RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SRP68Q9UHB9 627 aaKnown RBP13.63□□□□□ -0.23
CCDC88C-206ENST00000553437 ZBTB1Q9Y2K1 713 aa13.63□□□□□ -0.23
CCDC88C-206ENST00000553437 NEFMP07197 916 aa13.62□□□□□ -0.23
CCDC88C-206ENST00000553437 FMNL2Q96PY5 1086 aa13.62□□□□□ -0.23
CCDC88C-206ENST00000553437 GOLGB1Q14789 3259 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-206ENST00000553437 USP42Q9H9J4 1324 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-206ENST00000553437 MYH14Q7Z406 1995 aaKnown RBP13.62□□□□□ -0.23
CCDC88C-206ENST00000553437 ZNF316A6NFI3 1004 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-206ENST00000553437 STARD3NLO95772 234 aa13.61□□□□□ -0.23
CCDC88C-206ENST00000553437 TAF7Q15545 349 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-206ENST00000553437 TEX13AQ9BXU3 409 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-206ENST00000553437 EIF5P55010 431 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-206ENST00000553437 FKBP8Q14318 412 aa13.6□□□□□ -0.23
CCDC88C-206ENST00000553437 THUMPD2Q9BTF0 503 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-206ENST00000553437 MIS18AQ9NYP9 233 aa13.6□□□□□ -0.23
CCDC88C-206ENST00000553437 MAPK8IP3Q9UPT6 1336 aa13.6□□□□□ -0.23
CCDC88C-206ENST00000553437 UBR2Q8IWV8 1755 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 PRAMEF22A3QJZ6 481 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 CANXP27824 592 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 C1QTNF8P60827 252 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 USPL1Q5W0Q7 1092 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 NARFQ9UHQ1 456 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 ADAMTS8Q9UP79 889 aa13.59□□□□□ -0.23
CCDC88C-206ENST00000553437 SIPA1L3O60292 1781 aaPredicted RBP13.58□□□□□ -0.23
CCDC88C-206ENST00000553437 A1BGP04217 495 aa13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 TM4SF1P30408 202 aa13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 TMPOP42166 694 aaKnown RBP13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 BCL2L12Q9HB09 334 aa13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 USP16Q9Y5T5 823 aa13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 COL15A1P39059 1388 aa13.58□□□□□ -0.24
CCDC88C-206ENST00000553437 ZPR1O75312 459 aa13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 SNRPA1P09661 255 aaKnown RBP13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 YBX3P16989 372 aaKnown RBP eCLIP13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 RIPK4P57078 832 aa13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 DDR1Q08345 913 aa13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 GPR162Q16538 588 aa13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 CCDC146Q8IYE0 955 aa13.57□□□□□ -0.24
CCDC88C-206ENST00000553437 IL6STP40189 918 aaPredicted RBP13.56□□□□□ -0.24
CCDC88C-206ENST00000553437 WDR43Q15061 677 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88C-206ENST00000553437 PNISRQ8TF01 805 aaKnown RBP13.56□□□□□ -0.24
CCDC88C-206ENST00000553437 RUNDC1Q96C34 613 aa13.56□□□□□ -0.24
CCDC88C-206ENST00000553437 PARP3Q9Y6F1 533 aa13.56□□□□□ -0.24
CCDC88C-206ENST00000553437 VIRMAQ69YN4 1812 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 A0A087WZG4 1122 aa13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 POLRMTO00411 1230 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 EIF4A1P60842 406 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 PELP1Q8IZL8 1130 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 RRP7AQ9Y3A4 280 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 C10orf71Q711Q0 1435 aa13.55□□□□□ -0.24
CCDC88C-206ENST00000553437 TGFB2P61812 414 aa13.54□□□□□ -0.24
CCDC88C-206ENST00000553437 NFIXQ14938 502 aa13.54□□□□□ -0.24
CCDC88C-206ENST00000553437 CCDC184Q52MB2 194 aa13.54□□□□□ -0.24
CCDC88C-206ENST00000553437 TRIM35Q9UPQ4 493 aa13.54□□□□□ -0.24
CCDC88C-206ENST00000553437 TBC1D2BQ9UPU7 963 aa13.54□□□□□ -0.24
CCDC88C-206ENST00000553437 C4AP0C0L4 1744 aa13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 NBPF26B4DH59 902 aa13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 GIGYF1O75420 1035 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 PIP4K2AP48426 406 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 NBPF10Q6P3W6 841 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 NBPF15Q8N660 670 aa13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 PXDNLA1KZ92 1463 aa13.53□□□□□ -0.24
CCDC88C-206ENST00000553437 GRIN3BO60391 1043 aa13.52□□□□□ -0.25
CCDC88C-206ENST00000553437 CAMTA2O94983 1202 aa13.52□□□□□ -0.25
CCDC88C-206ENST00000553437 LMOD3Q0VAK6 560 aa13.52□□□□□ -0.25
CCDC88C-206ENST00000553437 NEUROD2Q15784 382 aa13.52□□□□□ -0.25
CCDC88C-206ENST00000553437 A0A0G2JLW4 131 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 DPEP1P16444 411 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 KCNA3P22001 575 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 BABAM1Q9NWV8 329 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 WWC3Q9ULE0 1092 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 ZNF330Q9Y3S2 320 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 CHD4Q14839 1912 aa13.51□□□□□ -0.25
CCDC88C-206ENST00000553437 SERPINB2P05120 415 aa13.5□□□□□ -0.25
CCDC88C-206ENST00000553437 TBC1D9BQ66K14 1250 aa13.5□□□□□ -0.25
CCDC88C-206ENST00000553437 DZIP3Q86Y13 1208 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-206ENST00000553437 TSPYL4Q9UJ04 414 aa13.5□□□□□ -0.25
CCDC88C-206ENST00000553437 CHL1O00533 1208 aa13.49□□□□□ -0.25
CCDC88C-206ENST00000553437 BICDL1Q6ZP65 573 aa13.49□□□□□ -0.25
CCDC88C-206ENST00000553437 RNF216Q9NWF9 866 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-206ENST00000553437 APAF1O14727 1248 aa13.48□□□□□ -0.25
CCDC88C-206ENST00000553437 NPM2Q86SE8 214 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-206ENST00000553437 DLG5Q8TDM6 1919 aa13.47□□□□□ -0.25
CCDC88C-206ENST00000553437 ANP32CO43423 234 aa13.47□□□□□ -0.25
CCDC88C-206ENST00000553437 KDM3BQ7LBC6 1761 aa13.46□□□□□ -0.25
CCDC88C-206ENST00000553437 RGL2O15211 777 aa13.46□□□□□ -0.25
CCDC88C-206ENST00000553437 CHRNA5P30532 468 aa13.46□□□□□ -0.25
CCDC88C-206ENST00000553437 CLEC4GQ6UXB4 293 aa13.46□□□□□ -0.25
CCDC88C-206ENST00000553437 KIAA1551Q9HCM1 1747 aa13.46□□□□□ -0.25
CCDC88C-206ENST00000553437 KIF13BQ9NQT8 1826 aa13.46□□□□□ -0.26
CCDC88C-206ENST00000553437 PDIA6Q15084 440 aa13.45□□□□□ -0.26
CCDC88C-206ENST00000553437 LRP10Q7Z4F1 713 aa13.45□□□□□ -0.26
CCDC88C-206ENST00000553437 SETDB2Q96T68 719 aa13.45□□□□□ -0.26
CCDC88C-206ENST00000553437 BCS1LQ9Y276 419 aa13.45□□□□□ -0.26
CCDC88C-206ENST00000553437 CARMIL3Q8ND23 1372 aa13.45□□□□□ -0.26
CCDC88C-206ENST00000553437 ERBB4Q15303 1308 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 ZNF853P0CG23 659 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 HLFQ16534 295 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 KRT24Q2M2I5 525 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 PRR5LQ6MZQ0 368 aa13.44□□□□□ -0.26
CCDC88C-206ENST00000553437 TTLL7Q6ZT98 887 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms