RNA–Protein interactions for RNA: ENST00000556707.5

SDR39U1-221, Transcript of short chain dehydrogenase/reductase family 39U member 1, human

TSL 2

Gene SDR39U1, Length 1,196 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDR39U1-221	ENST00000556707	TSPYL4	Q9UJ04	414 aa		32.18	■■■□□ 2.74
SDR39U1-221	ENST00000556707	SNRPA1	P09661	255 aa	Known RBP	32.17	■■■□□ 2.74
SDR39U1-221	ENST00000556707	ADRA2B	P18089	450 aa		32.17	■■■□□ 2.74
SDR39U1-221	ENST00000556707	TRAPPC3L	Q5T215	181 aa		32.16	■■■□□ 2.74
SDR39U1-221	ENST00000556707	C4A	P0C0L4	1744 aa		32.16	■■■□□ 2.74
SDR39U1-221	ENST00000556707	EIF4A1	P60842	406 aa	Known RBP	32.15	■■■□□ 2.74
SDR39U1-221	ENST00000556707	PTGER2	P43116	358 aa		32.14	■■■□□ 2.74
SDR39U1-221	ENST00000556707	ZBTB1	Q9Y2K1	713 aa		32.14	■■■□□ 2.74
SDR39U1-221	ENST00000556707	LAMB4	A4D0S4	1761 aa		32.14	■■■□□ 2.74
SDR39U1-221	ENST00000556707	CHL1	O00533	1208 aa		32.13	■■■□□ 2.73
SDR39U1-221	ENST00000556707	ARHGEF1	Q92888	912 aa	Known RBP	32.13	■■■□□ 2.73
SDR39U1-221	ENST00000556707	SOS1	Q07889	1333 aa	Predicted RBP	32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	PRAMEF22	A3QJZ6	481 aa		32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	CCDC27	Q2M243	656 aa		32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	NCBP3	Q53F19	620 aa	Known RBP	32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	SGIP1	Q9BQI5	828 aa		32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	USP16	Q9Y5T5	823 aa		32.12	■■■□□ 2.73
SDR39U1-221	ENST00000556707	CALD1	Q05682	793 aa	Known RBP	32.11	■■■□□ 2.73
SDR39U1-221	ENST00000556707	SENP3-EIF4A1	A0A087X0R7	540 aa		32.1	■■■□□ 2.73
SDR39U1-221	ENST00000556707	LAS1L	Q9Y4W2	734 aa	Known RBP	32.1	■■■□□ 2.73
SDR39U1-221	ENST00000556707	GIGYF1	O75420	1035 aa	Predicted RBP	32.09	■■■□□ 2.73
SDR39U1-221	ENST00000556707	MIER1	Q8N108	512 aa		32.09	■■■□□ 2.73
SDR39U1-221	ENST00000556707	CFAP44	Q96MT7	982 aa		32.09	■■■□□ 2.73
SDR39U1-221	ENST00000556707	CANX	P27824	592 aa	Known RBP	32.08	■■■□□ 2.73
SDR39U1-221	ENST00000556707	RFC4	P35249	363 aa		32.08	■■■□□ 2.73
SDR39U1-221	ENST00000556707	MSL1	Q68DK7	614 aa		32.08	■■■□□ 2.73
SDR39U1-221	ENST00000556707	A1BG	P04217	495 aa		32.07	■■■□□ 2.72
SDR39U1-221	ENST00000556707	ZNF853	P0CG23	659 aa		32.06	■■■□□ 2.72
SDR39U1-221	ENST00000556707	WWC1	Q8IX03	1113 aa		32.06	■■■□□ 2.72
SDR39U1-221	ENST00000556707	IFT57	Q9NWB7	429 aa		32.06	■■■□□ 2.72
SDR39U1-221	ENST00000556707	PPP1R1B	Q9UD71	204 aa	Predicted RBP	32.06	■■■□□ 2.72
SDR39U1-221	ENST00000556707	COL15A1	P39059	1388 aa		32.06	■■■□□ 2.72
SDR39U1-221	ENST00000556707	POLD1	P28340	1107 aa		32.05	■■■□□ 2.72
SDR39U1-221	ENST00000556707	EIF5	P55010	431 aa	Known RBP	32.04	■■■□□ 2.72
SDR39U1-221	ENST00000556707	IL6ST	P40189	918 aa	Predicted RBP	32.03	■■■□□ 2.72
SDR39U1-221	ENST00000556707	GNAI1	P63096	354 aa		32.03	■■■□□ 2.72
SDR39U1-221	ENST00000556707	NGEF	Q8N5V2	710 aa		32.02	■■■□□ 2.72
SDR39U1-221	ENST00000556707	MBIP	Q9NS73	344 aa		32.02	■■■□□ 2.72
SDR39U1-221	ENST00000556707	USP42	Q9H9J4	1324 aa	Known RBP	32.01	■■■□□ 2.72
SDR39U1-221	ENST00000556707	SRP68	Q9UHB9	627 aa	Known RBP	32.01	■■■□□ 2.71
SDR39U1-221	ENST00000556707	GYS1	P13807	737 aa		32	■■■□□ 2.71
SDR39U1-221	ENST00000556707	ARX	Q96QS3	562 aa		32	■■■□□ 2.71
SDR39U1-221	ENST00000556707	SALL2	Q9Y467	1007 aa	Predicted RBP	32	■■■□□ 2.71
SDR39U1-221	ENST00000556707		A0A087WZG4	1122 aa		31.99	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NLGN1	Q8N2Q7	840 aa		31.99	■■■□□ 2.71
SDR39U1-221	ENST00000556707	ZPR1	O75312	459 aa		31.98	■■■□□ 2.71
SDR39U1-221	ENST00000556707	PIP4K2A	P48426	406 aa	Predicted RBP	31.98	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NARF	Q9UHQ1	456 aa		31.98	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NBPF26	B4DH59	902 aa		31.97	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NBPF10	Q6P3W6	841 aa	Known RBP	31.97	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NBPF15	Q8N660	670 aa		31.97	■■■□□ 2.71
SDR39U1-221	ENST00000556707	ZNF330	Q9Y3S2	320 aa	Predicted RBP	31.97	■■■□□ 2.71
SDR39U1-221	ENST00000556707	IL16	Q14005	1332 aa		31.97	■■■□□ 2.71
SDR39U1-221	ENST00000556707	KRT24	Q2M2I5	525 aa		31.96	■■■□□ 2.71
SDR39U1-221	ENST00000556707	NPM2	Q86SE8	214 aa	Known RBP	31.96	■■■□□ 2.71
SDR39U1-221	ENST00000556707	USPL1	Q5W0Q7	1092 aa		31.95	■■■□□ 2.71
SDR39U1-221	ENST00000556707	WDR63	Q8IWG1	891 aa		31.94	■■■□□ 2.7
SDR39U1-221	ENST00000556707	ERBB4	Q15303	1308 aa		31.93	■■■□□ 2.7
SDR39U1-221	ENST00000556707	SCN7A	Q01118	1682 aa		31.92	■■■□□ 2.7
SDR39U1-221	ENST00000556707	HOXB7	P09629	217 aa		31.92	■■■□□ 2.7
SDR39U1-221	ENST00000556707	EIF2S2	P20042	333 aa	Known RBP	31.92	■■■□□ 2.7
SDR39U1-221	ENST00000556707	FKBP8	Q14318	412 aa		31.92	■■■□□ 2.7
SDR39U1-221	ENST00000556707	MMP10	P09238	476 aa		31.91	■■■□□ 2.7
SDR39U1-221	ENST00000556707	TBC1D2B	Q9UPU7	963 aa		31.91	■■■□□ 2.7
SDR39U1-221	ENST00000556707	BCOR	Q6W2J9	1755 aa		31.91	■■■□□ 2.7
SDR39U1-221	ENST00000556707	FHDC1	Q9C0D6	1143 aa	Predicted RBP	31.9	■■■□□ 2.7
SDR39U1-221	ENST00000556707	DUSP27	Q5VZP5	1158 aa		31.89	■■■□□ 2.7
SDR39U1-221	ENST00000556707	DZIP3	Q86Y13	1208 aa	Known RBP	31.89	■■■□□ 2.7
SDR39U1-221	ENST00000556707	BCL2L12	Q9HB09	334 aa		31.89	■■■□□ 2.7
SDR39U1-221	ENST00000556707	TSR2	Q969E8	191 aa	Known RBP	31.88	■■■□□ 2.69
SDR39U1-221	ENST00000556707	CAMTA2	O94983	1202 aa		31.86	■■■□□ 2.69
SDR39U1-221	ENST00000556707	ZNF521	Q96K83	1311 aa		31.85	■■■□□ 2.69
SDR39U1-221	ENST00000556707	MYL6B	P14649	208 aa		31.85	■■■□□ 2.69
SDR39U1-221	ENST00000556707	PDIA6	Q15084	440 aa		31.85	■■■□□ 2.69
SDR39U1-221	ENST00000556707	NECTIN2	Q92692	538 aa		31.85	■■■□□ 2.69
SDR39U1-221	ENST00000556707	SYT17	Q9BSW7	474 aa		31.85	■■■□□ 2.69
SDR39U1-221	ENST00000556707	TM4SF1	P30408	202 aa		31.84	■■■□□ 2.69
SDR39U1-221	ENST00000556707	C8orf58	Q8NAV2	365 aa		31.84	■■■□□ 2.69
SDR39U1-221	ENST00000556707	PARP3	Q9Y6F1	533 aa		31.84	■■■□□ 2.69
SDR39U1-221	ENST00000556707	HDGFL1	Q5TGJ6	251 aa		31.83	■■■□□ 2.69
SDR39U1-221	ENST00000556707	KLHL34	Q8N239	644 aa		31.83	■■■□□ 2.69
SDR39U1-221	ENST00000556707	AFDN	P55196	1824 aa	Known RBP	31.82	■■■□□ 2.68
SDR39U1-221	ENST00000556707	NFIX	Q14938	502 aa		31.82	■■■□□ 2.68
SDR39U1-221	ENST00000556707	NUP98	P52948	1817 aa		31.82	■■■□□ 2.68
SDR39U1-221	ENST00000556707	ELL2	O00472	640 aa	Predicted RBP	31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	DDR1	Q08345	913 aa		31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	PROSER3	Q2NL68	480 aa		31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	LRP10	Q7Z4F1	713 aa		31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	DDX21	Q9NR30	783 aa	Known RBP eCLIP	31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	KIF13B	Q9NQT8	1826 aa		31.81	■■■□□ 2.68
SDR39U1-221	ENST00000556707	FANCI	Q9NVI1	1328 aa		31.8	■■■□□ 2.68
SDR39U1-221	ENST00000556707	SPINK5	Q9NQ38	1064 aa	Predicted RBP	31.8	■■■□□ 2.68
SDR39U1-221	ENST00000556707	POLRMT	O00411	1230 aa	Known RBP	31.79	■■■□□ 2.68
SDR39U1-221	ENST00000556707	RGL2	O15211	777 aa		31.79	■■■□□ 2.68
SDR39U1-221	ENST00000556707	ANXA1	P04083	346 aa		31.79	■■■□□ 2.68
SDR39U1-221	ENST00000556707	CLEC4G	Q6UXB4	293 aa		31.79	■■■□□ 2.68
SDR39U1-221	ENST00000556707	CD2AP	Q9Y5K6	639 aa		31.79	■■■□□ 2.68
SDR39U1-221	ENST00000556707	TBC1D9B	Q66K14	1250 aa		31.78	■■■□□ 2.68
SDR39U1-221	ENST00000556707	TTLL7	Q6ZT98	887 aa		31.78	■■■□□ 2.68
SDR39U1-221	ENST00000556707	TSPYL6	Q8N831	410 aa		31.78	■■■□□ 2.68

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms