RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 DDR1Q08345 913 aa12.44□□□□□ -0.42
YBX3-218ENST00000546298 PIM2Q9P1W9 311 aa12.44□□□□□ -0.42
YBX3-218ENST00000546298 C10orf71Q711Q0 1435 aa12.44□□□□□ -0.42
YBX3-218ENST00000546298 COL15A1P39059 1388 aa12.43□□□□□ -0.42
YBX3-218ENST00000546298 POLRMTO00411 1230 aaKnown RBP12.43□□□□□ -0.42
YBX3-218ENST00000546298 EIF5P55010 431 aaKnown RBP12.43□□□□□ -0.42
YBX3-218ENST00000546298 RALBP1Q15311 655 aa12.43□□□□□ -0.42
YBX3-218ENST00000546298 PXDNLA1KZ92 1463 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 IL6STP40189 918 aaPredicted RBP12.42□□□□□ -0.42
YBX3-218ENST00000546298 C1QTNF8P60827 252 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 NFIXQ14938 502 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 ARHGAP27Q6ZUM4 889 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 MCM10Q7L590 875 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 KCPQ6ZWJ8 1503 aa12.42□□□□□ -0.42
YBX3-218ENST00000546298 SERPINB2P05120 415 aa12.41□□□□□ -0.42
YBX3-218ENST00000546298 SNRPA1P09661 255 aaKnown RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 TAF7Q15545 349 aaPredicted RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 DALRD3Q5D0E6 543 aaKnown RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 PNISRQ8TF01 805 aaKnown RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 GPBP1L1Q9HC44 474 aaPredicted RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 ZNF330Q9Y3S2 320 aaPredicted RBP12.41□□□□□ -0.42
YBX3-218ENST00000546298 SCN11AQ9UI33 1791 aa12.41□□□□□ -0.42
YBX3-218ENST00000546298 CICQ96RK0 1608 aaPredicted RBP12.4□□□□□ -0.42
YBX3-218ENST00000546298 ATP10DQ9P241 1426 aa12.4□□□□□ -0.42
YBX3-218ENST00000546298 KCNQ3O43525 872 aa12.4□□□□□ -0.42
YBX3-218ENST00000546298 KCNA3P22001 575 aa12.4□□□□□ -0.42
YBX3-218ENST00000546298 BCL2L12Q9HB09 334 aa12.4□□□□□ -0.42
YBX3-218ENST00000546298 A1BGP04217 495 aa12.39□□□□□ -0.43
YBX3-218ENST00000546298 DCTN1Q14203 1278 aa12.39□□□□□ -0.43
YBX3-218ENST00000546298 BICDL1Q6ZP65 573 aa12.39□□□□□ -0.43
YBX3-218ENST00000546298 TBC1D2BQ9UPU7 963 aa12.39□□□□□ -0.43
YBX3-218ENST00000546298 ADAMTS7Q9UKP4 1686 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 MAPK8IP3Q9UPT6 1336 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 COL5A3P25940 1745 aaPredicted RBP12.38□□□□□ -0.43
YBX3-218ENST00000546298 CHRNA5P30532 468 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 DDX10Q13206 875 aaKnown RBP12.38□□□□□ -0.43
YBX3-218ENST00000546298 NFE2L2Q16236 605 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 PDZRN3Q9UPQ7 1066 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 USP16Q9Y5T5 823 aa12.38□□□□□ -0.43
YBX3-218ENST00000546298 MYH14Q7Z406 1995 aaKnown RBP12.38□□□□□ -0.43
YBX3-218ENST00000546298 CHD4Q14839 1912 aa12.37□□□□□ -0.43
YBX3-218ENST00000546298 DZIP3Q86Y13 1208 aaKnown RBP12.37□□□□□ -0.43
YBX3-218ENST00000546298 PLEKHF1Q96S99 279 aa12.37□□□□□ -0.43
YBX3-218ENST00000546298 ADCY9O60503 1353 aa12.37□□□□□ -0.43
YBX3-218ENST00000546298 C4AP0C0L4 1744 aa12.37□□□□□ -0.43
YBX3-218ENST00000546298 TJP1Q07157 1748 aa12.37□□□□□ -0.43
YBX3-218ENST00000546298 SENP3-EIF4A1A0A087X0R7 540 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 H0YIN7 160 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 NPHP1O15259 732 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 TBC1D9BQ66K14 1250 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 CLEC4GQ6UXB4 293 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 ZNF526Q8TF50 670 aaPredicted RBP12.36□□□□□ -0.43
YBX3-218ENST00000546298 SETDB2Q96T68 719 aa12.36□□□□□ -0.43
YBX3-218ENST00000546298 RGL2O15211 777 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 CAMTA2O94983 1202 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 PDE6BP35913 854 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 C2CD5Q86YS7 1000 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 TTLL6Q8N841 843 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 BRIP1Q9BX63 1249 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 ZNF652Q9Y2D9 606 aa12.35□□□□□ -0.43
YBX3-218ENST00000546298 CARMIL3Q8ND23 1372 aa12.34□□□□□ -0.43
YBX3-218ENST00000546298 CACNB1Q02641 598 aaPredicted RBP12.34□□□□□ -0.43
YBX3-218ENST00000546298 C9orf131Q5VYM1 1079 aa12.34□□□□□ -0.43
YBX3-218ENST00000546298 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
YBX3-218ENST00000546298 MYBBP1AQ9BQG0 1328 aaKnown RBP12.34□□□□□ -0.43
YBX3-218ENST00000546298 PRAMEF22A3QJZ6 481 aa12.33□□□□□ -0.44
YBX3-218ENST00000546298 ST5P78524 1137 aa12.33□□□□□ -0.44
YBX3-218ENST00000546298 LMOD3Q0VAK6 560 aa12.33□□□□□ -0.44
YBX3-218ENST00000546298 PRR5LQ6MZQ0 368 aa12.33□□□□□ -0.44
YBX3-218ENST00000546298 CNBD1Q8NA66 436 aa12.33□□□□□ -0.44
YBX3-218ENST00000546298 NBPF26B4DH59 902 aa12.32□□□□□ -0.44
YBX3-218ENST00000546298 PIP4K2AP48426 406 aaPredicted RBP12.32□□□□□ -0.44
YBX3-218ENST00000546298 RIPK4P57078 832 aa12.32□□□□□ -0.44
YBX3-218ENST00000546298 EIF4A1P60842 406 aaKnown RBP12.32□□□□□ -0.44
YBX3-218ENST00000546298 NBPF10Q6P3W6 841 aaKnown RBP12.32□□□□□ -0.44
YBX3-218ENST00000546298 NBPF15Q8N660 670 aa12.32□□□□□ -0.44
YBX3-218ENST00000546298 ZNF622Q969S3 477 aaKnown RBP eCLIP12.32□□□□□ -0.442e-15■□□□□ 9.4
YBX3-218ENST00000546298 WDR43Q15061 677 aaKnown RBP eCLIP12.31□□□□□ -0.44
YBX3-218ENST00000546298 TPTE2Q6XPS3 522 aa12.31□□□□□ -0.44
YBX3-218ENST00000546298 NBPF5PQ86XG9 351 aaPredicted RBP12.31□□□□□ -0.44
YBX3-218ENST00000546298 CNKSR1Q969H4 720 aa12.31□□□□□ -0.44
YBX3-218ENST00000546298 THUMPD2Q9BTF0 503 aaKnown RBP12.31□□□□□ -0.44
YBX3-218ENST00000546298 BABAM1Q9NWV8 329 aa12.31□□□□□ -0.44
YBX3-218ENST00000546298 RNF181Q9P0P0 153 aa12.31□□□□□ -0.44
YBX3-218ENST00000546298 KIF3CO14782 793 aa12.3□□□□□ -0.44
YBX3-218ENST00000546298 UBR2Q8IWV8 1755 aa12.3□□□□□ -0.44
YBX3-218ENST00000546298 KIF13BQ9NQT8 1826 aa12.3□□□□□ -0.44
YBX3-218ENST00000546298 ERVV-1B6SEH8 477 aa12.29□□□□□ -0.44
YBX3-218ENST00000546298 LMNB1P20700 586 aa12.29□□□□□ -0.44
YBX3-218ENST00000546298 TMPOP42166 694 aaKnown RBP12.29□□□□□ -0.44
YBX3-218ENST00000546298 STYK1Q6J9G0 422 aa12.29□□□□□ -0.44
YBX3-218ENST00000546298 TSPYL4Q9UJ04 414 aa12.29□□□□□ -0.44
YBX3-218ENST00000546298 NIP7Q9Y221 180 aaKnown RBP eCLIP12.29□□□□□ -0.44
YBX3-218ENST00000546298 KDM2BQ8NHM5 1336 aa12.29□□□□□ -0.44
YBX3-218ENST00000546298 TOMM70O94826 608 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 GTF2E1P29083 439 aaPredicted RBP12.28□□□□□ -0.44
YBX3-218ENST00000546298 SOGA3Q5TF21 947 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 KIF6Q6ZMV9 814 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 CCDC24Q8N4L8 307 aa12.28□□□□□ -0.44
YBX3-218ENST00000546298 NGEFQ8N5V2 710 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms