RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 F6X3S4 739 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 ZNF496Q96IT1 587 aaPredicted RBP11.74□□□□□ -0.53
GNE-206ENST00000543356 PHAXQ9H814 394 aaKnown RBP11.74□□□□□ -0.53
GNE-206ENST00000543356 PRAMEF22A3QJZ6 481 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 SNRPA1P09661 255 aaKnown RBP11.74□□□□□ -0.53
GNE-206ENST00000543356 SMC5Q8IY18 1101 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 HYPKQ9NX55 129 aa11.74□□□□□ -0.53
GNE-206ENST00000543356 SLC4A10Q6U841 1118 aa11.73□□□□□ -0.53
GNE-206ENST00000543356 DDX21Q9NR30 783 aaKnown RBP eCLIP11.73□□□□□ -0.53
GNE-206ENST00000543356 DOT1LQ8TEK3 1739 aa11.73□□□□□ -0.53
GNE-206ENST00000543356 SKAP1Q86WV1 359 aa11.73□□□□□ -0.53
GNE-206ENST00000543356 C1orf115Q9H7X2 142 aa11.73□□□□□ -0.53
GNE-206ENST00000543356 ADCY9O60503 1353 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 BARGINQ6ZT62 677 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 EXOC5O00471 708 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 PDIA6Q15084 440 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 MEIS3Q99687 375 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 PDZRN3Q9UPQ7 1066 aa11.72□□□□□ -0.53
GNE-206ENST00000543356 BCL9LQ86UU0 1499 aa11.71□□□□□ -0.53
GNE-206ENST00000543356 ERBB4Q15303 1308 aa11.71□□□□□ -0.53
GNE-206ENST00000543356 UNC5CLQ8IV45 518 aa11.71□□□□□ -0.53
GNE-206ENST00000543356 RPAP2Q8IXW5 612 aaPredicted RBP11.71□□□□□ -0.53
GNE-206ENST00000543356 GCC1Q96CN9 775 aa11.71□□□□□ -0.53
GNE-206ENST00000543356 TMOD3Q9NYL9 352 aa11.71□□□□□ -0.53
GNE-206ENST00000543356 IBTKQ9P2D0 1353 aaPredicted RBP11.71□□□□□ -0.54
GNE-206ENST00000543356 PROSER3Q2NL68 480 aa11.71□□□□□ -0.54
GNE-206ENST00000543356 SIRT2Q8IXJ6 389 aa11.71□□□□□ -0.54
GNE-206ENST00000543356 ANKRD44Q8N8A2 993 aa11.71□□□□□ -0.54
GNE-206ENST00000543356 DNAAF4Q8WXU2 420 aa11.71□□□□□ -0.54
GNE-206ENST00000543356 BCL9O00512 1426 aa11.7□□□□□ -0.54
GNE-206ENST00000543356 GNAI3P08754 354 aa11.7□□□□□ -0.54
GNE-206ENST00000543356 ANXA1P04083 346 aa11.7□□□□□ -0.54
GNE-206ENST00000543356 CEP85Q6P2H3 762 aa11.7□□□□□ -0.54
GNE-206ENST00000543356 FNBP4Q8N3X1 1017 aaPredicted RBP11.7□□□□□ -0.54
GNE-206ENST00000543356 PI4KAP2A4QPH2 592 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 DDX58O95786 925 aaKnown RBP11.69□□□□□ -0.54
GNE-206ENST00000543356 VPS72Q15906 364 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 KSR2Q6VAB6 950 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 PI4KAP1Q8N8J0 262 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 SRCIN1Q9C0H9 1055 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 ARFGEF2Q9Y6D5 1785 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 GNAI2P04899 355 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 RGS3P49796 1198 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 DDB1Q16531 1140 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 BEND3Q5T5X7 828 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 LRP10Q7Z4F1 713 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 USP16Q9Y5T5 823 aa11.69□□□□□ -0.54
GNE-206ENST00000543356 NUCB1Q02818 461 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 IL27Q8NEV9 243 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 C8orf37Q96NL8 207 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 THSD7AQ9UPZ6 1657 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 CICQ96RK0 1608 aaPredicted RBP11.68□□□□□ -0.54
GNE-206ENST00000543356 PIGBQ92521 554 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 NGLY1Q96IV0 654 aa11.68□□□□□ -0.54
GNE-206ENST00000543356 NUP188Q5SRE5 1749 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 ALDH1L1O75891 902 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 VSIG10Q8N0Z9 540 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 MAP3K2Q9Y2U5 619 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 PDE4AP27815 886 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 BACH2Q9BYV9 841 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 USP44Q9H0E7 712 aa11.67□□□□□ -0.54
GNE-206ENST00000543356 TJP1Q07157 1748 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 HMMRO75330 724 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 HSPA1LP34931 641 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 DCTPP1Q9H773 170 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 PODXL2Q9NZ53 605 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 CCDC9Q9Y3X0 531 aaKnown RBP11.66□□□□□ -0.54
GNE-206ENST00000543356 UBTFL1P0CB47 393 aaPredicted RBP11.66□□□□□ -0.54
GNE-206ENST00000543356 CHD1LQ86WJ1 897 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 ATG3Q9NT62 314 aa11.66□□□□□ -0.54
GNE-206ENST00000543356 MYL6BP14649 208 aa11.65□□□□□ -0.54
GNE-206ENST00000543356 FAM161AQ3B820 660 aa11.65□□□□□ -0.54
GNE-206ENST00000543356 XAGE3Q8WTP9 111 aa11.65□□□□□ -0.54
GNE-206ENST00000543356 TEX13AQ9BXU3 409 aaPredicted RBP11.65□□□□□ -0.54
GNE-206ENST00000543356 LINS1Q8NG48 757 aa11.65□□□□□ -0.55
GNE-206ENST00000543356 AFDNP55196 1824 aaKnown RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 PTCD1O75127 700 aaKnown RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 COPS6Q7L5N1 327 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 MARCH10Q8NA82 808 aaPredicted RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 ASAP1Q9ULH1 1129 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 NBPF26B4DH59 902 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 AIMP1Q12904 312 aaKnown RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 NBPF14Q5TI25 921 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 NBPF10Q6P3W6 841 aaKnown RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 NBPF15Q8N660 670 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 USP21Q9UK80 565 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 LRRFIP2Q9Y608 721 aaKnown RBP11.64□□□□□ -0.55
GNE-206ENST00000543356 UTYO14607 1347 aa11.64□□□□□ -0.55
GNE-206ENST00000543356 ZNF831Q5JPB2 1677 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 ATP8B2P98198 1209 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 C8orf34Q49A92 452 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 RIC3Q7Z5B4 369 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 METTL22Q9BUU2 404 aaPredicted RBP11.63□□□□□ -0.55
GNE-206ENST00000543356 RREB1Q92766 1687 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 ANKRD45Q5TZF3 282 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 KLHL34Q8N239 644 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 HDAC5Q9UQL6 1122 aa11.63□□□□□ -0.55
GNE-206ENST00000543356 NEXNQ0ZGT2 675 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms