RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 ZBTB7AO95365 584 aa25.07■■□□□ 1.6
DDX55-211ENST00000544429 ADRA2BP18089 450 aa25.07■■□□□ 1.6
DDX55-211ENST00000544429 PTGER2P43116 358 aa25.07■■□□□ 1.6
DDX55-211ENST00000544429 SPON1Q9HCB6 807 aa25.07■■□□□ 1.6
DDX55-211ENST00000544429 RTCBQ9Y3I0 505 aaKnown RBP25.07■■□□□ 1.6
DDX55-211ENST00000544429 SNRPA1P09661 255 aaKnown RBP25.06■■□□□ 1.6
DDX55-211ENST00000544429 ZNF853P0CG23 659 aa25.06■■□□□ 1.6
DDX55-211ENST00000544429 STARD3NLO95772 234 aa25.05■■□□□ 1.6
DDX55-211ENST00000544429 TSPYL4Q9UJ04 414 aa25.05■■□□□ 1.6
DDX55-211ENST00000544429 SOS1Q07889 1333 aaPredicted RBP25.05■■□□□ 1.6
DDX55-211ENST00000544429 PRAMEF22A3QJZ6 481 aa25.04■■□□□ 1.6
DDX55-211ENST00000544429 GIGYF1O75420 1035 aaPredicted RBP25.04■■□□□ 1.6
DDX55-211ENST00000544429 MIER1Q8N108 512 aa25.04■■□□□ 1.6
DDX55-211ENST00000544429 ZBTB1Q9Y2K1 713 aa25.04■■□□□ 1.6
DDX55-211ENST00000544429 USP16Q9Y5T5 823 aa25.04■■□□□ 1.6
DDX55-211ENST00000544429 PHF14O94880 888 aa25.03■■□□□ 1.6
DDX55-211ENST00000544429 CFAP44Q96MT7 982 aa25.03■■□□□ 1.6
DDX55-211ENST00000544429 TRAPPC3LQ5T215 181 aa25.02■■□□□ 1.6
DDX55-211ENST00000544429 WWC1Q8IX03 1113 aa25.02■■□□□ 1.6
DDX55-211ENST00000544429 ARHGEF1Q92888 912 aaKnown RBP25.02■■□□□ 1.6
DDX55-211ENST00000544429 CALD1Q05682 793 aaKnown RBP25.01■■□□□ 1.59
DDX55-211ENST00000544429 ATF5Q9Y2D1 282 aaPredicted RBP25.01■■□□□ 1.59
DDX55-211ENST00000544429 EIF5P55010 431 aaKnown RBP25■■□□□ 1.59
DDX55-211ENST00000544429 NGEFQ8N5V2 710 aa25■■□□□ 1.59
DDX55-211ENST00000544429 IFT57Q9NWB7 429 aa25■■□□□ 1.59
DDX55-211ENST00000544429 COL15A1P39059 1388 aa24.98■■□□□ 1.59
DDX55-211ENST00000544429 A1BGP04217 495 aa24.98■■□□□ 1.59
DDX55-211ENST00000544429 MSH5O43196 834 aa24.97■■□□□ 1.59
DDX55-211ENST00000544429 IL6STP40189 918 aaPredicted RBP24.97■■□□□ 1.59
DDX55-211ENST00000544429 MBIPQ9NS73 344 aa24.97■■□□□ 1.59
DDX55-211ENST00000544429 IL16Q14005 1332 aa24.96■■□□□ 1.59
DDX55-211ENST00000544429 USP42Q9H9J4 1324 aaKnown RBP24.96■■□□□ 1.59
DDX55-211ENST00000544429 SENP3-EIF4A1A0A087X0R7 540 aa24.96■■□□□ 1.59
DDX55-211ENST00000544429 GNAI1P63096 354 aa24.96■■□□□ 1.59
DDX55-211ENST00000544429 GYS1P13807 737 aa24.95■■□□□ 1.58
DDX55-211ENST00000544429 CANXP27824 592 aaKnown RBP24.95■■□□□ 1.58
DDX55-211ENST00000544429 RFC4P35249 363 aa24.95■■□□□ 1.58
DDX55-211ENST00000544429 NBPF26B4DH59 902 aa24.94■■□□□ 1.58
DDX55-211ENST00000544429 NBPF10Q6P3W6 841 aaKnown RBP24.94■■□□□ 1.58
DDX55-211ENST00000544429 NBPF15Q8N660 670 aa24.94■■□□□ 1.58
DDX55-211ENST00000544429 LAS1LQ9Y4W2 734 aaKnown RBP24.94■■□□□ 1.58
DDX55-211ENST00000544429 SCN7AQ01118 1682 aa24.94■■□□□ 1.58
DDX55-211ENST00000544429 ZNF521Q96K83 1311 aa24.93■■□□□ 1.58
DDX55-211ENST00000544429 KRT24Q2M2I5 525 aa24.93■■□□□ 1.58
DDX55-211ENST00000544429 WDR63Q8IWG1 891 aa24.93■■□□□ 1.58
DDX55-211ENST00000544429 BCORQ6W2J9 1755 aa24.93■■□□□ 1.58
DDX55-211ENST00000544429 MSL1Q68DK7 614 aa24.92■■□□□ 1.58
DDX55-211ENST00000544429 NARFQ9UHQ1 456 aa24.92■■□□□ 1.58
DDX55-211ENST00000544429 HOXB7P09629 217 aa24.91■■□□□ 1.58
DDX55-211ENST00000544429 SRP68Q9UHB9 627 aaKnown RBP24.91■■□□□ 1.58
DDX55-211ENST00000544429 ERBB4Q15303 1308 aa24.9■■□□□ 1.58
DDX55-211ENST00000544429 NLGN1Q8N2Q7 840 aa24.9■■□□□ 1.58
DDX55-211ENST00000544429 POLD1P28340 1107 aa24.89■■□□□ 1.58
DDX55-211ENST00000544429 PIP4K2AP48426 406 aaPredicted RBP24.89■■□□□ 1.58
DDX55-211ENST00000544429 ARXQ96QS3 562 aa24.89■■□□□ 1.58
DDX55-211ENST00000544429 BCL2L12Q9HB09 334 aa24.89■■□□□ 1.58
DDX55-211ENST00000544429 A0A087WZG4 1122 aa24.88■■□□□ 1.57
DDX55-211ENST00000544429 LRP10Q7Z4F1 713 aa24.88■■□□□ 1.57
DDX55-211ENST00000544429 FKBP8Q14318 412 aa24.87■■□□□ 1.57
DDX55-211ENST00000544429 PDIA6Q15084 440 aa24.87■■□□□ 1.57
DDX55-211ENST00000544429 SALL2Q9Y467 1007 aaPredicted RBP24.87■■□□□ 1.57
DDX55-211ENST00000544429 ZPR1O75312 459 aa24.86■■□□□ 1.57
DDX55-211ENST00000544429 USPL1Q5W0Q7 1092 aa24.86■■□□□ 1.57
DDX55-211ENST00000544429 KIF13BQ9NQT8 1826 aa24.85■■□□□ 1.57
DDX55-211ENST00000544429 DUSP27Q5VZP5 1158 aa24.85■■□□□ 1.57
DDX55-211ENST00000544429 SPINK5Q9NQ38 1064 aaPredicted RBP24.85■■□□□ 1.57
DDX55-211ENST00000544429 RGL2O15211 777 aa24.84■■□□□ 1.57
DDX55-211ENST00000544429 CAMTA2O94983 1202 aa24.84■■□□□ 1.57
DDX55-211ENST00000544429 TM4SF1P30408 202 aa24.84■■□□□ 1.57
DDX55-211ENST00000544429 C8orf58Q8NAV2 365 aa24.84■■□□□ 1.57
DDX55-211ENST00000544429 TSR2Q969E8 191 aaKnown RBP24.84■■□□□ 1.57
DDX55-211ENST00000544429 PPP1R1BQ9UD71 204 aaPredicted RBP24.84■■□□□ 1.57
DDX55-211ENST00000544429 NRXN2Q9P2S2 1712 aa24.83■■□□□ 1.57
DDX55-211ENST00000544429 MMP10P09238 476 aa24.83■■□□□ 1.57
DDX55-211ENST00000544429 TBC1D2BQ9UPU7 963 aa24.83■■□□□ 1.57
DDX55-211ENST00000544429 FANCIQ9NVI1 1328 aa24.83■■□□□ 1.56
DDX55-211ENST00000544429 EIF2S2P20042 333 aaKnown RBP24.82■■□□□ 1.56
DDX55-211ENST00000544429 DZIP3Q86Y13 1208 aaKnown RBP24.82■■□□□ 1.56
DDX55-211ENST00000544429 FHDC1Q9C0D6 1143 aaPredicted RBP24.82■■□□□ 1.56
DDX55-211ENST00000544429 PROSER3Q2NL68 480 aa24.81■■□□□ 1.56
DDX55-211ENST00000544429 ZNF330Q9Y3S2 320 aaPredicted RBP24.81■■□□□ 1.56
DDX55-211ENST00000544429 AFDNP55196 1824 aaKnown RBP24.81■■□□□ 1.56
DDX55-211ENST00000544429 NUP98P52948 1817 aa24.8■■□□□ 1.56
DDX55-211ENST00000544429 DDR1Q08345 913 aa24.8■■□□□ 1.56
DDX55-211ENST00000544429 TSPYL6Q8N831 410 aa24.8■■□□□ 1.56
DDX55-211ENST00000544429 NFIXQ14938 502 aa24.79■■□□□ 1.56
DDX55-211ENST00000544429 HDGFL1Q5TGJ6 251 aa24.79■■□□□ 1.56
DDX55-211ENST00000544429 SYT17Q9BSW7 474 aa24.79■■□□□ 1.56
DDX55-211ENST00000544429 DDX21Q9NR30 783 aaKnown RBP eCLIP24.79■■□□□ 1.56
DDX55-211ENST00000544429 POLRMTO00411 1230 aaKnown RBP24.78■■□□□ 1.56
DDX55-211ENST00000544429 CLEC4GQ6UXB4 293 aa24.78■■□□□ 1.56
DDX55-211ENST00000544429 NPM2Q86SE8 214 aaKnown RBP24.78■■□□□ 1.56
DDX55-211ENST00000544429 KIAA1551Q9HCM1 1747 aa24.78■■□□□ 1.56
DDX55-211ENST00000544429 MYL6BP14649 208 aa24.77■■□□□ 1.56
DDX55-211ENST00000544429 CHPF2Q9P2E5 772 aa24.77■■□□□ 1.56
DDX55-211ENST00000544429 C10orf71Q711Q0 1435 aa24.77■■□□□ 1.56
DDX55-211ENST00000544429 ERVV-1B6SEH8 477 aa24.76■■□□□ 1.55
DDX55-211ENST00000544429 TTLL7Q6ZT98 887 aa24.76■■□□□ 1.55
DDX55-211ENST00000544429 NECTIN2Q92692 538 aa24.76■■□□□ 1.55
DDX55-211ENST00000544429 DBF4Q9UBU7 674 aaPredicted RBP24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 176.4 ms