RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 TAF1LQ8IZX4 1826 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 DCAF8L1A6NGE4 600 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 KCNQ3O43525 872 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 GNAI1P63096 354 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 CCDC27Q2M243 656 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 NCBP3Q53F19 620 aaKnown RBP7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 MSL1Q68DK7 614 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 INTS5Q6P9B9 1019 aaKnown RBP7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 KLHL34Q8N239 644 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 NLGN1Q8N2Q7 840 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 CFAP44Q96MT7 982 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 ARXQ96QS3 562 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 CHMP4AQ9BY43 222 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 IFT57Q9NWB7 429 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 TRIM35Q9UPQ4 493 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 ZBTB1Q9Y2K1 713 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 COL15A1P39059 1388 aa7.02□□□□□ -1.29
HMGB1P40-201ENST00000525121 SOS1Q07889 1333 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 COL5A3P25940 1745 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 IL6STP40189 918 aaPredicted RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 EIF4A1P60842 406 aaKnown RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 ARHGEF1Q92888 912 aaKnown RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 ZNF652Q9Y2D9 606 aa7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 VIRMAQ69YN4 1812 aaKnown RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 ERBB4Q15303 1308 aa7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 USP42Q9H9J4 1324 aaKnown RBP7.01□□□□□ -1.29
HMGB1P40-201ENST00000525121 DLG5Q8TDM6 1919 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 CHL1O00533 1208 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 GIGYF1O75420 1035 aaPredicted RBP7□□□□□ -1.29
HMGB1P40-201ENST00000525121 A1BGP04217 495 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 HOXB7P09629 217 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 PTGER2P43116 358 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 KIF6Q6ZMV9 814 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 SMIM5Q71RC9 77 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 WWC1Q8IX03 1113 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 SALL2Q9Y467 1007 aaPredicted RBP7□□□□□ -1.29
HMGB1P40-201ENST00000525121 USP16Q9Y5T5 823 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 PARP3Q9Y6F1 533 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 UBR3Q6ZT12 1888 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 KDM3BQ7LBC6 1761 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 IL16Q14005 1332 aa7□□□□□ -1.29
HMGB1P40-201ENST00000525121 TUBGCP6Q96RT7 1819 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 NPHP1O15259 732 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 MMP10P09238 476 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 GYS1P13807 737 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 EIF2S2P20042 333 aaKnown RBP6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 EIF5P55010 431 aaKnown RBP6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 USPL1Q5W0Q7 1092 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 AMIGO3Q86WK7 504 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 DZIP3Q86Y13 1208 aaKnown RBP6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 WDR63Q8IWG1 891 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 MYH16Q9H6N6 1097 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 MBIPQ9NS73 344 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 SRP68Q9UHB9 627 aaKnown RBP6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 NARFQ9UHQ1 456 aa6.99□□□□□ -1.29
HMGB1P40-201ENST00000525121 LAMB4A4D0S4 1761 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 SENP3-EIF4A1A0A087X0R7 540 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 PRAMEF22A3QJZ6 481 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 MYL6BP14649 208 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 HDGFL1Q5TGJ6 251 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 MIER1Q8N108 512 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 SGIP1Q9BQI5 828 aa6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 FHDC1Q9C0D6 1143 aaPredicted RBP6.98□□□□□ -1.29
HMGB1P40-201ENST00000525121 RGL2O15211 777 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 ZNF853P0CG23 659 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 PIP4K2AP48426 406 aaPredicted RBP6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 GOLGA2Q08379 1002 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 FKBP8Q14318 412 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 DUSP27Q5VZP5 1158 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 NECTIN2Q92692 538 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 STK31Q9BXU1 1019 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 TBC1D2BQ9UPU7 963 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 CD2APQ9Y5K6 639 aa6.97□□□□□ -1.29
HMGB1P40-201ENST00000525121 CARMIL3Q8ND23 1372 aa6.96□□□□□ -1.29
HMGB1P40-201ENST00000525121 C4AP0C0L4 1744 aa6.96□□□□□ -1.29
HMGB1P40-201ENST00000525121 NBPF26B4DH59 902 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 CCDC30Q5VVM6 783 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 NBPF10Q6P3W6 841 aaKnown RBP6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 CLEC4GQ6UXB4 293 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 BICDL1Q6ZP65 573 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 NBPF15Q8N660 670 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 TSR2Q969E8 191 aaKnown RBP6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 SETDB2Q96T68 719 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 SYT17Q9BSW7 474 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 DDX21Q9NR30 783 aaKnown RBP eCLIP6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 HYPKQ9NX55 129 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 DBF4Q9UBU7 674 aaPredicted RBP6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 FANCIQ9NVI1 1328 aa6.96□□□□□ -1.3
HMGB1P40-201ENST00000525121 ERVV-1B6SEH8 477 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 E9PSI1 815 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 ELL2O00472 640 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 CAMTA2O94983 1202 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 DDX58O95786 925 aaKnown RBP6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 ST5P78524 1137 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 NFIXQ14938 502 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 KRT24Q2M2I5 525 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 TWISTNBQ3B726 338 aaPredicted RBP6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 HSP90AB3PQ58FF7 597 aa6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 PELP1Q8IZL8 1130 aaKnown RBP6.95□□□□□ -1.3
HMGB1P40-201ENST00000525121 ZBTB3Q9H5J0 574 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms