RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 SLC39A6Q13433 755 aa20.91■□□□□ 0.94
RTN3-211ENST00000542238 RBM46Q8TBY0 533 aaKnown RBP20.91■□□□□ 0.94
RTN3-211ENST00000542238 NARFQ9UHQ1 456 aa20.91■□□□□ 0.94
RTN3-211ENST00000542238 AFDNP55196 1824 aaKnown RBP20.9■□□□□ 0.94
RTN3-211ENST00000542238 COL15A1P39059 1388 aa20.89■□□□□ 0.93
RTN3-211ENST00000542238 VSIG10Q8N0Z9 540 aa20.89■□□□□ 0.93
RTN3-211ENST00000542238 DIAPH1O60610 1272 aaKnown RBP20.88■□□□□ 0.93
RTN3-211ENST00000542238 MTHFSDQ2M296 383 aaKnown RBP20.88■□□□□ 0.93
RTN3-211ENST00000542238 KCPQ6ZWJ8 1503 aa20.88■□□□□ 0.93
RTN3-211ENST00000542238 WDR90Q96KV7 1748 aa20.87■□□□□ 0.93
RTN3-211ENST00000542238 KIF7Q2M1P5 1343 aa20.87■□□□□ 0.93
RTN3-211ENST00000542238 NFIXQ14938 502 aa20.87■□□□□ 0.93
RTN3-211ENST00000542238 ZBTB1Q9Y2K1 713 aa20.87■□□□□ 0.93
RTN3-211ENST00000542238 TNRC6CQ9HCJ0 1690 aaKnown RBP20.86■□□□□ 0.93
RTN3-211ENST00000542238 FSTL1Q12841 308 aa20.86■□□□□ 0.93
RTN3-211ENST00000542238 TTC5Q8N0Z6 440 aa20.86■□□□□ 0.93
RTN3-211ENST00000542238 DNAJC5GQ8N7S2 189 aa20.86■□□□□ 0.93
RTN3-211ENST00000542238 NRXN2Q9P2S2 1712 aa20.86■□□□□ 0.93
RTN3-211ENST00000542238 UBR2Q8IWV8 1755 aa20.85■□□□□ 0.93
RTN3-211ENST00000542238 SERPINB2P05120 415 aa20.85■□□□□ 0.93
RTN3-211ENST00000542238 RRAGCQ9HB90 399 aa20.85■□□□□ 0.93
RTN3-211ENST00000542238 DLEC1Q9Y238 1755 aa20.85■□□□□ 0.93
RTN3-211ENST00000542238 STARD3NLO95772 234 aa20.84■□□□□ 0.93
RTN3-211ENST00000542238 CANXP27824 592 aaKnown RBP20.84■□□□□ 0.93
RTN3-211ENST00000542238 CC2D1BQ5T0F9 858 aaKnown RBP20.84■□□□□ 0.93
RTN3-211ENST00000542238 ZC3H4Q9UPT8 1303 aaKnown RBP20.83■□□□□ 0.93
RTN3-211ENST00000542238 A0A087WZG4 1122 aa20.83■□□□□ 0.93
RTN3-211ENST00000542238 PER1O15534 1290 aaPredicted RBP20.82■□□□□ 0.92
RTN3-211ENST00000542238 TTLL6Q8N841 843 aa20.82■□□□□ 0.92
RTN3-211ENST00000542238 BCL2L12Q9HB09 334 aa20.82■□□□□ 0.92
RTN3-211ENST00000542238 H0YIN7 160 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 LMNB1P20700 586 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 RASSF7Q02833 373 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 TEFQ10587 303 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 C2CD5Q86YS7 1000 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 CCDC88AQ3V6T2 1871 aa20.81■□□□□ 0.92
RTN3-211ENST00000542238 BICDL1Q6ZP65 573 aa20.8■□□□□ 0.92
RTN3-211ENST00000542238 TEX13AQ9BXU3 409 aaPredicted RBP20.8■□□□□ 0.92
RTN3-211ENST00000542238 U2SURPO15042 1029 aaKnown RBP20.79■□□□□ 0.92
RTN3-211ENST00000542238 EIF5P55010 431 aaKnown RBP20.79■□□□□ 0.92
RTN3-211ENST00000542238 SMC1BQ8NDV3 1235 aa20.79■□□□□ 0.92
RTN3-211ENST00000542238 GNAT3A8MTJ3 354 aa20.78■□□□□ 0.92
RTN3-211ENST00000542238 GAS2L2Q8NHY3 880 aa20.78■□□□□ 0.92
RTN3-211ENST00000542238 KLRG1Q96E93 195 aa20.78■□□□□ 0.92
RTN3-211ENST00000542238 ZNF790Q6PG37 636 aa20.77■□□□□ 0.92
RTN3-211ENST00000542238 NPM2Q86SE8 214 aaKnown RBP20.77■□□□□ 0.92
RTN3-211ENST00000542238 ZNF496Q96IT1 587 aaPredicted RBP20.77■□□□□ 0.92
RTN3-211ENST00000542238 PDZRN3Q9UPQ7 1066 aa20.77■□□□□ 0.92
RTN3-211ENST00000542238 HEG1Q9ULI3 1381 aa20.76■□□□□ 0.91
RTN3-211ENST00000542238 GLTPD2A6NH11 291 aa20.76■□□□□ 0.91
RTN3-211ENST00000542238 VEGFAP15692 232 aaPredicted RBP20.76■□□□□ 0.91
RTN3-211ENST00000542238 HTRA3P83110 453 aa20.76■□□□□ 0.91
RTN3-211ENST00000542238 ZNF330Q9Y3S2 320 aaPredicted RBP20.76■□□□□ 0.91
RTN3-211ENST00000542238 TIAM2Q8IVF5 1701 aa20.75■□□□□ 0.91
RTN3-211ENST00000542238 CARMIL3Q8ND23 1372 aa20.75■□□□□ 0.91
RTN3-211ENST00000542238 SIPA1L3O60292 1781 aaPredicted RBP20.75■□□□□ 0.91
RTN3-211ENST00000542238 PDE6BP35913 854 aa20.75■□□□□ 0.91
RTN3-211ENST00000542238 CNGB1Q14028 1251 aaPredicted RBP20.75■□□□□ 0.91
RTN3-211ENST00000542238 IL17REQ8NFR9 667 aa20.75■□□□□ 0.91
RTN3-211ENST00000542238 NPC1L1Q9UHC9 1359 aa20.74■□□□□ 0.91
RTN3-211ENST00000542238 SCN7AQ01118 1682 aa20.74■□□□□ 0.91
RTN3-211ENST00000542238 TBC1D9BQ66K14 1250 aa20.74■□□□□ 0.91
RTN3-211ENST00000542238 ANKRD31Q8N7Z5 1873 aa20.74■□□□□ 0.91
RTN3-211ENST00000542238 ZNF622Q969S3 477 aaKnown RBP eCLIP20.74■□□□□ 0.913e-7■■■■□ 19.7
RTN3-211ENST00000542238 FMNL2Q96PY5 1086 aa20.74■□□□□ 0.91
RTN3-211ENST00000542238 COL3A1P02461 1466 aaPredicted RBP20.74■□□□□ 0.91
RTN3-211ENST00000542238 IL6STP40189 918 aaPredicted RBP20.73■□□□□ 0.91
RTN3-211ENST00000542238 JMYQ8N9B5 988 aa20.73■□□□□ 0.91
RTN3-211ENST00000542238 BRIP1Q9BX63 1249 aa20.73■□□□□ 0.91
RTN3-211ENST00000542238 TBC1D2BQ9UPU7 963 aa20.73■□□□□ 0.91
RTN3-211ENST00000542238 NPHP1O15259 732 aa20.72■□□□□ 0.91
RTN3-211ENST00000542238 PRELPP51888 382 aa20.72■□□□□ 0.91
RTN3-211ENST00000542238 DPY19L2Q6NUT2 758 aa20.72■□□□□ 0.91
RTN3-211ENST00000542238 NFKBIEO00221 500 aa20.71■□□□□ 0.91
RTN3-211ENST00000542238 SETDB2Q96T68 719 aa20.71■□□□□ 0.91
RTN3-211ENST00000542238 DICER1Q9UPY3 1922 aaKnown RBP20.7■□□□□ 0.91
RTN3-211ENST00000542238 PRR5LQ6MZQ0 368 aa20.7■□□□□ 0.9
RTN3-211ENST00000542238 CFAP53Q96M91 514 aa20.7■□□□□ 0.9
RTN3-211ENST00000542238 FER1L6Q2WGJ9 1857 aa20.69■□□□□ 0.9
RTN3-211ENST00000542238 BTBD11A6QL63 1104 aa20.69■□□□□ 0.9
RTN3-211ENST00000542238 C21orf2O43822 256 aa20.69■□□□□ 0.9
RTN3-211ENST00000542238 A1BGP04217 495 aa20.69■□□□□ 0.9
RTN3-211ENST00000542238 ZNF219Q9P2Y4 722 aaPredicted RBP20.69■□□□□ 0.9
RTN3-211ENST00000542238 COL11A2P13942 1736 aaPredicted RBP20.68■□□□□ 0.9
RTN3-211ENST00000542238 CCDC24Q8N4L8 307 aa20.68■□□□□ 0.9
RTN3-211ENST00000542238 CNBD1Q8NA66 436 aa20.68■□□□□ 0.9
RTN3-211ENST00000542238 CEMIPQ8WUJ3 1361 aa20.68■□□□□ 0.9
RTN3-211ENST00000542238 CACNA1SQ13698 1873 aa20.67■□□□□ 0.9
RTN3-211ENST00000542238 ST5P78524 1137 aa20.67■□□□□ 0.9
RTN3-211ENST00000542238 ERFEQ4G0M1 354 aa20.67■□□□□ 0.9
RTN3-211ENST00000542238 CNKSR1Q969H4 720 aa20.67■□□□□ 0.9
RTN3-211ENST00000542238 CAMTA2O94983 1202 aa20.66■□□□□ 0.9
RTN3-211ENST00000542238 PRKAR2BP31323 418 aa20.66■□□□□ 0.9
RTN3-211ENST00000542238 DZIP3Q86Y13 1208 aaKnown RBP20.66■□□□□ 0.9
RTN3-211ENST00000542238 PHACTR3Q96KR7 559 aa20.66■□□□□ 0.9
RTN3-211ENST00000542238 NUDCQ9Y266 331 aa20.66■□□□□ 0.9
RTN3-211ENST00000542238 BCORQ6W2J9 1755 aa20.65■□□□□ 0.9
RTN3-211ENST00000542238 STYK1Q6J9G0 422 aa20.65■□□□□ 0.9
RTN3-211ENST00000542238 LTBP3Q9NS15 1303 aa20.64■□□□□ 0.89
RTN3-211ENST00000542238 KCNQ3O43525 872 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms