RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 KDM3BQ7LBC6 1761 aa17.53■□□□□ 0.4
VPS28-210ENST00000529182 TRAPPC3LQ5T215 181 aa17.52■□□□□ 0.4
VPS28-210ENST00000529182 USP16Q9Y5T5 823 aa17.52■□□□□ 0.4
VPS28-210ENST00000529182 STARD3NLO95772 234 aa17.51■□□□□ 0.39
VPS28-210ENST00000529182 EIF4A1P60842 406 aaKnown RBP17.51■□□□□ 0.39
VPS28-210ENST00000529182 ARHGEF1Q92888 912 aaKnown RBP17.51■□□□□ 0.39
VPS28-210ENST00000529182 SGIP1Q9BQI5 828 aa17.51■□□□□ 0.39
VPS28-210ENST00000529182 LAS1LQ9Y4W2 734 aaKnown RBP17.51■□□□□ 0.39
VPS28-210ENST00000529182 A1BGP04217 495 aa17.5■□□□□ 0.39
VPS28-210ENST00000529182 SNRPA1P09661 255 aaKnown RBP17.5■□□□□ 0.39
VPS28-210ENST00000529182 CANXP27824 592 aaKnown RBP17.5■□□□□ 0.39
VPS28-210ENST00000529182 TEX13AQ9BXU3 409 aaPredicted RBP17.5■□□□□ 0.39
VPS28-210ENST00000529182 SOS1Q07889 1333 aaPredicted RBP17.49■□□□□ 0.39
VPS28-210ENST00000529182 PIP4K2AP48426 406 aaPredicted RBP17.49■□□□□ 0.39
VPS28-210ENST00000529182 SALL2Q9Y467 1007 aaPredicted RBP17.49■□□□□ 0.39
VPS28-210ENST00000529182 CHL1O00533 1208 aa17.48■□□□□ 0.39
VPS28-210ENST00000529182 ADRA2BP18089 450 aa17.48■□□□□ 0.39
VPS28-210ENST00000529182 MIER1Q8N108 512 aa17.48■□□□□ 0.39
VPS28-210ENST00000529182 PPP1R1BQ9UD71 204 aaPredicted RBP17.48■□□□□ 0.39
VPS28-210ENST00000529182 SRP68Q9UHB9 627 aaKnown RBP17.48■□□□□ 0.39
VPS28-210ENST00000529182 CCER2I3L3R5 266 aa17.47■□□□□ 0.39
VPS28-210ENST00000529182 GIGYF1O75420 1035 aaPredicted RBP17.47■□□□□ 0.39
VPS28-210ENST00000529182 RFC4P35249 363 aa17.47■□□□□ 0.39
VPS28-210ENST00000529182 BABAM1Q9NWV8 329 aa17.47■□□□□ 0.39
VPS28-210ENST00000529182 C4AP0C0L4 1744 aa17.47■□□□□ 0.39
VPS28-210ENST00000529182 COL15A1P39059 1388 aa17.46■□□□□ 0.39
VPS28-210ENST00000529182 POLD1P28340 1107 aa17.46■□□□□ 0.39
VPS28-210ENST00000529182 KRT24Q2M2I5 525 aa17.46■□□□□ 0.39
VPS28-210ENST00000529182 ZNF330Q9Y3S2 320 aaPredicted RBP17.46■□□□□ 0.39
VPS28-210ENST00000529182 GYS1P13807 737 aa17.45■□□□□ 0.38
VPS28-210ENST00000529182 EIF5P55010 431 aaKnown RBP17.45■□□□□ 0.38
VPS28-210ENST00000529182 WWC1Q8IX03 1113 aa17.45■□□□□ 0.38
VPS28-210ENST00000529182 CFAP44Q96MT7 982 aa17.45■□□□□ 0.38
VPS28-210ENST00000529182 ARXQ96QS3 562 aa17.45■□□□□ 0.38
VPS28-210ENST00000529182 COL24A1Q17RW2 1714 aa17.44■□□□□ 0.38
VPS28-210ENST00000529182 ZNF853P0CG23 659 aa17.44■□□□□ 0.38
VPS28-210ENST00000529182 CCDC27Q2M243 656 aa17.44■□□□□ 0.38
VPS28-210ENST00000529182 MBIPQ9NS73 344 aa17.44■□□□□ 0.38
VPS28-210ENST00000529182 USP42Q9H9J4 1324 aaKnown RBP17.44■□□□□ 0.38
VPS28-210ENST00000529182 NBPF26B4DH59 902 aa17.43■□□□□ 0.38
VPS28-210ENST00000529182 IL6STP40189 918 aaPredicted RBP17.43■□□□□ 0.38
VPS28-210ENST00000529182 CALD1Q05682 793 aaKnown RBP17.43■□□□□ 0.38
VPS28-210ENST00000529182 USPL1Q5W0Q7 1092 aa17.43■□□□□ 0.38
VPS28-210ENST00000529182 NBPF10Q6P3W6 841 aaKnown RBP17.43■□□□□ 0.38
VPS28-210ENST00000529182 NBPF15Q8N660 670 aa17.43■□□□□ 0.38
VPS28-210ENST00000529182 IFT57Q9NWB7 429 aa17.43■□□□□ 0.38
VPS28-210ENST00000529182 GNAI1P63096 354 aa17.42■□□□□ 0.38
VPS28-210ENST00000529182 FKBP8Q14318 412 aa17.42■□□□□ 0.38
VPS28-210ENST00000529182 LAMB4A4D0S4 1761 aa17.42■□□□□ 0.38
VPS28-210ENST00000529182 ZPR1O75312 459 aa17.41■□□□□ 0.38
VPS28-210ENST00000529182 EIF2S2P20042 333 aaKnown RBP17.41■□□□□ 0.38
VPS28-210ENST00000529182 KLHL34Q8N239 644 aa17.41■□□□□ 0.38
VPS28-210ENST00000529182 NECTIN2Q92692 538 aa17.41■□□□□ 0.38
VPS28-210ENST00000529182 FHDC1Q9C0D6 1143 aaPredicted RBP17.41■□□□□ 0.38
VPS28-210ENST00000529182 NARFQ9UHQ1 456 aa17.41■□□□□ 0.38
VPS28-210ENST00000529182 TBC1D2BQ9UPU7 963 aa17.41■□□□□ 0.38
VPS28-210ENST00000529182 MMP10P09238 476 aa17.4■□□□□ 0.38
VPS28-210ENST00000529182 NCBP3Q53F19 620 aaKnown RBP17.4■□□□□ 0.38
VPS28-210ENST00000529182 NLGN1Q8N2Q7 840 aa17.4■□□□□ 0.38
VPS28-210ENST00000529182 BCL2L12Q9HB09 334 aa17.4■□□□□ 0.38
VPS28-210ENST00000529182 A0A087WZG4 1122 aa17.39■□□□□ 0.37
VPS28-210ENST00000529182 TSR2Q969E8 191 aaKnown RBP17.39■□□□□ 0.37
VPS28-210ENST00000529182 MYL6BP14649 208 aa17.38■□□□□ 0.37
VPS28-210ENST00000529182 NPM2Q86SE8 214 aaKnown RBP17.38■□□□□ 0.37
VPS28-210ENST00000529182 DZIP3Q86Y13 1208 aaKnown RBP17.38■□□□□ 0.37
VPS28-210ENST00000529182 NGEFQ8N5V2 710 aa17.38■□□□□ 0.37
VPS28-210ENST00000529182 SYT17Q9BSW7 474 aa17.38■□□□□ 0.37
VPS28-210ENST00000529182 ANXA1P04083 346 aa17.37■□□□□ 0.37
VPS28-210ENST00000529182 DUSP27Q5VZP5 1158 aa17.37■□□□□ 0.37
VPS28-210ENST00000529182 ELL2O00472 640 aaPredicted RBP17.36■□□□□ 0.37
VPS28-210ENST00000529182 CAMTA2O94983 1202 aa17.36■□□□□ 0.37
VPS28-210ENST00000529182 DDR1Q08345 913 aa17.36■□□□□ 0.37
VPS28-210ENST00000529182 PROSER3Q2NL68 480 aa17.36■□□□□ 0.37
VPS28-210ENST00000529182 C8orf58Q8NAV2 365 aa17.36■□□□□ 0.37
VPS28-210ENST00000529182 IL16Q14005 1332 aa17.36■□□□□ 0.37
VPS28-210ENST00000529182 PDIA6Q15084 440 aa17.35■□□□□ 0.37
VPS28-210ENST00000529182 BICDL1Q6ZP65 573 aa17.35■□□□□ 0.37
VPS28-210ENST00000529182 WDR63Q8IWG1 891 aa17.35■□□□□ 0.37
VPS28-210ENST00000529182 SPINK5Q9NQ38 1064 aaPredicted RBP17.35■□□□□ 0.37
VPS28-210ENST00000529182 SCN7AQ01118 1682 aa17.35■□□□□ 0.37
VPS28-210ENST00000529182 TM4SF1P30408 202 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 GOLGB1Q14789 3259 aaKnown RBP17.34■□□□□ 0.37
VPS28-210ENST00000529182 NFIXQ14938 502 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 HDGFL1Q5TGJ6 251 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 TTLL7Q6ZT98 887 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 NLGN2Q8NFZ4 835 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 PARP3Q9Y6F1 533 aa17.34■□□□□ 0.37
VPS28-210ENST00000529182 ERBB4Q15303 1308 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 FANCIQ9NVI1 1328 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 POLRMTO00411 1230 aaKnown RBP17.33■□□□□ 0.36
VPS28-210ENST00000529182 HOXB7P09629 217 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 TBC1D9BQ66K14 1250 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 LRP10Q7Z4F1 713 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 TSPYL6Q8N831 410 aa17.33■□□□□ 0.36
VPS28-210ENST00000529182 ZNF521Q96K83 1311 aa17.32■□□□□ 0.36
VPS28-210ENST00000529182 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
VPS28-210ENST00000529182 BCORQ6W2J9 1755 aa17.31■□□□□ 0.36
VPS28-210ENST00000529182 UTRNP46939 3433 aa17.31■□□□□ 0.36
VPS28-210ENST00000529182 HLFQ16534 295 aa17.31■□□□□ 0.36
VPS28-210ENST00000529182 DDX21Q9NR30 783 aaKnown RBP eCLIP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms