RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 POLD1P28340 1107 aa26.91■■□□□ 1.9
CCS-208ENST00000533244 TRIM35Q9UPQ4 493 aa26.91■■□□□ 1.9
CCS-208ENST00000533244 STARD3NLO95772 234 aa26.9■■□□□ 1.9
CCS-208ENST00000533244 MSL1Q68DK7 614 aa26.9■■□□□ 1.9
CCS-208ENST00000533244 ZBTB1Q9Y2K1 713 aa26.9■■□□□ 1.9
CCS-208ENST00000533244 MIS18AQ9NYP9 233 aa26.9■■□□□ 1.9
CCS-208ENST00000533244 NEUROD2Q15784 382 aa26.89■■□□□ 1.89
CCS-208ENST00000533244 APAF1O14727 1248 aa26.87■■□□□ 1.89
CCS-208ENST00000533244 SNRPA1P09661 255 aaKnown RBP26.87■■□□□ 1.89
CCS-208ENST00000533244 BABAM1Q9NWV8 329 aa26.87■■□□□ 1.89
CCS-208ENST00000533244 RFC4P35249 363 aa26.86■■□□□ 1.89
CCS-208ENST00000533244 USP42Q9H9J4 1324 aaKnown RBP26.85■■□□□ 1.89
CCS-208ENST00000533244 LAMB4A4D0S4 1761 aa26.85■■□□□ 1.89
CCS-208ENST00000533244 PRAMEF22A3QJZ6 481 aa26.85■■□□□ 1.89
CCS-208ENST00000533244 GYS1P13807 737 aa26.85■■□□□ 1.89
CCS-208ENST00000533244 FHDC1Q9C0D6 1143 aaPredicted RBP26.85■■□□□ 1.89
CCS-208ENST00000533244 USP16Q9Y5T5 823 aa26.85■■□□□ 1.89
CCS-208ENST00000533244 COL15A1P39059 1388 aa26.85■■□□□ 1.89
CCS-208ENST00000533244 EIF5P55010 431 aaKnown RBP26.84■■□□□ 1.89
CCS-208ENST00000533244 EIF4A1P60842 406 aaKnown RBP26.84■■□□□ 1.89
CCS-208ENST00000533244 NLGN1Q8N2Q7 840 aa26.82■■□□□ 1.88
CCS-208ENST00000533244 SYT17Q9BSW7 474 aa26.82■■□□□ 1.88
CCS-208ENST00000533244 CANXP27824 592 aaKnown RBP26.82■■□□□ 1.88
CCS-208ENST00000533244 SRP68Q9UHB9 627 aaKnown RBP26.82■■□□□ 1.88
CCS-208ENST00000533244 TSPYL4Q9UJ04 414 aa26.82■■□□□ 1.88
CCS-208ENST00000533244 GIGYF1O75420 1035 aaPredicted RBP26.81■■□□□ 1.88
CCS-208ENST00000533244 A1BGP04217 495 aa26.81■■□□□ 1.88
CCS-208ENST00000533244 IL6STP40189 918 aaPredicted RBP26.81■■□□□ 1.88
CCS-208ENST00000533244 CHL1O00533 1208 aa26.79■■□□□ 1.88
CCS-208ENST00000533244 NARFQ9UHQ1 456 aa26.79■■□□□ 1.88
CCS-208ENST00000533244 MMP10P09238 476 aa26.77■■□□□ 1.88
CCS-208ENST00000533244 SCN7AQ01118 1682 aa26.77■■□□□ 1.88
CCS-208ENST00000533244 FKBP8Q14318 412 aa26.76■■□□□ 1.87
CCS-208ENST00000533244 USPL1Q5W0Q7 1092 aa26.76■■□□□ 1.87
CCS-208ENST00000533244 A0A087WZG4 1122 aa26.75■■□□□ 1.87
CCS-208ENST00000533244 ZPR1O75312 459 aa26.75■■□□□ 1.87
CCS-208ENST00000533244 NCBP3Q53F19 620 aaKnown RBP26.75■■□□□ 1.87
CCS-208ENST00000533244 CFAP44Q96MT7 982 aa26.74■■□□□ 1.87
CCS-208ENST00000533244 BCL2L12Q9HB09 334 aa26.74■■□□□ 1.87
CCS-208ENST00000533244 NBPF26B4DH59 902 aa26.73■■□□□ 1.87
CCS-208ENST00000533244 ZNF853P0CG23 659 aa26.73■■□□□ 1.87
CCS-208ENST00000533244 CCDC27Q2M243 656 aa26.73■■□□□ 1.87
CCS-208ENST00000533244 NBPF10Q6P3W6 841 aaKnown RBP26.73■■□□□ 1.87
CCS-208ENST00000533244 NBPF15Q8N660 670 aa26.73■■□□□ 1.87
CCS-208ENST00000533244 CD2APQ9Y5K6 639 aa26.73■■□□□ 1.87
CCS-208ENST00000533244 BCORQ6W2J9 1755 aa26.72■■□□□ 1.87
CCS-208ENST00000533244 PIP4K2AP48426 406 aaPredicted RBP26.72■■□□□ 1.87
CCS-208ENST00000533244 CALD1Q05682 793 aaKnown RBP26.72■■□□□ 1.87
CCS-208ENST00000533244 KIF13BQ9NQT8 1826 aa26.71■■□□□ 1.87
CCS-208ENST00000533244 TM4SF1P30408 202 aa26.71■■□□□ 1.87
CCS-208ENST00000533244 DDR1Q08345 913 aa26.7■■□□□ 1.86
CCS-208ENST00000533244 KLHL34Q8N239 644 aa26.7■■□□□ 1.86
CCS-208ENST00000533244 NLGN2Q8NFZ4 835 aa26.7■■□□□ 1.86
CCS-208ENST00000533244 IFT57Q9NWB7 429 aa26.7■■□□□ 1.86
CCS-208ENST00000533244 LAS1LQ9Y4W2 734 aaKnown RBP26.7■■□□□ 1.86
CCS-208ENST00000533244 C10orf71Q711Q0 1435 aa26.69■■□□□ 1.86
CCS-208ENST00000533244 ZNF330Q9Y3S2 320 aaPredicted RBP26.69■■□□□ 1.86
CCS-208ENST00000533244 ERBB4Q15303 1308 aa26.68■■□□□ 1.86
CCS-208ENST00000533244 FAM9BQ8IZU0 186 aa26.68■■□□□ 1.86
CCS-208ENST00000533244 TBC1D2BQ9UPU7 963 aa26.68■■□□□ 1.86
CCS-208ENST00000533244 PARP3Q9Y6F1 533 aa26.68■■□□□ 1.86
CCS-208ENST00000533244 POLRMTO00411 1230 aaKnown RBP26.67■■□□□ 1.86
CCS-208ENST00000533244 CAMTA2O94983 1202 aa26.67■■□□□ 1.86
CCS-208ENST00000533244 WWC1Q8IX03 1113 aa26.67■■□□□ 1.86
CCS-208ENST00000533244 MBIPQ9NS73 344 aa26.67■■□□□ 1.86
CCS-208ENST00000533244 NRXN2Q9P2S2 1712 aa26.66■■□□□ 1.86
CCS-208ENST00000533244 GNAI1P63096 354 aa26.66■■□□□ 1.86
CCS-208ENST00000533244 NFIXQ14938 502 aa26.66■■□□□ 1.86
CCS-208ENST00000533244 NPM2Q86SE8 214 aaKnown RBP26.66■■□□□ 1.86
CCS-208ENST00000533244 DZIP3Q86Y13 1208 aaKnown RBP26.66■■□□□ 1.86
CCS-208ENST00000533244 CCER2I3L3R5 266 aa26.65■■□□□ 1.86
CCS-208ENST00000533244 KRT24Q2M2I5 525 aa26.65■■□□□ 1.86
CCS-208ENST00000533244 KIAA1551Q9HCM1 1747 aa26.65■■□□□ 1.86
CCS-208ENST00000533244 RGL2O15211 777 aa26.65■■□□□ 1.86
CCS-208ENST00000533244 SENP3-EIF4A1A0A087X0R7 540 aa26.64■■□□□ 1.85
CCS-208ENST00000533244 HOXB7P09629 217 aa26.64■■□□□ 1.85
CCS-208ENST00000533244 AFDNP55196 1824 aaKnown RBP26.63■■□□□ 1.85
CCS-208ENST00000533244 LRP10Q7Z4F1 713 aa26.63■■□□□ 1.85
CCS-208ENST00000533244 PDIA6Q15084 440 aa26.62■■□□□ 1.85
CCS-208ENST00000533244 IL16Q14005 1332 aa26.61■■□□□ 1.85
CCS-208ENST00000533244 TBC1D9BQ66K14 1250 aa26.61■■□□□ 1.85
CCS-208ENST00000533244 PXDNLA1KZ92 1463 aa26.61■■□□□ 1.85
CCS-208ENST00000533244 EIF2S2P20042 333 aaKnown RBP26.6■■□□□ 1.85
CCS-208ENST00000533244 CLEC4GQ6UXB4 293 aa26.6■■□□□ 1.85
CCS-208ENST00000533244 NGEFQ8N5V2 710 aa26.6■■□□□ 1.85
CCS-208ENST00000533244 MYL6BP14649 208 aa26.58■■□□□ 1.85
CCS-208ENST00000533244 DIEXFQ68CQ4 756 aaKnown RBP26.58■■□□□ 1.85
CCS-208ENST00000533244 TGFB2P61812 414 aa26.57■■□□□ 1.84
CCS-208ENST00000533244 DUSP27Q5VZP5 1158 aa26.57■■□□□ 1.84
CCS-208ENST00000533244 CARMIL3Q8ND23 1372 aa26.57■■□□□ 1.84
CCS-208ENST00000533244 DCAF8L1A6NGE4 600 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 SERPINB2P05120 415 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 PROSER3Q2NL68 480 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 WDR63Q8IWG1 891 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 ZNF652Q9Y2D9 606 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 BICDL1Q6ZP65 573 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 TTLL7Q6ZT98 887 aa26.56■■□□□ 1.84
CCS-208ENST00000533244 MAP3K15Q6ZN16 1313 aa26.55■■□□□ 1.84
CCS-208ENST00000533244 GOLGB1Q14789 3259 aaKnown RBP26.55■■□□□ 1.84
CCS-208ENST00000533244 ERVV-1B6SEH8 477 aa26.55■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms