RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 STK24Q9Y6E0 443 aa14.81□□□□□ -0.04
VPS29-208ENST00000550267 TATP17735 454 aaPredicted RBP14.8□□□□□ -0.04
VPS29-208ENST00000550267 SMIM5Q71RC9 77 aa14.8□□□□□ -0.04
VPS29-208ENST00000550267 AMIGO3Q86WK7 504 aa14.8□□□□□ -0.04
VPS29-208ENST00000550267 CGNL1Q0VF96 1302 aa14.8□□□□□ -0.04
VPS29-208ENST00000550267 IGSF1Q8N6C5 1336 aa14.8□□□□□ -0.04
VPS29-208ENST00000550267 RTL1A6NKG5 1358 aa14.8□□□□□ -0.04
VPS29-208ENST00000550267 PHF14O94880 888 aa14.79□□□□□ -0.04
VPS29-208ENST00000550267 MPRIPQ6WCQ1 1025 aa14.79□□□□□ -0.04
VPS29-208ENST00000550267 AK7Q96M32 723 aa14.79□□□□□ -0.04
VPS29-208ENST00000550267 C4BP0C0L5 1744 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 TOGARAM1Q9Y4F4 1720 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 PCDH11XQ9BZA7 1347 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 PCDH11YQ9BZA8 1340 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 ZNF687Q8N1G0 1237 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 TAF1LQ8IZX4 1826 aa14.78□□□□□ -0.04
VPS29-208ENST00000550267 SMG6Q86US8 1419 aaKnown RBP14.77□□□□□ -0.04
VPS29-208ENST00000550267 KIF3CO14782 793 aa14.77□□□□□ -0.05
VPS29-208ENST00000550267 MFRPQ9BY79 579 aa14.77□□□□□ -0.05
VPS29-208ENST00000550267 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.76□□□□□ -0.05
VPS29-208ENST00000550267 HMGB2P26583 209 aaKnown RBP14.76□□□□□ -0.05
VPS29-208ENST00000550267 TESK2Q96S53 571 aa14.76□□□□□ -0.05
VPS29-208ENST00000550267 GGNBP2Q9H3C7 697 aa14.76□□□□□ -0.05
VPS29-208ENST00000550267 CYP27B1O15528 508 aa14.75□□□□□ -0.05
VPS29-208ENST00000550267 ECM2O94769 699 aaPredicted RBP14.75□□□□□ -0.05
VPS29-208ENST00000550267 ST20-MTHFSA0A0A6YYL1 179 aa14.74□□□□□ -0.05
VPS29-208ENST00000550267 STK25O00506 426 aa14.74□□□□□ -0.05
VPS29-208ENST00000550267 FYB1O15117 783 aa14.74□□□□□ -0.05
VPS29-208ENST00000550267 HSP90AB2PQ58FF8 381 aa14.74□□□□□ -0.05
VPS29-208ENST00000550267 SMARCC1Q92922 1105 aaPredicted RBP14.74□□□□□ -0.05
VPS29-208ENST00000550267 INSRP06213 1382 aa14.73□□□□□ -0.05
VPS29-208ENST00000550267 PIGBQ92521 554 aa14.73□□□□□ -0.05
VPS29-208ENST00000550267 UBR3Q6ZT12 1888 aa14.73□□□□□ -0.05
VPS29-208ENST00000550267 NSD3Q9BZ95 1437 aa14.73□□□□□ -0.05
VPS29-208ENST00000550267 SSFA2P28290 1259 aa14.72□□□□□ -0.05
VPS29-208ENST00000550267 ARSIQ5FYB1 569 aa14.72□□□□□ -0.05
VPS29-208ENST00000550267 LINC00116Q8NCU8 138 aa14.72□□□□□ -0.05
VPS29-208ENST00000550267 CICQ96RK0 1608 aaPredicted RBP14.72□□□□□ -0.05
VPS29-208ENST00000550267 ITGB4P16144 1822 aa14.71□□□□□ -0.05
VPS29-208ENST00000550267 FLT4P35916 1363 aa14.71□□□□□ -0.06
VPS29-208ENST00000550267 LOC102724428A0A0B4J2F2 783 aa14.7□□□□□ -0.06
VPS29-208ENST00000550267 APLP1P51693 650 aa14.7□□□□□ -0.06
VPS29-208ENST00000550267 SIK1P57059 783 aa14.7□□□□□ -0.06
VPS29-208ENST00000550267 TONSLQ96HA7 1378 aa14.7□□□□□ -0.06
VPS29-208ENST00000550267 PXDNLA1KZ92 1463 aa14.69□□□□□ -0.06
VPS29-208ENST00000550267 PKD1L3Q7Z443 1732 aa14.69□□□□□ -0.06
VPS29-208ENST00000550267 MAP2P11137 1827 aaKnown RBP14.69□□□□□ -0.06
VPS29-208ENST00000550267 GNPATO15228 680 aa14.69□□□□□ -0.06
VPS29-208ENST00000550267 MMP10P09238 476 aa14.68□□□□□ -0.06
VPS29-208ENST00000550267 ITPK1Q13572 414 aa14.68□□□□□ -0.06
VPS29-208ENST00000550267 NKX1-1Q15270 411 aaPredicted RBP14.68□□□□□ -0.06
VPS29-208ENST00000550267 KIF24Q5T7B8 1368 aa14.68□□□□□ -0.06
VPS29-208ENST00000550267 TOMM70O94826 608 aa14.67□□□□□ -0.06
VPS29-208ENST00000550267 DNAJC5GQ8N7S2 189 aa14.67□□□□□ -0.06
VPS29-208ENST00000550267 ASAP1Q9ULH1 1129 aa14.67□□□□□ -0.06
VPS29-208ENST00000550267 EMILIN1Q9Y6C2 1016 aa14.67□□□□□ -0.06
VPS29-208ENST00000550267 NCAPD2Q15021 1401 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 KIAA1551Q9HCM1 1747 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 SLC24A1O60721 1099 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 ATP6V1AP38606 617 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 TMOD3Q9NYL9 352 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 SPG7Q9UQ90 795 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 BCS1LQ9Y276 419 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 KIF20BQ96Q89 1820 aa14.66□□□□□ -0.06
VPS29-208ENST00000550267 A0A0G2JLW4 131 aa14.65□□□□□ -0.06
VPS29-208ENST00000550267 ZNF316A6NFI3 1004 aaPredicted RBP14.65□□□□□ -0.06
VPS29-208ENST00000550267 ARHGAP27Q6ZUM4 889 aa14.65□□□□□ -0.06
VPS29-208ENST00000550267 RNF166Q96A37 237 aaPredicted RBP14.65□□□□□ -0.06
VPS29-208ENST00000550267 NMRK2Q9NPI5 230 aa14.65□□□□□ -0.06
VPS29-208ENST00000550267 N4BP2Q86UW6 1770 aaPredicted RBP14.65□□□□□ -0.06
VPS29-208ENST00000550267 TGFB2P61812 414 aa14.64□□□□□ -0.07
VPS29-208ENST00000550267 ATG3Q9NT62 314 aa14.64□□□□□ -0.07
VPS29-208ENST00000550267 KIF13BQ9NQT8 1826 aa14.64□□□□□ -0.07
VPS29-208ENST00000550267 C2orf72A6NCS6 295 aa14.63□□□□□ -0.07
VPS29-208ENST00000550267 RGL2O15211 777 aa14.63□□□□□ -0.07
VPS29-208ENST00000550267 PPM1GO15355 546 aaPredicted RBP14.63□□□□□ -0.07
VPS29-208ENST00000550267 TMF1P82094 1093 aa14.63□□□□□ -0.07
VPS29-208ENST00000550267 KHSRPQ92945 711 aaKnown RBP eCLIP14.63□□□□□ -0.07
VPS29-208ENST00000550267 C10orf71Q711Q0 1435 aa14.63□□□□□ -0.07
VPS29-208ENST00000550267 PHKG2P15735 406 aa14.62□□□□□ -0.07
VPS29-208ENST00000550267 DPEP1P16444 411 aa14.62□□□□□ -0.07
VPS29-208ENST00000550267 EYA1Q99502 592 aa14.62□□□□□ -0.07
VPS29-208ENST00000550267 FCHSD2O94868 740 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 HTRA3P83110 453 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 TRAPPC3LQ5T215 181 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 IFNL2Q8IZJ0 200 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 NLGN1Q8N2Q7 840 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 CARD14Q9BXL6 1004 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 RTCBQ9Y3I0 505 aaKnown RBP14.61□□□□□ -0.07
VPS29-208ENST00000550267 WDR90Q96KV7 1748 aa14.61□□□□□ -0.07
VPS29-208ENST00000550267 KDRP35968 1356 aa14.6□□□□□ -0.07
VPS29-208ENST00000550267 SLC4A9Q96Q91 983 aa14.6□□□□□ -0.07
VPS29-208ENST00000550267 CCDC87Q9NVE4 849 aa14.6□□□□□ -0.07
VPS29-208ENST00000550267 C4AP0C0L4 1744 aa14.59□□□□□ -0.07
VPS29-208ENST00000550267 GYS1P13807 737 aa14.59□□□□□ -0.07
VPS29-208ENST00000550267 C9orf131Q5VYM1 1079 aa14.59□□□□□ -0.07
VPS29-208ENST00000550267 RBM46Q8TBY0 533 aaKnown RBP14.59□□□□□ -0.07
VPS29-208ENST00000550267 ARHGEF1Q92888 912 aaKnown RBP14.59□□□□□ -0.07
VPS29-208ENST00000550267 WASHC2AQ641Q2 1341 aa14.59□□□□□ -0.07
VPS29-208ENST00000550267 ANKRD26Q9UPS8 1709 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms