMT2-226ENST00000556825 SYNMO15061 1565 aa16.21■□□□□ 0.19
SHMT2-226ENST00000556825 ELF1P32519 619 aa16.21■□□□□ 0.18
SHMT2-226ENST00000556825 GIMAP6Q6P9H5 292 aa16.21■□□□□ 0.18
SHMT2-226ENST00000556825 GBP6Q6ZN66 633 aa16.21■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms