RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 RNMTO43148 476 aaKnown RBP18.08■□□□□ 0.48
DDX55-209ENST00000542286 DNAAF4Q8WXU2 420 aa18.08■□□□□ 0.48
DDX55-209ENST00000542286 PA2G4Q9UQ80 394 aaKnown RBP18.08■□□□□ 0.48
DDX55-209ENST00000542286 PLEKHO1Q53GL0 409 aaPredicted RBP18.08■□□□□ 0.48
DDX55-209ENST00000542286 C1orf141Q5JVX7 400 aa18.08■□□□□ 0.48
DDX55-209ENST00000542286 BEND3Q5T5X7 828 aa18.08■□□□□ 0.48
DDX55-209ENST00000542286 NPHP4O75161 1426 aaPredicted RBP18.07■□□□□ 0.48
DDX55-209ENST00000542286 CHRNA2Q15822 529 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 AKAP4Q5JQC9 854 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 UPF3BQ9BZI7 483 aaKnown RBP18.07■□□□□ 0.48
DDX55-209ENST00000542286 OSBPL3Q9H4L5 887 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 NEK4P51957 841 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 JARID2Q92833 1246 aaPredicted RBP18.07■□□□□ 0.48
DDX55-209ENST00000542286 ESYT1Q9BSJ8 1104 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 MAP3K2Q9Y2U5 619 aa18.07■□□□□ 0.48
DDX55-209ENST00000542286 ESPNB1AK53 854 aa18.06■□□□□ 0.48
DDX55-209ENST00000542286 GAS2L3Q86XJ1 694 aa18.06■□□□□ 0.48
DDX55-209ENST00000542286 ADCY9O60503 1353 aa18.06■□□□□ 0.48
DDX55-209ENST00000542286 CHMLP26374 656 aa18.06■□□□□ 0.48
DDX55-209ENST00000542286 LARP6Q9BRS8 491 aaKnown RBP18.06■□□□□ 0.48
DDX55-209ENST00000542286 REC8O95072 547 aa18.05■□□□□ 0.48
DDX55-209ENST00000542286 NLRP2Q9NX02 1062 aa18.05■□□□□ 0.48
DDX55-209ENST00000542286 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.05■□□□□ 0.48
DDX55-209ENST00000542286 DDX11L8A8MPP1 907 aa18.05■□□□□ 0.48
DDX55-209ENST00000542286 SSH3Q8TE77 659 aa18.05■□□□□ 0.48
DDX55-209ENST00000542286 FOXD4L6Q3SYB3 417 aaPredicted RBP18.04■□□□□ 0.48
DDX55-209ENST00000542286 FOXD4L3Q6VB84 417 aaPredicted RBP18.04■□□□□ 0.48
DDX55-209ENST00000542286 RHPN1Q8TCX5 695 aa18.04■□□□□ 0.48
DDX55-209ENST00000542286 GRPEL1Q9HAV7 217 aa18.04■□□□□ 0.48
DDX55-209ENST00000542286 MYL6BP14649 208 aa18.04■□□□□ 0.48
DDX55-209ENST00000542286 MCTP1Q6DN14 999 aa18.03■□□□□ 0.48
DDX55-209ENST00000542286 ERBB4Q15303 1308 aa18.03■□□□□ 0.48
DDX55-209ENST00000542286 GIGYF1O75420 1035 aaPredicted RBP18.03■□□□□ 0.48
DDX55-209ENST00000542286 GBP4Q96PP9 640 aa18.03■□□□□ 0.48
DDX55-209ENST00000542286 CIZ1Q9ULV3 898 aaPredicted RBP18.03■□□□□ 0.48
DDX55-209ENST00000542286 BAG4O95429 457 aaKnown RBP18.02■□□□□ 0.48
DDX55-209ENST00000542286 OS9Q13438 667 aaPredicted RBP18.02■□□□□ 0.48
DDX55-209ENST00000542286 RGPD5Q99666 1765 aa18.02■□□□□ 0.47
DDX55-209ENST00000542286 KLHDC4Q8TBB5 520 aa18.02■□□□□ 0.47
DDX55-209ENST00000542286 C9orf78Q9NZ63 289 aaPredicted RBP18.01■□□□□ 0.47
DDX55-209ENST00000542286 ST18O60284 1047 aa18.01■□□□□ 0.47
DDX55-209ENST00000542286 NCLP19338 710 aaKnown RBP18.01■□□□□ 0.47
DDX55-209ENST00000542286 ZDHHC9Q9Y397 364 aa18.01■□□□□ 0.47
DDX55-209ENST00000542286 POLA2Q14181 598 aa18■□□□□ 0.47
DDX55-209ENST00000542286 NFATC2IPQ8NCF5 419 aa18■□□□□ 0.47
DDX55-209ENST00000542286 PI4K2BQ8TCG2 481 aa18■□□□□ 0.47
DDX55-209ENST00000542286 DDX54Q8TDD1 881 aaKnown RBP18■□□□□ 0.47
DDX55-209ENST00000542286 BABAM1Q9NWV8 329 aa18■□□□□ 0.47
DDX55-209ENST00000542286 DBF4Q9UBU7 674 aaPredicted RBP18■□□□□ 0.47
DDX55-209ENST00000542286 USP54Q70EL1 1684 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 SIL1Q9H173 461 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 SPG7Q9UQ90 795 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 CSB-PGBD3P0DP91 1061 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 CPA1P15085 419 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 HSPA2P54652 639 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 TPRNQ4KMQ1 711 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 CWC27Q6UX04 472 aaKnown RBP17.99■□□□□ 0.47
DDX55-209ENST00000542286 TRIM44Q96DX7 344 aaPredicted RBP17.99■□□□□ 0.47
DDX55-209ENST00000542286 TMX3Q96JJ7 454 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 ERBB3P21860 1342 aa17.99■□□□□ 0.47
DDX55-209ENST00000542286 STAP2Q9UGK3 403 aa17.98■□□□□ 0.47
DDX55-209ENST00000542286 MED1Q15648 1581 aaPredicted RBP17.98■□□□□ 0.47
DDX55-209ENST00000542286 AMOTQ4VCS5 1084 aa17.98■□□□□ 0.47
DDX55-209ENST00000542286 DDX49Q9Y6V7 483 aaKnown RBP17.97■□□□□ 0.47
DDX55-209ENST00000542286 CACNA1FO60840 1977 aa17.97■□□□□ 0.47
DDX55-209ENST00000542286 C1orf167Q5SNV9 1468 aa17.97■□□□□ 0.47
DDX55-209ENST00000542286 KDM3BQ7LBC6 1761 aa17.97■□□□□ 0.47
DDX55-209ENST00000542286 SUCLG2Q96I99 432 aa17.96■□□□□ 0.47
DDX55-209ENST00000542286 KAZALD1Q96I82 304 aa17.96■□□□□ 0.47
DDX55-209ENST00000542286 C19orf44Q9H6X5 657 aa17.96■□□□□ 0.46
DDX55-209ENST00000542286 ISY1Q9ULR0 285 aaKnown RBP17.96■□□□□ 0.46
DDX55-209ENST00000542286 PDIA6Q15084 440 aa17.95■□□□□ 0.46
DDX55-209ENST00000542286 KSR2Q6VAB6 950 aa17.95■□□□□ 0.46
DDX55-209ENST00000542286 RAPGEF4Q8WZA2 1011 aa17.95■□□□□ 0.46
DDX55-209ENST00000542286 KIF1BPQ96EK5 621 aa17.95■□□□□ 0.46
DDX55-209ENST00000542286 RBM27Q9P2N5 1060 aaKnown RBP17.95■□□□□ 0.46
DDX55-209ENST00000542286 PRPF40AO75400 957 aaKnown RBP17.95■□□□□ 0.46
DDX55-209ENST00000542286 BICC1Q9H694 974 aaKnown RBP17.95■□□□□ 0.46
DDX55-209ENST00000542286 PXDNLA1KZ92 1463 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 TUBGCP6Q96RT7 1819 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 TPM2P07951 284 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 RASEFQ8IZ41 740 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 ZNF496Q96IT1 587 aaPredicted RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 CCDC8Q9H0W5 538 aaPredicted RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 TLR7Q9NYK1 1049 aaKnown RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 USP16Q9Y5T5 823 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 ZNF142P52746 1687 aaPredicted RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 CYP2E1P05181 493 aaPredicted RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 ATF3P18847 181 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 NSFL1CQ9UNZ2 370 aaKnown RBP17.94■□□□□ 0.46
DDX55-209ENST00000542286 TMEM94Q12767 1356 aa17.94■□□□□ 0.46
DDX55-209ENST00000542286 ADAMTSL3P82987 1691 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 COL9A3Q14050 684 aaPredicted RBP17.93■□□□□ 0.46
DDX55-209ENST00000542286 CAVIN1Q6NZI2 390 aaKnown RBP17.93■□□□□ 0.46
DDX55-209ENST00000542286 ZNF790Q6PG37 636 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 LMO7Q8WWI1 1683 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 IGKV5-2P06315 115 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 HOXB7P09629 217 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 PDCL3Q9H2J4 239 aa17.93■□□□□ 0.46
DDX55-209ENST00000542286 EPHA10Q5JZY3 1008 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms