RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PRAMEF22A3QJZ6 481 aa22.77■■□□□ 1.24
PRPF40B-208ENST00000548436 PROSER3Q2NL68 480 aa22.77■■□□□ 1.23
PRPF40B-208ENST00000548436 TNPO1Q92973 898 aaKnown RBP22.77■■□□□ 1.23
PRPF40B-208ENST00000548436 COL18A1P39060 1754 aa22.76■■□□□ 1.23
PRPF40B-208ENST00000548436 IL1RAPL2Q9NP60 686 aa22.76■■□□□ 1.23
PRPF40B-208ENST00000548436 SCN11AQ9UI33 1791 aa22.76■■□□□ 1.23
PRPF40B-208ENST00000548436 RAB3GAP1Q15042 981 aa22.75■■□□□ 1.23
PRPF40B-208ENST00000548436 AK9Q5TCS8 1911 aa22.75■■□□□ 1.23
PRPF40B-208ENST00000548436 SURF6O75683 361 aaKnown RBP22.75■■□□□ 1.23
PRPF40B-208ENST00000548436 SRGAP3O43295 1099 aa22.74■■□□□ 1.23
PRPF40B-208ENST00000548436 RAB11FIP3O75154 756 aa22.73■■□□□ 1.23
PRPF40B-208ENST00000548436 BRPF3Q9ULD4 1205 aa22.73■■□□□ 1.23
PRPF40B-208ENST00000548436 MAP3K2Q9Y2U5 619 aa22.73■■□□□ 1.23
PRPF40B-208ENST00000548436 TRIM6-TRIM34B2RNG4 842 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 UNC5CLQ8IV45 518 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 IL27Q8NEV9 243 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 RILPL2Q969X0 211 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 ESYT1Q9BSJ8 1104 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 NLRP2Q9NX02 1062 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 DCCP43146 1447 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 TRAK2O60296 914 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 NUTM1Q86Y26 1132 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 RHPN1Q8TCX5 695 aa22.72■■□□□ 1.23
PRPF40B-208ENST00000548436 STRCQ7RTU9 1775 aa22.71■■□□□ 1.23
PRPF40B-208ENST00000548436 AOX1Q06278 1338 aa22.71■■□□□ 1.23
PRPF40B-208ENST00000548436 CHMLP26374 656 aa22.71■■□□□ 1.23
PRPF40B-208ENST00000548436 RAPGEF4Q8WZA2 1011 aa22.71■■□□□ 1.23
PRPF40B-208ENST00000548436 DDX11L8A8MPP1 907 aa22.7■■□□□ 1.23
PRPF40B-208ENST00000548436 KSR2Q6VAB6 950 aa22.7■■□□□ 1.23
PRPF40B-208ENST00000548436 CABLES1Q8TDN4 633 aa22.7■■□□□ 1.23
PRPF40B-208ENST00000548436 C5P01031 1676 aa22.7■■□□□ 1.22
PRPF40B-208ENST00000548436 KDM6AO15550 1401 aaPredicted RBP22.7■■□□□ 1.22
PRPF40B-208ENST00000548436 MEGF6O75095 1541 aa22.69■■□□□ 1.22
PRPF40B-208ENST00000548436 NPHP3Q7Z494 1330 aa22.69■■□□□ 1.22
PRPF40B-208ENST00000548436 KIF1BPQ96EK5 621 aa22.69■■□□□ 1.22
PRPF40B-208ENST00000548436 ALDH1L1O75891 902 aa22.68■■□□□ 1.22
PRPF40B-208ENST00000548436 SLC39A6Q13433 755 aa22.68■■□□□ 1.22
PRPF40B-208ENST00000548436 HYPKQ9NX55 129 aa22.68■■□□□ 1.22
PRPF40B-208ENST00000548436 PHKG2P15735 406 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 TATP17735 454 aaPredicted RBP22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 GZF1Q9H116 711 aaPredicted RBP22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 SLC52A2Q9HAB3 445 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 ST18O60284 1047 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 PDIA6Q15084 440 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 CWF19L2Q2TBE0 894 aaKnown RBP22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 TNS3Q68CZ2 1445 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 ZNF790Q6PG37 636 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 PI4K2BQ8TCG2 481 aa22.67■■□□□ 1.22
PRPF40B-208ENST00000548436 SSFA2P28290 1259 aa22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 MTX1Q13505 466 aa22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 GBP4Q96PP9 640 aa22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 DDX21Q9NR30 783 aaKnown RBP eCLIP22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 C9orf78Q9NZ63 289 aaPredicted RBP22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 CHRNA2Q15822 529 aa22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 CADPS2Q86UW7 1296 aa22.66■■□□□ 1.22
PRPF40B-208ENST00000548436 NFATC2IPQ8NCF5 419 aa22.65■■□□□ 1.22
PRPF40B-208ENST00000548436 SPG7Q9UQ90 795 aa22.65■■□□□ 1.22
PRPF40B-208ENST00000548436 XIRP1Q702N8 1843 aaKnown RBP22.64■■□□□ 1.22
PRPF40B-208ENST00000548436 ABCC6O95255 1503 aa22.64■■□□□ 1.21
PRPF40B-208ENST00000548436 CSB-PGBD3P0DP91 1061 aa22.64■■□□□ 1.21
PRPF40B-208ENST00000548436 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.64■■□□□ 1.21
PRPF40B-208ENST00000548436 MAP4K4O95819 1239 aaPredicted RBP22.63■■□□□ 1.21
PRPF40B-208ENST00000548436 AIMP1Q12904 312 aaKnown RBP22.63■■□□□ 1.21
PRPF40B-208ENST00000548436 HSP90AB4PQ58FF6 505 aa22.63■■□□□ 1.21
PRPF40B-208ENST00000548436 IL25Q9H293 177 aa22.63■■□□□ 1.21
PRPF40B-208ENST00000548436 ANO2Q9NQ90 1003 aa22.63■■□□□ 1.21
PRPF40B-208ENST00000548436 LINS1Q8NG48 757 aa22.62■■□□□ 1.21
PRPF40B-208ENST00000548436 PALD1Q9ULE6 856 aa22.62■■□□□ 1.21
PRPF40B-208ENST00000548436 IFNL2Q8IZJ0 200 aa22.62■■□□□ 1.21
PRPF40B-208ENST00000548436 PKD1L3Q7Z443 1732 aa22.62■■□□□ 1.21
PRPF40B-208ENST00000548436 SPATA31A3Q5VYP0 1347 aa22.62■■□□□ 1.21
PRPF40B-208ENST00000548436 DDX58O95786 925 aaKnown RBP22.61■■□□□ 1.21
PRPF40B-208ENST00000548436 GRM8O00222 908 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 CYP27B1O15528 508 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 NEK4P51957 841 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 OS9Q13438 667 aaPredicted RBP22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 CLEC17AQ6ZS10 378 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 KAZALD1Q96I82 304 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 UTYO14607 1347 aa22.6■■□□□ 1.21
PRPF40B-208ENST00000548436 FSD2A1L4K1 749 aa22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 MCCP23508 829 aa22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 ZGPATQ8N5A5 531 aaKnown RBP22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 ZNF496Q96IT1 587 aaPredicted RBP22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 PA2G4Q9UQ80 394 aaKnown RBP22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 USP42Q9H9J4 1324 aaKnown RBP22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 L1TD1Q5T7N2 865 aaKnown RBP22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 SUCLG2Q96I99 432 aa22.59■■□□□ 1.21
PRPF40B-208ENST00000548436 MRC1P22897 1456 aa22.58■■□□□ 1.21
PRPF40B-208ENST00000548436 IGKV5-2P06315 115 aa22.58■■□□□ 1.21
PRPF40B-208ENST00000548436 MYL6BP14649 208 aa22.58■■□□□ 1.21
PRPF40B-208ENST00000548436 ANAPC15P60006 121 aa22.58■■□□□ 1.21
PRPF40B-208ENST00000548436 CYP2E1P05181 493 aaPredicted RBP22.58■■□□□ 1.2
PRPF40B-208ENST00000548436 PKP1Q13835 747 aa22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 RIC3Q7Z5B4 369 aa22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 DCAF5Q96JK2 942 aa22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 CWC22Q9HCG8 908 aaKnown RBP22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 HDAC5Q9UQL6 1122 aa22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 CPDO75976 1380 aa22.57■■□□□ 1.2
PRPF40B-208ENST00000548436 GOLGA6L3A6NEY3 463 aa22.56■■□□□ 1.2
PRPF40B-208ENST00000548436 BAG4O95429 457 aaKnown RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms