RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PBXIP1Q96AQ6 731 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 YTHDC2Q9H6S0 1430 aaKnown RBP7.01□□□□□ -1.29
LIMA1-203ENST00000547825 TCERG1O14776 1098 aaKnown RBP7.01□□□□□ -1.29
LIMA1-203ENST00000547825 TNNT2P45379 298 aaPredicted RBP7.01□□□□□ -1.29
LIMA1-203ENST00000547825 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.01□□□□□ -1.29
LIMA1-203ENST00000547825 PNMA3Q9UL41 463 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 LHX6Q9UPM6 363 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 CAMTA1Q9Y6Y1 1673 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 C7P10643 843 aa7.01□□□□□ -1.29
LIMA1-203ENST00000547825 PNNQ9H307 717 aaKnown RBP7.01□□□□□ -1.29
LIMA1-203ENST00000547825 ADGRF5Q8IZF2 1346 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 LRP6O75581 1613 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 KDM4AO75164 1064 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 HOXB3P14651 431 aaPredicted RBP7□□□□□ -1.29
LIMA1-203ENST00000547825 CLCN6P51797 869 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 ESF1Q9H501 851 aaKnown RBP7□□□□□ -1.29
LIMA1-203ENST00000547825 EIF2AK3Q9NZJ5 1116 aaKnown RBP7□□□□□ -1.29
LIMA1-203ENST00000547825 USP47Q96K76 1375 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 ATP7BP35670 1465 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 PPP1R12CQ9BZL4 782 aa7□□□□□ -1.29
LIMA1-203ENST00000547825 TMEM94Q12767 1356 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 GPR153Q6NV75 609 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 TXNDC2Q86VQ3 553 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 SYMPKQ92797 1274 aaKnown RBP6.99□□□□□ -1.29
LIMA1-203ENST00000547825 TATDN2Q93075 761 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 C14orf93Q9H972 538 aaKnown RBP6.99□□□□□ -1.29
LIMA1-203ENST00000547825 PALM3A6NDB9 673 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-203ENST00000547825 HOXA2O43364 376 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 TUSC1Q2TAM9 212 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 SULF1Q8IWU6 871 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 C1orf167Q5SNV9 1468 aa6.99□□□□□ -1.29
LIMA1-203ENST00000547825 DNAJB2P25686 324 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 KIF20BQ96Q89 1820 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 CFAP99D6REC4 459 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 SLC10A3P09131 477 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 LMOD1P29536 600 aaPredicted RBP6.98□□□□□ -1.29
LIMA1-203ENST00000547825 STAC3Q96MF2 364 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 NDUFB9Q9Y6M9 179 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 ANKARQ7Z5J8 1434 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 IGSF3O75054 1194 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 PRR7Q8TB68 274 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 DCAF11Q8TEB1 546 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 SHANK3Q9BYB0 1731 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 SSH2Q76I76 1423 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 THSD7AQ9UPZ6 1657 aa6.98□□□□□ -1.29
LIMA1-203ENST00000547825 FDX1P10109 184 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 TFIP11Q9UBB9 837 aaKnown RBP6.97□□□□□ -1.29
LIMA1-203ENST00000547825 BRWD3Q6RI45 1802 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 CD163L1Q9NR16 1453 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 VIRMAQ69YN4 1812 aaKnown RBP6.97□□□□□ -1.29
LIMA1-203ENST00000547825 DNTTIP2Q5QJE6 756 aaKnown RBP6.97□□□□□ -1.29
LIMA1-203ENST00000547825 SLIT3O75094 1523 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 POTEJP0CG39 1038 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 RGPD5Q99666 1765 aa6.97□□□□□ -1.29
LIMA1-203ENST00000547825 NFKBIBQ15653 356 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 C20orf194Q5TEA3 1177 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 WWC1Q8IX03 1113 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 INSRP06213 1382 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 ABCC6O95255 1503 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 PEAK1Q9H792 1746 aa6.96□□□□□ -1.29
LIMA1-203ENST00000547825 ZBTB3Q9H5J0 574 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 KNSTRNQ9Y448 316 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 IVNS1ABPQ9Y6Y0 642 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 PLEKHH1Q9ULM0 1364 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 SBNO2Q9Y2G9 1366 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 LTN1O94822 1766 aa6.96□□□□□ -1.3
LIMA1-203ENST00000547825 PER1O15534 1290 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-203ENST00000547825 HSP90AA2PQ14568 343 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-203ENST00000547825 ALG2Q9H553 416 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 COL14A1Q05707 1796 aaKnown RBP6.95□□□□□ -1.3
LIMA1-203ENST00000547825 PTMAP06454 111 aaKnown RBP6.95□□□□□ -1.3
LIMA1-203ENST00000547825 RGPD3A6NKT7 1758 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-203ENST00000547825 RGPD4Q7Z3J3 1758 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 TRIM6-TRIM34B2RNG4 842 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 CRBNQ96SW2 442 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 BCL2L12Q9HB09 334 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 USP35Q9P2H5 1018 aa6.95□□□□□ -1.3
LIMA1-203ENST00000547825 FRAT2O75474 233 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-203ENST00000547825 GCGRP47871 477 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 PARP4Q9UKK3 1724 aaKnown RBP6.94□□□□□ -1.3
LIMA1-203ENST00000547825 TMEM88BA6NKF7 163 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 BRD1O95696 1058 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 EID1Q9Y6B2 187 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 FAM208AQ9UK61 1670 aaKnown RBP6.94□□□□□ -1.3
LIMA1-203ENST00000547825 SBF2Q86WG5 1849 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 DISP3Q9P2K9 1392 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 ST20-MTHFSA0A0A6YYL1 179 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 NR6A1Q15406 480 aa6.94□□□□□ -1.3
LIMA1-203ENST00000547825 L1TD1Q5T7N2 865 aaKnown RBP6.94□□□□□ -1.3
LIMA1-203ENST00000547825 PRPF38BQ5VTL8 546 aaKnown RBP6.94□□□□□ -1.3
LIMA1-203ENST00000547825 PPP1R3GB7ZBB8 358 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 RRP1P56182 461 aaKnown RBP6.93□□□□□ -1.3
LIMA1-203ENST00000547825 TBC1D9Q6ZT07 1266 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 FTSJ3Q8IY81 847 aaKnown RBP6.93□□□□□ -1.3
LIMA1-203ENST00000547825 PRM3Q9NNZ6 103 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 TNS1Q9HBL0 1735 aaKnown RBP6.93□□□□□ -1.3
LIMA1-203ENST00000547825 COL24A1Q17RW2 1714 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 GJA5P36382 358 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 NBPF1Q3BBV0 1214 aa6.93□□□□□ -1.3
LIMA1-203ENST00000547825 SEPT9Q9UHD8 586 aaPredicted RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms