RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 ZNF496Q96IT1 587 aaPredicted RBP21.6■■□□□ 1.05
CLSTN3-204ENST00000535313 TEX13AQ9BXU3 409 aaPredicted RBP21.6■■□□□ 1.05
CLSTN3-204ENST00000535313 NARFQ9UHQ1 456 aa21.6■■□□□ 1.05
CLSTN3-204ENST00000535313 CEMIPQ8WUJ3 1361 aa21.6■■□□□ 1.05
CLSTN3-204ENST00000535313 UBR2Q8IWV8 1755 aa21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 CANXP27824 592 aaKnown RBP21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 C1QTNF8P60827 252 aa21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 RTF1Q92541 710 aaKnown RBP21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 ATP10DQ9P241 1426 aa21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 HEG1Q9ULI3 1381 aa21.59■■□□□ 1.05
CLSTN3-204ENST00000535313 BTBD11A6QL63 1104 aa21.58■■□□□ 1.05
CLSTN3-204ENST00000535313 TM4SF1P30408 202 aa21.58■■□□□ 1.05
CLSTN3-204ENST00000535313 FMNL2Q96PY5 1086 aa21.58■■□□□ 1.05
CLSTN3-204ENST00000535313 N4BP2Q86UW6 1770 aaPredicted RBP21.58■■□□□ 1.04
CLSTN3-204ENST00000535313 A0A087WZG4 1122 aa21.57■■□□□ 1.04
CLSTN3-204ENST00000535313 POLRMTO00411 1230 aaKnown RBP21.57■■□□□ 1.04
CLSTN3-204ENST00000535313 KIAA1551Q9HCM1 1747 aa21.57■■□□□ 1.04
CLSTN3-204ENST00000535313 NEFMP07197 916 aa21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 EIF5P55010 431 aaKnown RBP21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 GPBP1L1Q9HC44 474 aaPredicted RBP21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 PIM2Q9P1W9 311 aa21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 ADCY9O60503 1353 aa21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 SIPA1L3O60292 1781 aaPredicted RBP21.55■■□□□ 1.04
CLSTN3-204ENST00000535313 NFIXQ14938 502 aa21.54■■□□□ 1.04
CLSTN3-204ENST00000535313 NPM2Q86SE8 214 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-204ENST00000535313 KCNA3P22001 575 aa21.53■■□□□ 1.04
CLSTN3-204ENST00000535313 ARHGAP27Q6ZUM4 889 aa21.53■■□□□ 1.04
CLSTN3-204ENST00000535313 MCM10Q7L590 875 aa21.53■■□□□ 1.04
CLSTN3-204ENST00000535313 ZNF330Q9Y3S2 320 aaPredicted RBP21.53■■□□□ 1.04
CLSTN3-204ENST00000535313 KCNQ3O43525 872 aa21.52■■□□□ 1.04
CLSTN3-204ENST00000535313 HTATSF1O43719 755 aaKnown RBP21.52■■□□□ 1.04
CLSTN3-204ENST00000535313 ZNF526Q8TF50 670 aaPredicted RBP21.52■■□□□ 1.04
CLSTN3-204ENST00000535313 BCL2L12Q9HB09 334 aa21.52■■□□□ 1.04
CLSTN3-204ENST00000535313 DALRD3Q5D0E6 543 aaKnown RBP21.51■■□□□ 1.03
CLSTN3-204ENST00000535313 SENP3-EIF4A1A0A087X0R7 540 aa21.5■■□□□ 1.03
CLSTN3-204ENST00000535313 SERPINB2P05120 415 aa21.5■■□□□ 1.03
CLSTN3-204ENST00000535313 CHRNA5P30532 468 aa21.5■■□□□ 1.03
CLSTN3-204ENST00000535313 IL6STP40189 918 aaPredicted RBP21.5■■□□□ 1.03
CLSTN3-204ENST00000535313 A1BGP04217 495 aa21.49■■□□□ 1.03
CLSTN3-204ENST00000535313 DCTN1Q14203 1278 aa21.49■■□□□ 1.03
CLSTN3-204ENST00000535313 BICDL1Q6ZP65 573 aa21.49■■□□□ 1.03
CLSTN3-204ENST00000535313 BRCA1P38398 1863 aaKnown RBP21.48■■□□□ 1.03
CLSTN3-204ENST00000535313 TBC1D2BQ9UPU7 963 aa21.48■■□□□ 1.03
CLSTN3-204ENST00000535313 SNRPA1P09661 255 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-204ENST00000535313 PNNQ9H307 717 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-204ENST00000535313 TAF7Q15545 349 aaPredicted RBP21.46■■□□□ 1.03
CLSTN3-204ENST00000535313 USP16Q9Y5T5 823 aa21.46■■□□□ 1.03
CLSTN3-204ENST00000535313 RALBP1Q15311 655 aa21.45■■□□□ 1.02
CLSTN3-204ENST00000535313 TBC1D9BQ66K14 1250 aa21.45■■□□□ 1.02
CLSTN3-204ENST00000535313 AFDNP55196 1824 aaKnown RBP21.45■■□□□ 1.02
CLSTN3-204ENST00000535313 ARFGEF1Q9Y6D6 1849 aa21.44■■□□□ 1.02
CLSTN3-204ENST00000535313 NRXN2Q9P2S2 1712 aa21.43■■□□□ 1.02
CLSTN3-204ENST00000535313 PRAMEF22A3QJZ6 481 aa21.43■■□□□ 1.02
CLSTN3-204ENST00000535313 PLEKHF1Q96S99 279 aa21.43■■□□□ 1.02
CLSTN3-204ENST00000535313 MAPK8IP3Q9UPT6 1336 aa21.43■■□□□ 1.02
CLSTN3-204ENST00000535313 H0YIN7 160 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 CAMTA2O94983 1202 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 NFE2L2Q16236 605 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 C9orf131Q5VYM1 1079 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 DZIP3Q86Y13 1208 aaKnown RBP21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 C2CD5Q86YS7 1000 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 CARMIL3Q8ND23 1372 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 PNISRQ8TF01 805 aaKnown RBP21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 SETDB2Q96T68 719 aa21.42■■□□□ 1.02
CLSTN3-204ENST00000535313 SCN7AQ01118 1682 aa21.41■■□□□ 1.02
CLSTN3-204ENST00000535313 PIP4K2AP48426 406 aaPredicted RBP21.41■■□□□ 1.02
CLSTN3-204ENST00000535313 MIS18AQ9NYP9 233 aa21.41■■□□□ 1.02
CLSTN3-204ENST00000535313 NPHP1O15259 732 aa21.4■■□□□ 1.02
CLSTN3-204ENST00000535313 DDX10Q13206 875 aaKnown RBP21.4■■□□□ 1.02
CLSTN3-204ENST00000535313 TTLL6Q8N841 843 aa21.4■■□□□ 1.02
CLSTN3-204ENST00000535313 PDE6BP35913 854 aa21.39■■□□□ 1.01
CLSTN3-204ENST00000535313 BRIP1Q9BX63 1249 aa21.39■■□□□ 1.01
CLSTN3-204ENST00000535313 PDZRN3Q9UPQ7 1066 aa21.39■■□□□ 1.01
CLSTN3-204ENST00000535313 PRR5LQ6MZQ0 368 aa21.38■■□□□ 1.01
CLSTN3-204ENST00000535313 ZNF652Q9Y2D9 606 aa21.38■■□□□ 1.01
CLSTN3-204ENST00000535313 KIF3CO14782 793 aa21.37■■□□□ 1.01
CLSTN3-204ENST00000535313 CLEC4GQ6UXB4 293 aa21.37■■□□□ 1.01
CLSTN3-204ENST00000535313 CNBD1Q8NA66 436 aa21.37■■□□□ 1.01
CLSTN3-204ENST00000535313 RNF181Q9P0P0 153 aa21.37■■□□□ 1.01
CLSTN3-204ENST00000535313 DLG5Q8TDM6 1919 aa21.36■■□□□ 1.01
CLSTN3-204ENST00000535313 ST5P78524 1137 aa21.36■■□□□ 1.01
CLSTN3-204ENST00000535313 ZNF622Q969S3 477 aaKnown RBP eCLIP21.36■■□□□ 1.01
CLSTN3-204ENST00000535313 NBPF26B4DH59 902 aa21.35■■□□□ 1.01
CLSTN3-204ENST00000535313 NBPF10Q6P3W6 841 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-204ENST00000535313 CCDC24Q8N4L8 307 aa21.35■■□□□ 1.01
CLSTN3-204ENST00000535313 NBPF15Q8N660 670 aa21.35■■□□□ 1.01
CLSTN3-204ENST00000535313 THUMPD2Q9BTF0 503 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-204ENST00000535313 DLEC1Q9Y238 1755 aa21.34■■□□□ 1.01
CLSTN3-204ENST00000535313 BCORQ6W2J9 1755 aa21.33■■□□□ 1.01
CLSTN3-204ENST00000535313 MYBBP1AQ9BQG0 1328 aaKnown RBP21.33■■□□□ 1.01
CLSTN3-204ENST00000535313 RGL2O15211 777 aa21.33■■□□□ 1.01
CLSTN3-204ENST00000535313 NBPF5PQ86XG9 351 aaPredicted RBP21.33■■□□□ 1.01
CLSTN3-204ENST00000535313 RIPK4P57078 832 aa21.32■■□□□ 1
CLSTN3-204ENST00000535313 EIF4A1P60842 406 aaKnown RBP21.32■■□□□ 1
CLSTN3-204ENST00000535313 RASSF7Q02833 373 aa21.32■■□□□ 1
CLSTN3-204ENST00000535313 KDM2BQ8NHM5 1336 aa21.31■■□□□ 1
CLSTN3-204ENST00000535313 NMRK2Q9NPI5 230 aa21.31■■□□□ 1
CLSTN3-204ENST00000535313 ANKRD31Q8N7Z5 1873 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 HSPA6P17066 643 aa21.3■■□□□ 1
CLSTN3-204ENST00000535313 LMNB1P20700 586 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms