RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 TAF7Q15545 349 aaPredicted RBP27.65■■■□□ 2.02
VPS28-203ENST00000524521 ZNF316A6NFI3 1004 aaPredicted RBP27.64■■■□□ 2.02
VPS28-203ENST00000524521 USP42Q9H9J4 1324 aaKnown RBP27.64■■■□□ 2.01
VPS28-203ENST00000524521 ZPR1O75312 459 aa27.63■■■□□ 2.01
VPS28-203ENST00000524521 C4AP0C0L4 1744 aa27.62■■■□□ 2.01
VPS28-203ENST00000524521 WDR43Q15061 677 aaKnown RBP eCLIP27.62■■■□□ 2.01
VPS28-203ENST00000524521 DLG5Q8TDM6 1919 aa27.62■■■□□ 2.01
VPS28-203ENST00000524521 MIS18AQ9NYP9 233 aa27.61■■■□□ 2.01
VPS28-203ENST00000524521 PARP3Q9Y6F1 533 aa27.61■■■□□ 2.01
VPS28-203ENST00000524521 YY1P25490 414 aa27.6■■■□□ 2.01
VPS28-203ENST00000524521 FKBP8Q14318 412 aa27.6■■■□□ 2.01
VPS28-203ENST00000524521 USPL1Q5W0Q7 1092 aa27.6■■■□□ 2.01
VPS28-203ENST00000524521 COL15A1P39059 1388 aa27.6■■■□□ 2.01
VPS28-203ENST00000524521 RIPK4P57078 832 aa27.59■■■□□ 2.01
VPS28-203ENST00000524521 THUMPD2Q9BTF0 503 aaKnown RBP27.59■■■□□ 2.01
VPS28-203ENST00000524521 CCDC146Q8IYE0 955 aa27.58■■■□□ 2.01
VPS28-203ENST00000524521 NARFQ9UHQ1 456 aa27.58■■■□□ 2.01
VPS28-203ENST00000524521 USP16Q9Y5T5 823 aa27.58■■■□□ 2.01
VPS28-203ENST00000524521 A1BGP04217 495 aa27.57■■■□□ 2
VPS28-203ENST00000524521 SNRPA1P09661 255 aaKnown RBP27.57■■■□□ 2
VPS28-203ENST00000524521 ZNF330Q9Y3S2 320 aaPredicted RBP27.57■■■□□ 2
VPS28-203ENST00000524521 EIF5P55010 431 aaKnown RBP27.56■■■□□ 2
VPS28-203ENST00000524521 PNISRQ8TF01 805 aaKnown RBP27.56■■■□□ 2
VPS28-203ENST00000524521 ADAMTS8Q9UP79 889 aa27.56■■■□□ 2
VPS28-203ENST00000524521 A0A087WZG4 1122 aa27.55■■■□□ 2
VPS28-203ENST00000524521 PRAMEF22A3QJZ6 481 aa27.55■■■□□ 2
VPS28-203ENST00000524521 TMPOP42166 694 aaKnown RBP27.55■■■□□ 2
VPS28-203ENST00000524521 RUNDC1Q96C34 613 aa27.54■■■□□ 2
VPS28-203ENST00000524521 YBX3P16989 372 aaKnown RBP eCLIP27.53■■■□□ 2
VPS28-203ENST00000524521 NEUROD2Q15784 382 aa27.53■■■□□ 2
VPS28-203ENST00000524521 NPM2Q86SE8 214 aaKnown RBP27.53■■■□□ 2
VPS28-203ENST00000524521 RRP7AQ9Y3A4 280 aaKnown RBP27.53■■■□□ 2
VPS28-203ENST00000524521 TM4SF1P30408 202 aa27.52■■■□□ 2
VPS28-203ENST00000524521 IL6STP40189 918 aaPredicted RBP27.52■■■□□ 2
VPS28-203ENST00000524521 DDR1Q08345 913 aa27.52■■■□□ 2
VPS28-203ENST00000524521 WWC3Q9ULE0 1092 aa27.52■■■□□ 2
VPS28-203ENST00000524521 GRIN3BO60391 1043 aa27.5■■□□□ 1.99
VPS28-203ENST00000524521 PIP4K2AP48426 406 aaPredicted RBP27.5■■□□□ 1.99
VPS28-203ENST00000524521 LMOD3Q0VAK6 560 aa27.5■■□□□ 1.99
VPS28-203ENST00000524521 BCL2L12Q9HB09 334 aa27.5■■□□□ 1.99
VPS28-203ENST00000524521 TBC1D2BQ9UPU7 963 aa27.5■■□□□ 1.99
VPS28-203ENST00000524521 TGFB2P61812 414 aa27.49■■□□□ 1.99
VPS28-203ENST00000524521 POLRMTO00411 1230 aaKnown RBP27.48■■□□□ 1.99
VPS28-203ENST00000524521 NFIXQ14938 502 aa27.48■■□□□ 1.99
VPS28-203ENST00000524521 A0A0G2JLW4 131 aa27.47■■□□□ 1.99
VPS28-203ENST00000524521 EIF4A1P60842 406 aaKnown RBP27.47■■□□□ 1.99
VPS28-203ENST00000524521 C10orf71Q711Q0 1435 aa27.47■■□□□ 1.99
VPS28-203ENST00000524521 BICDL1Q6ZP65 573 aa27.45■■□□□ 1.98
VPS28-203ENST00000524521 TSPYL4Q9UJ04 414 aa27.45■■□□□ 1.98
VPS28-203ENST00000524521 KIF13BQ9NQT8 1826 aa27.44■■□□□ 1.98
VPS28-203ENST00000524521 GIGYF1O75420 1035 aaPredicted RBP27.44■■□□□ 1.98
VPS28-203ENST00000524521 DZIP3Q86Y13 1208 aaKnown RBP27.44■■□□□ 1.98
VPS28-203ENST00000524521 CHD4Q14839 1912 aa27.43■■□□□ 1.98
VPS28-203ENST00000524521 KDM3BQ7LBC6 1761 aa27.43■■□□□ 1.98
VPS28-203ENST00000524521 DPEP1P16444 411 aa27.43■■□□□ 1.98
VPS28-203ENST00000524521 PXDNLA1KZ92 1463 aa27.43■■□□□ 1.98
VPS28-203ENST00000524521 NBPF26B4DH59 902 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 ANP32CO43423 234 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 SERPINB2P05120 415 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 CCDC184Q52MB2 194 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 NBPF10Q6P3W6 841 aaKnown RBP27.42■■□□□ 1.98
VPS28-203ENST00000524521 NBPF15Q8N660 670 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 TRIM35Q9UPQ4 493 aa27.42■■□□□ 1.98
VPS28-203ENST00000524521 N4BP2Q86UW6 1770 aaPredicted RBP27.41■■□□□ 1.98
VPS28-203ENST00000524521 CAMTA2O94983 1202 aa27.41■■□□□ 1.98
VPS28-203ENST00000524521 TBC1D9BQ66K14 1250 aa27.41■■□□□ 1.98
VPS28-203ENST00000524521 BABAM1Q9NWV8 329 aa27.4■■□□□ 1.98
VPS28-203ENST00000524521 BCS1LQ9Y276 419 aa27.38■■□□□ 1.97
VPS28-203ENST00000524521 LAS1LQ9Y4W2 734 aaKnown RBP27.38■■□□□ 1.97
VPS28-203ENST00000524521 APAF1O14727 1248 aa27.37■■□□□ 1.97
VPS28-203ENST00000524521 KIAA1551Q9HCM1 1747 aa27.37■■□□□ 1.97
VPS28-203ENST00000524521 KCNA3P22001 575 aa27.36■■□□□ 1.97
VPS28-203ENST00000524521 NGEFQ8N5V2 710 aa27.36■■□□□ 1.97
VPS28-203ENST00000524521 AFDNP55196 1824 aaKnown RBP27.36■■□□□ 1.97
VPS28-203ENST00000524521 CHRNA5P30532 468 aa27.35■■□□□ 1.97
VPS28-203ENST00000524521 SETDB2Q96T68 719 aa27.35■■□□□ 1.97
VPS28-203ENST00000524521 PIM2Q9P1W9 311 aa27.35■■□□□ 1.97
VPS28-203ENST00000524521 UTRNP46939 3433 aa27.34■■□□□ 1.97
VPS28-203ENST00000524521 SCN7AQ01118 1682 aa27.34■■□□□ 1.97
VPS28-203ENST00000524521 LAMB4A4D0S4 1761 aa27.34■■□□□ 1.97
VPS28-203ENST00000524521 CHL1O00533 1208 aa27.33■■□□□ 1.97
VPS28-203ENST00000524521 MYL6BP14649 208 aa27.33■■□□□ 1.97
VPS28-203ENST00000524521 CLEC4GQ6UXB4 293 aa27.33■■□□□ 1.97
VPS28-203ENST00000524521 ZNF784Q8NCA9 323 aaPredicted RBP27.33■■□□□ 1.97
VPS28-203ENST00000524521 ZNF652Q9Y2D9 606 aa27.33■■□□□ 1.97
VPS28-203ENST00000524521 EIF2S2P20042 333 aaKnown RBP27.32■■□□□ 1.96
VPS28-203ENST00000524521 MRS2Q9HD23 443 aa27.32■■□□□ 1.96
VPS28-203ENST00000524521 CARMIL3Q8ND23 1372 aa27.32■■□□□ 1.96
VPS28-203ENST00000524521 NRXN2Q9P2S2 1712 aa27.31■■□□□ 1.96
VPS28-203ENST00000524521 NPHP1O15259 732 aa27.3■■□□□ 1.96
VPS28-203ENST00000524521 DALRD3Q5D0E6 543 aaKnown RBP27.29■■□□□ 1.96
VPS28-203ENST00000524521 PRR5LQ6MZQ0 368 aa27.29■■□□□ 1.96
VPS28-203ENST00000524521 CCDC24Q8N4L8 307 aa27.29■■□□□ 1.96
VPS28-203ENST00000524521 BCORQ6W2J9 1755 aa27.29■■□□□ 1.96
VPS28-203ENST00000524521 ARHGAP27Q6ZUM4 889 aa27.28■■□□□ 1.96
VPS28-203ENST00000524521 GOLGB1Q14789 3259 aaKnown RBP27.27■■□□□ 1.96
VPS28-203ENST00000524521 ERBB4Q15303 1308 aa27.27■■□□□ 1.96
VPS28-203ENST00000524521 HLFQ16534 295 aa27.27■■□□□ 1.96
VPS28-203ENST00000524521 C2CD5Q86YS7 1000 aa27.27■■□□□ 1.96
VPS28-203ENST00000524521 CFAP44Q96MT7 982 aa27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms