RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KDM3BQ7LBC6 1761 aa27.02■■□□□ 1.92
VPS28-212ENST00000530836 SLC39A6Q13433 755 aa27.01■■□□□ 1.92
VPS28-212ENST00000530836 KRT24Q2M2I5 525 aa27.01■■□□□ 1.92
VPS28-212ENST00000530836 TRIM27P14373 513 aa27.01■■□□□ 1.91
VPS28-212ENST00000530836 LRRC4BQ9NT99 713 aa27.01■■□□□ 1.91
VPS28-212ENST00000530836 LOC102724428A0A0B4J2F2 783 aa27■■□□□ 1.91
VPS28-212ENST00000530836 SIK1P57059 783 aa27■■□□□ 1.91
VPS28-212ENST00000530836 B4GALNT3Q6L9W6 998 aa27■■□□□ 1.91
VPS28-212ENST00000530836 PANK1Q8TE04 598 aa27■■□□□ 1.91
VPS28-212ENST00000530836 CCNL1Q9UK58 526 aaPredicted RBP27■■□□□ 1.91
VPS28-212ENST00000530836 RGPD3A6NKT7 1758 aaPredicted RBP27■■□□□ 1.91
VPS28-212ENST00000530836 SIPA1L3O60292 1781 aaPredicted RBP27■■□□□ 1.91
VPS28-212ENST00000530836 RGPD4Q7Z3J3 1758 aa27■■□□□ 1.91
VPS28-212ENST00000530836 EIF4A1P60842 406 aaKnown RBP26.99■■□□□ 1.91
VPS28-212ENST00000530836 CCDC30Q5VVM6 783 aa26.99■■□□□ 1.91
VPS28-212ENST00000530836 KCNQ4P56696 695 aa26.98■■□□□ 1.91
VPS28-212ENST00000530836 ZNF790Q6PG37 636 aa26.98■■□□□ 1.91
VPS28-212ENST00000530836 API5Q9BZZ5 524 aaKnown RBP26.98■■□□□ 1.91
VPS28-212ENST00000530836 PTCD1O75127 700 aaKnown RBP26.97■■□□□ 1.91
VPS28-212ENST00000530836 RBM42Q9BTD8 480 aaKnown RBP26.97■■□□□ 1.91
VPS28-212ENST00000530836 STK31Q9BXU1 1019 aa26.97■■□□□ 1.91
VPS28-212ENST00000530836 COG6Q9Y2V7 657 aa26.97■■□□□ 1.91
VPS28-212ENST00000530836 MVPQ14764 893 aaKnown RBP26.96■■□□□ 1.91
VPS28-212ENST00000530836 TTC5Q8N0Z6 440 aa26.96■■□□□ 1.91
VPS28-212ENST00000530836 PTPRCP08575 1304 aa26.95■■□□□ 1.91
VPS28-212ENST00000530836 RLBP1P12271 317 aa26.95■■□□□ 1.91
VPS28-212ENST00000530836 CLUAP1Q96AJ1 413 aa26.95■■□□□ 1.91
VPS28-212ENST00000530836 SLC4A9Q96Q91 983 aa26.95■■□□□ 1.91
VPS28-212ENST00000530836 KCNQ3O43525 872 aa26.94■■□□□ 1.9
VPS28-212ENST00000530836 HMGB2P26583 209 aaKnown RBP26.94■■□□□ 1.9
VPS28-212ENST00000530836 ATP6V1AP38606 617 aa26.94■■□□□ 1.9
VPS28-212ENST00000530836 CHMP4BQ9H444 224 aaKnown RBP26.94■■□□□ 1.9
VPS28-212ENST00000530836 DDX19BQ9UMR2 479 aa26.94■■□□□ 1.9
VPS28-212ENST00000530836 LY75O60449 1722 aa26.93■■□□□ 1.9
VPS28-212ENST00000530836 HEG1Q9ULI3 1381 aa26.93■■□□□ 1.9
VPS28-212ENST00000530836 SLC4A2P04920 1241 aa26.92■■□□□ 1.9
VPS28-212ENST00000530836 NBPF14Q5TI25 921 aa26.92■■□□□ 1.9
VPS28-212ENST00000530836 ZNF496Q96IT1 587 aaPredicted RBP26.91■■□□□ 1.9
VPS28-212ENST00000530836 RREB1Q92766 1687 aa26.91■■□□□ 1.9
VPS28-212ENST00000530836 TCERG1O14776 1098 aaKnown RBP26.9■■□□□ 1.9
VPS28-212ENST00000530836 ITPK1Q13572 414 aa26.9■■□□□ 1.9
VPS28-212ENST00000530836 TNNQ9UQP3 1299 aa26.9■■□□□ 1.9
VPS28-212ENST00000530836 HDGFL1Q5TGJ6 251 aa26.9■■□□□ 1.9
VPS28-212ENST00000530836 VSIG10Q8N0Z9 540 aa26.9■■□□□ 1.9
VPS28-212ENST00000530836 CACNA1FO60840 1977 aa26.89■■□□□ 1.9
VPS28-212ENST00000530836 FMNL2Q96PY5 1086 aa26.89■■□□□ 1.9
VPS28-212ENST00000530836 ABCC4O15439 1325 aa26.89■■□□□ 1.89
VPS28-212ENST00000530836 KCPQ6ZWJ8 1503 aa26.88■■□□□ 1.89
VPS28-212ENST00000530836 ANO8Q9HCE9 1232 aaPredicted RBP26.88■■□□□ 1.89
VPS28-212ENST00000530836 PAPPAQ13219 1627 aa26.88■■□□□ 1.89
VPS28-212ENST00000530836 GIGYF1O75420 1035 aaPredicted RBP26.87■■□□□ 1.89
VPS28-212ENST00000530836 ITPRIPQ8IWB1 547 aa26.87■■□□□ 1.89
VPS28-212ENST00000530836 LINC00116Q8NCU8 138 aa26.87■■□□□ 1.89
VPS28-212ENST00000530836 TMEM57Q8N5G2 664 aa26.87■■□□□ 1.89
VPS28-212ENST00000530836 AKT1S1Q96B36 256 aa26.87■■□□□ 1.89
VPS28-212ENST00000530836 STK32BQ9NY57 414 aa26.87■■□□□ 1.89
VPS28-212ENST00000530836 NUP188Q5SRE5 1749 aa26.86■■□□□ 1.89
VPS28-212ENST00000530836 SLC15A2Q16348 729 aa26.85■■□□□ 1.89
VPS28-212ENST00000530836 ZNF827Q17R98 1081 aa26.84■■□□□ 1.89
VPS28-212ENST00000530836 DNAJC10Q8IXB1 793 aa26.84■■□□□ 1.89
VPS28-212ENST00000530836 TEX13AQ9BXU3 409 aaPredicted RBP26.83■■□□□ 1.88
VPS28-212ENST00000530836 ZNF831Q5JPB2 1677 aa26.82■■□□□ 1.88
VPS28-212ENST00000530836 SNRPA1P09661 255 aaKnown RBP26.81■■□□□ 1.88
VPS28-212ENST00000530836 R3HDM1Q15032 1099 aaKnown RBP26.81■■□□□ 1.88
VPS28-212ENST00000530836 RC3H1Q5TC82 1133 aaKnown RBP26.81■■□□□ 1.88
VPS28-212ENST00000530836 CENPQQ7L2Z9 268 aaPredicted RBP26.81■■□□□ 1.88
VPS28-212ENST00000530836 UBR2Q8IWV8 1755 aa26.81■■□□□ 1.88
VPS28-212ENST00000530836 DBF4Q9UBU7 674 aaPredicted RBP26.81■■□□□ 1.88
VPS28-212ENST00000530836 EIF2S2P20042 333 aaKnown RBP26.8■■□□□ 1.88
VPS28-212ENST00000530836 FLIIQ13045 1269 aa26.8■■□□□ 1.88
VPS28-212ENST00000530836 INTS3Q68E01 1043 aaKnown RBP26.8■■□□□ 1.88
VPS28-212ENST00000530836 CYP19A1P11511 503 aaPredicted RBP26.79■■□□□ 1.88
VPS28-212ENST00000530836 TFCP2L1Q9NZI6 479 aa26.79■■□□□ 1.88
VPS28-212ENST00000530836 CNTNAP4Q9C0A0 1308 aa26.79■■□□□ 1.88
VPS28-212ENST00000530836 STARD3NLO95772 234 aa26.79■■□□□ 1.88
VPS28-212ENST00000530836 AK7Q96M32 723 aa26.79■■□□□ 1.88
VPS28-212ENST00000530836 NECTIN2Q92692 538 aa26.78■■□□□ 1.88
VPS28-212ENST00000530836 PRAMEF22A3QJZ6 481 aa26.77■■□□□ 1.88
VPS28-212ENST00000530836 PSDA5PKW4 1024 aaPredicted RBP26.77■■□□□ 1.88
VPS28-212ENST00000530836 CRKLP46109 303 aaKnown RBP26.77■■□□□ 1.88
VPS28-212ENST00000530836 ZBTB40Q9NUA8 1239 aa26.77■■□□□ 1.88
VPS28-212ENST00000530836 G2E3Q7L622 706 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 USP16Q9Y5T5 823 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 C5P01031 1676 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 KDM2BQ8NHM5 1336 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 CCT4P50991 539 aaKnown RBP26.76■■□□□ 1.87
VPS28-212ENST00000530836 FKBP5Q13451 457 aaPredicted RBP26.76■■□□□ 1.87
VPS28-212ENST00000530836 INTS5Q6P9B9 1019 aaKnown RBP26.76■■□□□ 1.87
VPS28-212ENST00000530836 HYPKQ9NX55 129 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 CHPF2Q9P2E5 772 aa26.76■■□□□ 1.87
VPS28-212ENST00000530836 CICQ96RK0 1608 aaPredicted RBP26.75■■□□□ 1.87
VPS28-212ENST00000530836 ZBTB7BO15156 539 aaPredicted RBP26.75■■□□□ 1.87
VPS28-212ENST00000530836 C4BP0C0L5 1744 aa26.75■■□□□ 1.87
VPS28-212ENST00000530836 TAF1LQ8IZX4 1826 aa26.74■■□□□ 1.87
VPS28-212ENST00000530836 GNPATO15228 680 aa26.74■■□□□ 1.87
VPS28-212ENST00000530836 CCDC87Q9NVE4 849 aa26.74■■□□□ 1.87
VPS28-212ENST00000530836 TJP1Q07157 1748 aa26.73■■□□□ 1.87
VPS28-212ENST00000530836 RPS6KA4O75676 772 aa26.72■■□□□ 1.87
VPS28-212ENST00000530836 AMIGO3Q86WK7 504 aa26.72■■□□□ 1.87
VPS28-212ENST00000530836 RWDD1Q9H446 243 aaPredicted RBP26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms