RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 PIM2Q9P1W9 311 aa11.39□□□□□ -0.59
USP28-203ENST00000537490 NARFQ9UHQ1 456 aa11.39□□□□□ -0.59
USP28-203ENST00000537490 N4BP2Q86UW6 1770 aaPredicted RBP11.39□□□□□ -0.59
USP28-203ENST00000537490 GNAT3A8MTJ3 354 aa11.38□□□□□ -0.59
USP28-203ENST00000537490 GAS2L2Q8NHY3 880 aa11.38□□□□□ -0.59
USP28-203ENST00000537490 ZNF496Q96IT1 587 aaPredicted RBP11.38□□□□□ -0.59
USP28-203ENST00000537490 PHACTR3Q96KR7 559 aa11.38□□□□□ -0.59
USP28-203ENST00000537490 ADAMTS7Q9UKP4 1686 aa11.37□□□□□ -0.59
USP28-203ENST00000537490 GOLGB1Q14789 3259 aaKnown RBP11.37□□□□□ -0.59
USP28-203ENST00000537490 TEFQ10587 303 aa11.37□□□□□ -0.59
USP28-203ENST00000537490 DALRD3Q5D0E6 543 aaKnown RBP11.37□□□□□ -0.59
USP28-203ENST00000537490 ZNF790Q6PG37 636 aa11.37□□□□□ -0.59
USP28-203ENST00000537490 TTC5Q8N0Z6 440 aa11.37□□□□□ -0.59
USP28-203ENST00000537490 COL15A1P39059 1388 aa11.37□□□□□ -0.59
USP28-203ENST00000537490 KCNQ3O43525 872 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 STARD3NLO95772 234 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 SERPINB2P05120 415 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 PRKAR2BP31323 418 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 EIF5P55010 431 aaKnown RBP11.36□□□□□ -0.59
USP28-203ENST00000537490 C9orf131Q5VYM1 1079 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 RSPH6AQ9H0K4 717 aa11.36□□□□□ -0.59
USP28-203ENST00000537490 HSPA6P17066 643 aa11.35□□□□□ -0.59
USP28-203ENST00000537490 PPP2R1AP30153 589 aa11.35□□□□□ -0.59
USP28-203ENST00000537490 CFAP53Q96M91 514 aa11.35□□□□□ -0.59
USP28-203ENST00000537490 HEG1Q9ULI3 1381 aa11.35□□□□□ -0.59
USP28-203ENST00000537490 CEMIPQ8WUJ3 1361 aa11.34□□□□□ -0.59
USP28-203ENST00000537490 A1BGP04217 495 aa11.34□□□□□ -0.59
USP28-203ENST00000537490 BICDL1Q6ZP65 573 aa11.34□□□□□ -0.59
USP28-203ENST00000537490 TEX13AQ9BXU3 409 aaPredicted RBP11.34□□□□□ -0.59
USP28-203ENST00000537490 NMRK2Q9NPI5 230 aa11.34□□□□□ -0.59
USP28-203ENST00000537490 A0A087WZG4 1122 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 BTBD11A6QL63 1104 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 U2AF1L5P0DN76 240 aaPredicted RBP11.33□□□□□ -0.6
USP28-203ENST00000537490 U2AF1Q01081 240 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP28-203ENST00000537490 TBC1D9BQ66K14 1250 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 FMNL2Q96PY5 1086 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 TBC1D2BQ9UPU7 963 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 NUDCQ9Y266 331 aa11.33□□□□□ -0.6
USP28-203ENST00000537490 IL6STP40189 918 aaPredicted RBP11.32□□□□□ -0.6
USP28-203ENST00000537490 RNF181Q9P0P0 153 aa11.32□□□□□ -0.6
USP28-203ENST00000537490 ZNF330Q9Y3S2 320 aaPredicted RBP11.32□□□□□ -0.6
USP28-203ENST00000537490 USP16Q9Y5T5 823 aa11.32□□□□□ -0.6
USP28-203ENST00000537490 BRCA1P38398 1863 aaKnown RBP11.32□□□□□ -0.6
USP28-203ENST00000537490 CARMIL3Q8ND23 1372 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 PRAMEF22A3QJZ6 481 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 TOMM70O94826 608 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 RASSF7Q02833 373 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 DCTN1Q14203 1278 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 MCM10Q7L590 875 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 C2CD5Q86YS7 1000 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 CCDC24Q8N4L8 307 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 UBR2Q8IWV8 1755 aa11.31□□□□□ -0.6
USP28-203ENST00000537490 H0YIN7 160 aa11.3□□□□□ -0.6
USP28-203ENST00000537490 CAMTA2O94983 1202 aa11.3□□□□□ -0.6
USP28-203ENST00000537490 PIP4K2AP48426 406 aaPredicted RBP11.3□□□□□ -0.6
USP28-203ENST00000537490 PRELPP51888 382 aa11.3□□□□□ -0.6
USP28-203ENST00000537490 TTLL6Q8N841 843 aa11.3□□□□□ -0.6
USP28-203ENST00000537490 RTF1Q92541 710 aaKnown RBP11.3□□□□□ -0.6
USP28-203ENST00000537490 VIRMAQ69YN4 1812 aaKnown RBP11.3□□□□□ -0.6
USP28-203ENST00000537490 PRR5LQ6MZQ0 368 aa11.29□□□□□ -0.6
USP28-203ENST00000537490 NRXN2Q9P2S2 1712 aa11.29□□□□□ -0.6
USP28-203ENST00000537490 ARFGEF1Q9Y6D6 1849 aa11.28□□□□□ -0.6
USP28-203ENST00000537490 SNRPA1P09661 255 aaKnown RBP11.28□□□□□ -0.6
USP28-203ENST00000537490 DZIP3Q86Y13 1208 aaKnown RBP11.28□□□□□ -0.6
USP28-203ENST00000537490 BRIP1Q9BX63 1249 aa11.28□□□□□ -0.6
USP28-203ENST00000537490 RRAGCQ9HB90 399 aa11.28□□□□□ -0.6
USP28-203ENST00000537490 AFDNP55196 1824 aaKnown RBP11.28□□□□□ -0.6
USP28-203ENST00000537490 SIPA1L3O60292 1781 aaPredicted RBP11.27□□□□□ -0.61
USP28-203ENST00000537490 NFKBIEO00221 500 aa11.27□□□□□ -0.61
USP28-203ENST00000537490 HTATSF1O43719 755 aaKnown RBP11.27□□□□□ -0.61
USP28-203ENST00000537490 PPP4R3CPQ6ZMV5 832 aa11.27□□□□□ -0.61
USP28-203ENST00000537490 NPM2Q86SE8 214 aaKnown RBP11.27□□□□□ -0.61
USP28-203ENST00000537490 RBM46Q8TBY0 533 aaKnown RBP11.27□□□□□ -0.61
USP28-203ENST00000537490 ZNF622Q969S3 477 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP28-203ENST00000537490 SETDB2Q96T68 719 aa11.27□□□□□ -0.61
USP28-203ENST00000537490 MIS18AQ9NYP9 233 aa11.27□□□□□ -0.61
USP28-203ENST00000537490 KDM2BQ8NHM5 1336 aa11.27□□□□□ -0.61
USP28-203ENST00000537490 NBPF26B4DH59 902 aa11.26□□□□□ -0.61
USP28-203ENST00000537490 LMNB1P20700 586 aa11.26□□□□□ -0.61
USP28-203ENST00000537490 PDE6BP35913 854 aa11.26□□□□□ -0.61
USP28-203ENST00000537490 APLP1P51693 650 aa11.26□□□□□ -0.61
USP28-203ENST00000537490 TAF7Q15545 349 aaPredicted RBP11.26□□□□□ -0.61
USP28-203ENST00000537490 NBPF10Q6P3W6 841 aaKnown RBP11.26□□□□□ -0.61
USP28-203ENST00000537490 C16orf71Q8IYS4 520 aaPredicted RBP11.26□□□□□ -0.61
USP28-203ENST00000537490 NBPF15Q8N660 670 aa11.26□□□□□ -0.61
USP28-203ENST00000537490 ZNF219Q9P2Y4 722 aaPredicted RBP11.26□□□□□ -0.61
USP28-203ENST00000537490 C21orf2O43822 256 aa11.25□□□□□ -0.61
USP28-203ENST00000537490 DNAJC5GQ8N7S2 189 aa11.25□□□□□ -0.61
USP28-203ENST00000537490 CNBD1Q8NA66 436 aa11.25□□□□□ -0.61
USP28-203ENST00000537490 PDZRN3Q9UPQ7 1066 aa11.25□□□□□ -0.61
USP28-203ENST00000537490 GLTPD2A6NH11 291 aa11.24□□□□□ -0.61
USP28-203ENST00000537490 CLEC4GQ6UXB4 293 aa11.24□□□□□ -0.61
USP28-203ENST00000537490 PLEKHF1Q96S99 279 aa11.24□□□□□ -0.61
USP28-203ENST00000537490 NPHP1O15259 732 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 SRGNP10124 158 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 ST5P78524 1137 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 HTRA3P83110 453 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 FSTL1Q12841 308 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 STYK1Q6J9G0 422 aa11.23□□□□□ -0.61
USP28-203ENST00000537490 ZC3H4Q9UPT8 1303 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms