RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	CHMP7	Q8WUX9	453 aa	Predicted RBP	9.95	□□□□□ -0.82
LEMD3-205	ENST00000544506	CXXC1	Q9P0U4	656 aa	Predicted RBP	9.95	□□□□□ -0.82
LEMD3-205	ENST00000544506	PARP3	Q9Y6F1	533 aa		9.95	□□□□□ -0.82
LEMD3-205	ENST00000544506	ATP2B4	P23634	1241 aa		9.94	□□□□□ -0.82
LEMD3-205	ENST00000544506	PDE4C	Q08493	712 aa		9.94	□□□□□ -0.82
LEMD3-205	ENST00000544506	WDR44	Q5JSH3	913 aa		9.94	□□□□□ -0.82
LEMD3-205	ENST00000544506	SH3PXD2A	Q5TCZ1	1133 aa		9.94	□□□□□ -0.82
LEMD3-205	ENST00000544506	SENP3-EIF4A1	A0A087X0R7	540 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	FOXO3	O43524	673 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	NOS2	P35228	1153 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	PTS	Q03393	145 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	L3MBTL2	Q969R5	705 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	TIMMDC1	Q9NPL8	285 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	CHMP3	Q9Y3E7	222 aa		9.93	□□□□□ -0.82
LEMD3-205	ENST00000544506	SERTM1	A2A2V5	107 aa		9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	EML1	O00423	815 aa		9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	FKBP5	Q13451	457 aa	Predicted RBP	9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	POTEA	Q6S8J7	498 aa		9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	STAG2	Q8N3U4	1231 aa		9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	C2orf49	Q9BVC5	232 aa	Predicted RBP	9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	ZNF232	Q9UNY5	417 aa		9.92	□□□□□ -0.82
LEMD3-205	ENST00000544506	SSFA2	P28290	1259 aa		9.91	□□□□□ -0.82
LEMD3-205	ENST00000544506	ZNF787	Q6DD87	383 aa		9.91	□□□□□ -0.82
LEMD3-205	ENST00000544506	HOMEZ	Q8IX15	550 aa		9.91	□□□□□ -0.82
LEMD3-205	ENST00000544506	SLC35F4	A4IF30	521 aa		9.9	□□□□□ -0.82
LEMD3-205	ENST00000544506	HIRA	P54198	1017 aa	Predicted RBP	9.9	□□□□□ -0.82
LEMD3-205	ENST00000544506		A0A1B0GTH6	734 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	TXLNA	P40222	546 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	PHLDB3	Q6NSJ2	640 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	AIDA	Q96BJ3	306 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	MKNK1	Q9BUB5	465 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	TRAIP	Q9BWF2	469 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	DYRK1B	Q9Y463	629 aa		9.89	□□□□□ -0.83
LEMD3-205	ENST00000544506	ATP4A	P20648	1035 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	NBPF1	Q3BBV0	1214 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	CCDC155	Q8N6L0	562 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	VTI1A	Q96AJ9	217 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	ZDHHC3	Q9NYG2	299 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	HCN4	Q9Y3Q4	1203 aa		9.88	□□□□□ -0.83
LEMD3-205	ENST00000544506	MSX1	P28360	303 aa		9.87	□□□□□ -0.83
LEMD3-205	ENST00000544506	SCNN1A	P37088	669 aa		9.87	□□□□□ -0.83
LEMD3-205	ENST00000544506	B4GALNT3	Q6L9W6	998 aa		9.87	□□□□□ -0.83
LEMD3-205	ENST00000544506	C1orf216	Q8TAB5	229 aa		9.87	□□□□□ -0.83
LEMD3-205	ENST00000544506	GAS2L1	Q99501	681 aa	Predicted RBP	9.87	□□□□□ -0.83
LEMD3-205	ENST00000544506	PDIA4	P13667	645 aa	Known RBP	9.86	□□□□□ -0.83
LEMD3-205	ENST00000544506	CAPN12	Q6ZSI9	719 aa		9.86	□□□□□ -0.83
LEMD3-205	ENST00000544506	NGLY1	Q96IV0	654 aa		9.86	□□□□□ -0.83
LEMD3-205	ENST00000544506	PHACTR1	Q9C0D0	580 aa		9.86	□□□□□ -0.83
LEMD3-205	ENST00000544506	GPAM	Q9HCL2	828 aa		9.86	□□□□□ -0.83
LEMD3-205	ENST00000544506	TAT	P17735	454 aa	Predicted RBP	9.85	□□□□□ -0.83
LEMD3-205	ENST00000544506	ALDH16A1	Q8IZ83	802 aa		9.85	□□□□□ -0.83
LEMD3-205	ENST00000544506	F11	P03951	625 aa		9.84	□□□□□ -0.83
LEMD3-205	ENST00000544506	COL26A1	Q96A83	441 aa		9.84	□□□□□ -0.83
LEMD3-205	ENST00000544506	QTRT2	Q9H974	415 aa	Known RBP	9.84	□□□□□ -0.83
LEMD3-205	ENST00000544506	PTCD1	O75127	700 aa	Known RBP	9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	PPFIA3	O75145	1194 aa		9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	BRD1	O95696	1058 aa		9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	C1orf53	Q5VUE5	145 aa		9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	RIPOR1	Q6ZS17	1223 aa		9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	RUBCNL	Q9H714	662 aa		9.83	□□□□□ -0.84
LEMD3-205	ENST00000544506	ITGA6	P23229	1130 aa		9.82	□□□□□ -0.84
LEMD3-205	ENST00000544506	RHPN1	Q8TCX5	695 aa		9.82	□□□□□ -0.84
LEMD3-205	ENST00000544506	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.82	□□□□□ -0.84
LEMD3-205	ENST00000544506	SEPT3	Q9UH03	358 aa		9.82	□□□□□ -0.84
LEMD3-205	ENST00000544506	NAA30	Q147X3	362 aa	Predicted RBP	9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	RTN1	Q16799	776 aa		9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	BICDL1	Q6ZP65	573 aa		9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	KLRG1	Q96E93	195 aa		9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	CRISPLD1	Q9H336	500 aa		9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	NXF1	Q9UBU9	619 aa	Known RBP	9.81	□□□□□ -0.84
LEMD3-205	ENST00000544506	VEGFB	P49765	207 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	ARSJ	Q5FYB0	599 aa	Predicted RBP	9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	PGBD3	Q8N328	593 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	C7orf43	Q8WVR3	580 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	MYO19	Q96H55	970 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	ZIC5	Q96T25	663 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	SAP130	Q9H0E3	1048 aa		9.8	□□□□□ -0.84
LEMD3-205	ENST00000544506	THBS1	P07996	1170 aa		9.79	□□□□□ -0.84
LEMD3-205	ENST00000544506	GPC6	Q9Y625	555 aa	Predicted RBP	9.79	□□□□□ -0.84
LEMD3-205	ENST00000544506		A0A1W2PNR3	127 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	DBN1	Q16643	649 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	COX20	Q5RI15	118 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	C16orf46	Q6P387	395 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	TRIM22	Q8IYM9	498 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	ZNF837	Q96EG3	531 aa	Predicted RBP	9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	NUCKS1	Q9H1E3	243 aa	Known RBP	9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506	LRFN2	Q9ULH4	789 aa		9.78	□□□□□ -0.84
LEMD3-205	ENST00000544506		H7C1W4	665 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	ARID4A	P29374	1257 aa	Predicted RBP	9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	DGKZ	Q13574	1117 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	TXNDC2	Q86VQ3	553 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	HSH2D	Q96JZ2	352 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	KLK14	Q9P0G3	267 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	MTMR7	Q9Y216	660 aa		9.77	□□□□□ -0.85
LEMD3-205	ENST00000544506	CDC14C	A4D256	554 aa		9.76	□□□□□ -0.85
LEMD3-205	ENST00000544506		H3BM21	787 aa		9.76	□□□□□ -0.85
LEMD3-205	ENST00000544506	LBR	Q14739	615 aa	Known RBP	9.76	□□□□□ -0.85
LEMD3-205	ENST00000544506	EFHC2	Q5JST6	749 aa		9.76	□□□□□ -0.85
LEMD3-205	ENST00000544506	LRRC69	Q6ZNQ3	347 aa		9.76	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms