RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CABP4P57796 275 aa32.81■■■□□ 2.84
CCDC88C-205ENST00000553403 DDX21Q9NR30 783 aaKnown RBP eCLIP32.81■■■□□ 2.84
CCDC88C-205ENST00000553403 COL22A1Q8NFW1 1626 aaPredicted RBP32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 PI4KAP2A4QPH2 592 aa32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 BEND3Q5T5X7 828 aa32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 LARP1Q6PKG0 1096 aaKnown RBP32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 PI4KAP1Q8N8J0 262 aa32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 UPF2Q9HAU5 1272 aaKnown RBP32.8■■■□□ 2.84
CCDC88C-205ENST00000553403 ADCY9O60503 1353 aa32.79■■■□□ 2.84
CCDC88C-205ENST00000553403 PRAMEF22A3QJZ6 481 aa32.79■■■□□ 2.84
CCDC88C-205ENST00000553403 ATP8B2P98198 1209 aa32.79■■■□□ 2.84
CCDC88C-205ENST00000553403 NKX1-1Q15270 411 aaPredicted RBP32.79■■■□□ 2.84
CCDC88C-205ENST00000553403 STRN4Q9NRL3 753 aa32.79■■■□□ 2.84
CCDC88C-205ENST00000553403 ANXA1P04083 346 aa32.78■■■□□ 2.84
CCDC88C-205ENST00000553403 UBTFL1P0CB47 393 aaPredicted RBP32.78■■■□□ 2.84
CCDC88C-205ENST00000553403 ZNF772Q68DY9 489 aaPredicted RBP32.78■■■□□ 2.84
CCDC88C-205ENST00000553403 TTC5Q8N0Z6 440 aa32.78■■■□□ 2.84
CCDC88C-205ENST00000553403 C5P01031 1676 aa32.77■■■□□ 2.84
CCDC88C-205ENST00000553403 COL14A1Q05707 1796 aaKnown RBP32.76■■■□□ 2.84
CCDC88C-205ENST00000553403 ERVV-2B6SEH9 535 aa32.76■■■□□ 2.84
CCDC88C-205ENST00000553403 PROSER3Q2NL68 480 aa32.76■■■□□ 2.84
CCDC88C-205ENST00000553403 KSR2Q6VAB6 950 aa32.76■■■□□ 2.84
CCDC88C-205ENST00000553403 ANP32EQ9BTT0 268 aa32.76■■■□□ 2.84
CCDC88C-205ENST00000553403 SNRPA1P09661 255 aaKnown RBP32.75■■■□□ 2.83
CCDC88C-205ENST00000553403 ZNF496Q96IT1 587 aaPredicted RBP32.75■■■□□ 2.83
CCDC88C-205ENST00000553403 FMNL2Q96PY5 1086 aa32.75■■■□□ 2.83
CCDC88C-205ENST00000553403 LRRFIP2Q9Y608 721 aaKnown RBP32.75■■■□□ 2.83
CCDC88C-205ENST00000553403 ALDH1L1O75891 902 aa32.74■■■□□ 2.83
CCDC88C-205ENST00000553403 PDIA6Q15084 440 aa32.74■■■□□ 2.83
CCDC88C-205ENST00000553403 PLEKHM2Q8IWE5 1019 aa32.74■■■□□ 2.83
CCDC88C-205ENST00000553403 DDX58O95786 925 aaKnown RBP32.73■■■□□ 2.83
CCDC88C-205ENST00000553403 SHANK3Q9BYB0 1731 aa32.72■■■□□ 2.83
CCDC88C-205ENST00000553403 TBC1D32Q96NH3 1257 aa32.71■■■□□ 2.83
CCDC88C-205ENST00000553403 MAP3K2Q9Y2U5 619 aa32.71■■■□□ 2.83
CCDC88C-205ENST00000553403 C8orf37Q96NL8 207 aa32.7■■■□□ 2.83
CCDC88C-205ENST00000553403 BTG4Q9NY30 223 aa32.7■■■□□ 2.83
CCDC88C-205ENST00000553403 ADAMTS2O95450 1211 aa32.69■■■□□ 2.82
CCDC88C-205ENST00000553403 IBTKQ9P2D0 1353 aaPredicted RBP32.68■■■□□ 2.82
CCDC88C-205ENST00000553403 PNMA6EA0A0J9YXQ4 647 aa32.68■■■□□ 2.82
CCDC88C-205ENST00000553403 AFF2P51816 1311 aa32.68■■■□□ 2.82
CCDC88C-205ENST00000553403 GLI3P10071 1580 aa32.67■■■□□ 2.82
CCDC88C-205ENST00000553403 SSH3Q8TE77 659 aa32.66■■■□□ 2.82
CCDC88C-205ENST00000553403 HDAC5Q9UQL6 1122 aa32.66■■■□□ 2.82
CCDC88C-205ENST00000553403 LAMB4A4D0S4 1761 aa32.65■■■□□ 2.82
CCDC88C-205ENST00000553403 LINS1Q8NG48 757 aa32.65■■■□□ 2.82
CCDC88C-205ENST00000553403 NGLY1Q96IV0 654 aa32.65■■■□□ 2.82
CCDC88C-205ENST00000553403 SMARCA5O60264 1052 aaPredicted RBP32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 POLA2Q14181 598 aa32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 TTC22Q5TAA0 569 aa32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 C16orf71Q8IYS4 520 aaPredicted RBP32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 USP16Q9Y5T5 823 aa32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 PAPPAQ13219 1627 aa32.64■■■□□ 2.82
CCDC88C-205ENST00000553403 DDX54Q8TDD1 881 aaKnown RBP32.63■■■□□ 2.81
CCDC88C-205ENST00000553403 UBR2Q8IWV8 1755 aa32.63■■■□□ 2.81
CCDC88C-205ENST00000553403 NBPF7P0C2Y1 421 aaPredicted RBP32.62■■■□□ 2.81
CCDC88C-205ENST00000553403 ERBB4Q15303 1308 aa32.62■■■□□ 2.81
CCDC88C-205ENST00000553403 DISP2A7MBM2 1401 aa32.62■■■□□ 2.81
CCDC88C-205ENST00000553403 LRP10Q7Z4F1 713 aa32.61■■■□□ 2.81
CCDC88C-205ENST00000553403 LRRCC1Q9C099 1032 aa32.61■■■□□ 2.81
CCDC88C-205ENST00000553403 EXOC6BQ9Y2D4 811 aa32.61■■■□□ 2.81
CCDC88C-205ENST00000553403 APBB1O00213 710 aa32.6■■■□□ 2.81
CCDC88C-205ENST00000553403 GSPT1P15170 499 aaKnown RBP32.6■■■□□ 2.81
CCDC88C-205ENST00000553403 MFAP1P55081 439 aaKnown RBP32.6■■■□□ 2.81
CCDC88C-205ENST00000553403 OSBPL3Q9H4L5 887 aa32.6■■■□□ 2.81
CCDC88C-205ENST00000553403 EIF5BO60841 1220 aaKnown RBP32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 AIMP1Q12904 312 aaKnown RBP32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 PPP1R42Q7Z4L9 355 aa32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 XAGE3Q8WTP9 111 aa32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 DAXXQ9UER7 740 aaPredicted RBP32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 UTYO14607 1347 aa32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 RXRBP28702 533 aa32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 RIC3Q7Z5B4 369 aa32.59■■■□□ 2.81
CCDC88C-205ENST00000553403 TNS2Q63HR2 1409 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 PLCH1Q4KWH8 1693 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 RAB11FIP3O75154 756 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 CDC45O75419 566 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 MYL6BP14649 208 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 OTUD7AQ8TE49 926 aaPredicted RBP32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 C22orf23Q9BZE7 217 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 C9orf78Q9NZ63 289 aaPredicted RBP32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 KCPQ6ZWJ8 1503 aa32.58■■■□□ 2.81
CCDC88C-205ENST00000553403 MTX1Q13505 466 aa32.57■■■□□ 2.8
CCDC88C-205ENST00000553403 COPS6Q7L5N1 327 aa32.57■■■□□ 2.8
CCDC88C-205ENST00000553403 USP35Q9P2H5 1018 aa32.56■■■□□ 2.8
CCDC88C-205ENST00000553403 NEXNQ0ZGT2 675 aa32.55■■■□□ 2.8
CCDC88C-205ENST00000553403 TBC1D9Q6ZT07 1266 aa32.55■■■□□ 2.8
CCDC88C-205ENST00000553403 METTL22Q9BUU2 404 aaPredicted RBP32.55■■■□□ 2.8
CCDC88C-205ENST00000553403 TOGARAM1Q9Y4F4 1720 aa32.54■■■□□ 2.8
CCDC88C-205ENST00000553403 CWF19L2Q2TBE0 894 aaKnown RBP32.54■■■□□ 2.8
CCDC88C-205ENST00000553403 SALL3Q9BXA9 1300 aa32.54■■■□□ 2.8
CCDC88C-205ENST00000553403 GRM8O00222 908 aa32.53■■■□□ 2.8
CCDC88C-205ENST00000553403 SRGAP3O43295 1099 aa32.53■■■□□ 2.8
CCDC88C-205ENST00000553403 QTRT2Q9H974 415 aaKnown RBP32.53■■■□□ 2.8
CCDC88C-205ENST00000553403 ANKRD13DQ6ZTN6 518 aa32.53■■■□□ 2.8
CCDC88C-205ENST00000553403 PDE1AP54750 535 aa32.52■■■□□ 2.8
CCDC88C-205ENST00000553403 HSP90AB4PQ58FF6 505 aa32.52■■■□□ 2.8
CCDC88C-205ENST00000553403 IGKV5-2P06315 115 aa32.51■■■□□ 2.79
CCDC88C-205ENST00000553403 BECN1Q14457 450 aa32.51■■■□□ 2.79
CCDC88C-205ENST00000553403 TMOD3Q9NYL9 352 aa32.51■■■□□ 2.79
CCDC88C-205ENST00000553403 USP21Q9UK80 565 aa32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms