RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PNMA6EA0A0J9YXQ4 647 aa18.64■□□□□ 0.58
CUX1-211ENST00000546411 HYPKQ9NX55 129 aa18.64■□□□□ 0.58
CUX1-211ENST00000546411 LIMCH1Q9UPQ0 1083 aa18.64■□□□□ 0.57
CUX1-211ENST00000546411 METP08581 1390 aa18.64■□□□□ 0.57
CUX1-211ENST00000546411 CHMP4CQ96CF2 233 aa18.64■□□□□ 0.57
CUX1-211ENST00000546411 GUCY1B3Q02153 619 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 XAGE3Q8WTP9 111 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 SNX21Q969T3 373 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 ME1P48163 572 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 KINO60870 393 aaKnown RBP18.63■□□□□ 0.57
CUX1-211ENST00000546411 CPA1P15085 419 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 SPATA32Q96LK8 384 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 USP26Q9BXU7 913 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 ORAI2Q96SN7 254 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 TNMDQ9H2S6 317 aa18.63■□□□□ 0.57
CUX1-211ENST00000546411 GCP02774 474 aa18.62■□□□□ 0.57
CUX1-211ENST00000546411 CCDC34Q96HJ3 373 aa18.62■□□□□ 0.57
CUX1-211ENST00000546411 ZCCHC11Q5TAX3 1644 aaKnown RBP18.62■□□□□ 0.57
CUX1-211ENST00000546411 IDH1O75874 414 aaKnown RBP18.62■□□□□ 0.57
CUX1-211ENST00000546411 NFATC2IPQ8NCF5 419 aa18.62■□□□□ 0.57
CUX1-211ENST00000546411 NUTM2BA6NNL0 878 aaPredicted RBP18.61■□□□□ 0.57
CUX1-211ENST00000546411 NUTM2EB1AL46 878 aaPredicted RBP18.61■□□□□ 0.57
CUX1-211ENST00000546411 GPTP24298 496 aa18.61■□□□□ 0.57
CUX1-211ENST00000546411 ANKRD1Q15327 319 aa18.61■□□□□ 0.57
CUX1-211ENST00000546411 NUTM2AQ8IVF1 878 aaPredicted RBP18.61■□□□□ 0.57
CUX1-211ENST00000546411 TBC1D2BQ9UPU7 963 aa18.61■□□□□ 0.57
CUX1-211ENST00000546411 DDX46Q7L014 1031 aaKnown RBP18.61■□□□□ 0.57
CUX1-211ENST00000546411 LRRC2Q9BYS8 371 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 ANKRD13DQ6ZTN6 518 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 CCAR2Q8N163 923 aaKnown RBP18.6■□□□□ 0.57
CUX1-211ENST00000546411 ERICH2A1L162 156 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 RAD21O60216 631 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 STK38Q15208 465 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 KLHL40Q2TBA0 621 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 CCDC192P0DO97 292 aa18.6■□□□□ 0.57
CUX1-211ENST00000546411 RBM25P49756 843 aaKnown RBP18.6■□□□□ 0.57
CUX1-211ENST00000546411 ZSCAN31Q96LW9 406 aaPredicted RBP18.6■□□□□ 0.57
CUX1-211ENST00000546411 GOLIM4O00461 696 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 NBPF7P0C2Y1 421 aaPredicted RBP18.59■□□□□ 0.57
CUX1-211ENST00000546411 TPD52L1Q16890 204 aaPredicted RBP18.59■□□□□ 0.57
CUX1-211ENST00000546411 ZFYVE16Q7Z3T8 1539 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 TRPM1Q7Z4N2 1603 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 GSPT1P15170 499 aaKnown RBP18.59■□□□□ 0.57
CUX1-211ENST00000546411 CCT2P78371 535 aaKnown RBP18.59■□□□□ 0.57
CUX1-211ENST00000546411 KLHDC4Q8TBB5 520 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 USP25Q9UHP3 1055 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 TBX22Q9Y458 520 aa18.59■□□□□ 0.57
CUX1-211ENST00000546411 SYNMO15061 1565 aa18.58■□□□□ 0.57
CUX1-211ENST00000546411 GJB2P29033 226 aa18.58■□□□□ 0.57
CUX1-211ENST00000546411 RAB3GAP1Q15042 981 aa18.58■□□□□ 0.57
CUX1-211ENST00000546411 CKAP2LQ8IYA6 745 aa18.58■□□□□ 0.57
CUX1-211ENST00000546411 IFNL2Q8IZJ0 200 aa18.58■□□□□ 0.57
CUX1-211ENST00000546411 GRM8O00222 908 aa18.58■□□□□ 0.56
CUX1-211ENST00000546411 IFIT1P09914 478 aaKnown RBP18.58■□□□□ 0.56
CUX1-211ENST00000546411 RAB11FIP4Q86YS3 637 aa18.58■□□□□ 0.56
CUX1-211ENST00000546411 USP19O94966 1318 aa18.58■□□□□ 0.56
CUX1-211ENST00000546411 CHMLP26374 656 aa18.58■□□□□ 0.56
CUX1-211ENST00000546411 G3V3G9 751 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 STX6O43752 255 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 ZSCAN23Q3MJ62 389 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 DCAF8Q5TAQ9 597 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 EVI5LQ96CN4 794 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 ZSCAN30Q86W11 494 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 AKAP4Q5JQC9 854 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 NBPF6Q5VWK0 638 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 HOMER1Q86YM7 354 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 NBPF4Q96M43 638 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 MAP3K5Q99683 1374 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 SAFBQ15424 915 aaKnown RBP eCLIP18.57■□□□□ 0.56
CUX1-211ENST00000546411 MPHOSPH8Q99549 860 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 NUP62CLQ9H1M0 184 aa18.57■□□□□ 0.56
CUX1-211ENST00000546411 KCNQ3O43525 872 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 HAND2P61296 217 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 METTL24Q5JXM2 366 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 KSR2Q6VAB6 950 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 ADCY10Q96PN6 1610 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 MYOM2P54296 1465 aa18.56■□□□□ 0.56
CUX1-211ENST00000546411 LETM1O95202 739 aaPredicted RBP18.56■□□□□ 0.56
CUX1-211ENST00000546411 CLTCL1P53675 1640 aa18.55■□□□□ 0.56
CUX1-211ENST00000546411 CDC42BPBQ9Y5S2 1711 aa18.55■□□□□ 0.56
CUX1-211ENST00000546411 DDX17Q92841 729 aaKnown RBP18.55■□□□□ 0.56
CUX1-211ENST00000546411 CHAMP1Q96JM3 812 aa18.55■□□□□ 0.56
CUX1-211ENST00000546411 SOS1Q07889 1333 aaPredicted RBP18.55■□□□□ 0.56
CUX1-211ENST00000546411 CCDC82Q8N4S0 544 aa18.55■□□□□ 0.56
CUX1-211ENST00000546411 IL17REQ8NFR9 667 aa18.55■□□□□ 0.56
CUX1-211ENST00000546411 PRR36Q9H6K5 1346 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 BICDL1Q6ZP65 573 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 TMOD3Q9NYL9 352 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 DHX16O60231 1041 aaKnown RBP18.54■□□□□ 0.56
CUX1-211ENST00000546411 KRT32Q14532 448 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 LMBR1LQ6UX01 489 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 CNPY2Q9Y2B0 182 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 RBM8AQ9Y5S9 174 aaKnown RBP18.54■□□□□ 0.56
CUX1-211ENST00000546411 ABCC4O15439 1325 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 SNRPA1P09661 255 aaKnown RBP18.54■□□□□ 0.56
CUX1-211ENST00000546411 FILIP1Q7Z7B0 1213 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 IP6K1Q92551 441 aa18.54■□□□□ 0.56
CUX1-211ENST00000546411 IQGAP3Q86VI3 1631 aa18.53■□□□□ 0.56
CUX1-211ENST00000546411 PRIM1P49642 420 aaKnown RBP18.53■□□□□ 0.56
CUX1-211ENST00000546411 PLEKHG3A1L390 1219 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms