RNA–Protein interactions for RNA: ENST00000524126.5

SPIDR-224, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 1 (best)

Gene SPIDR, Length 2,614 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-224ENST00000524126 FER1L4A9Z1Z3 1794 aa12.17□□□□□ -0.46
SPIDR-224ENST00000524126 POLR3GO15318 223 aaPredicted RBP12.16□□□□□ -0.46
SPIDR-224ENST00000524126 FIBPO43427 364 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 DTNBO60941 627 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 MMP14P50281 582 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 NCBP3Q53F19 620 aaKnown RBP12.16□□□□□ -0.46
SPIDR-224ENST00000524126 EP400NLQ6ZTU2 488 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 TULP4Q9NRJ4 1543 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 CUL4AQ13619 759 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 ZSCAN25Q6NSZ9 544 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 KRBA2Q6ZNG9 492 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 LUZP1Q86V48 1076 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 SLC26A8Q96RN1 970 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 ABCC11Q96J66 1382 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 ZFYVE9O95405 1425 aa12.16□□□□□ -0.46
SPIDR-224ENST00000524126 MYO3AQ8NEV4 1616 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 REC8O95072 547 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 TOMM22Q9NS69 142 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 PALD1Q9ULE6 856 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 YTHDC2Q9H6S0 1430 aaKnown RBP12.15□□□□□ -0.46
SPIDR-224ENST00000524126 MED14O60244 1454 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 NRXN3Q9Y4C0 1643 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 TXNDC2Q86VQ3 553 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 KCNG1Q9UIX4 513 aa12.15□□□□□ -0.46
SPIDR-224ENST00000524126 MYO1CO00159 1063 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 TMPOP42166 694 aaKnown RBP12.14□□□□□ -0.47
SPIDR-224ENST00000524126 ST5P78524 1137 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 EXOC6BQ9Y2D4 811 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 FHOD1Q9Y613 1164 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 NCKAP5LQ9HCH0 1330 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 RPAP1Q9BWH6 1393 aaPredicted RBP12.14□□□□□ -0.47
SPIDR-224ENST00000524126 UBR1Q8IWV7 1749 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 APPP05067 770 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 PLA2G4AP47712 749 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 LRRN4CLQ8ND94 238 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 CACTINQ8WUQ7 758 aaKnown RBP12.14□□□□□ -0.47
SPIDR-224ENST00000524126 CFAP53Q96M91 514 aa12.14□□□□□ -0.47
SPIDR-224ENST00000524126 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.14□□□□□ -0.47
SPIDR-224ENST00000524126 UBE2HP62256 183 aa12.13□□□□□ -0.47
SPIDR-224ENST00000524126 CASC1Q6TDU7 716 aa12.13□□□□□ -0.47
SPIDR-224ENST00000524126 UPF3BQ9BZI7 483 aaKnown RBP12.13□□□□□ -0.47
SPIDR-224ENST00000524126 WDR33Q9C0J8 1336 aaKnown RBP12.13□□□□□ -0.47
SPIDR-224ENST00000524126 ARID5BQ14865 1188 aa12.13□□□□□ -0.47
SPIDR-224ENST00000524126 CREBRFQ8IUR6 639 aa12.13□□□□□ -0.47
SPIDR-224ENST00000524126 TMEM87AQ8NBN3 555 aa12.13□□□□□ -0.47
SPIDR-224ENST00000524126 SETD1AO15047 1707 aaKnown RBP12.12□□□□□ -0.47
SPIDR-224ENST00000524126 ERC2O15083 957 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 FAM193AP78312 1265 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 BMS1Q14692 1282 aaKnown RBP12.12□□□□□ -0.47
SPIDR-224ENST00000524126 CCDC144BQ3MJ40 725 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 CCDC144CPQ8IYA2 1237 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 SMARCE1Q969G3 411 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 ERO1AQ96HE7 468 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 CHMP3Q9Y3E7 222 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 ADGRB2O60241 1585 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 PTPRCP08575 1304 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 NUTM2FA1L443 756 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 CCDC191Q8NCU4 936 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 LRRFIP2Q9Y608 721 aaKnown RBP12.12□□□□□ -0.47
SPIDR-224ENST00000524126 TMEM2Q9UHN6 1383 aa12.12□□□□□ -0.47
SPIDR-224ENST00000524126 PNMA6AP0CW24 399 aaPredicted RBP12.11□□□□□ -0.47
SPIDR-224ENST00000524126 CASQ1P31415 396 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 CLCN6P51797 869 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 ERCC6LQ2NKX8 1250 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 ICE2Q659A1 982 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 TRIM5Q9C035 493 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 TRMT1Q9NXH9 659 aaKnown RBP12.11□□□□□ -0.47
SPIDR-224ENST00000524126 RIMS1Q86UR5 1692 aaKnown RBP12.11□□□□□ -0.47
SPIDR-224ENST00000524126 ELL2O00472 640 aaPredicted RBP12.11□□□□□ -0.47
SPIDR-224ENST00000524126 CAMK4Q16566 473 aa12.11□□□□□ -0.47
SPIDR-224ENST00000524126 INTS4Q96HW7 963 aaKnown RBP12.11□□□□□ -0.47
SPIDR-224ENST00000524126 SLFNL1Q499Z3 407 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 GPATCH11Q8N954 259 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 FAM200AQ8TCP9 573 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 CFAP44Q96MT7 982 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 LARP6Q9BRS8 491 aaKnown RBP12.1□□□□□ -0.47
SPIDR-224ENST00000524126 CCDC192P0DO97 292 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 ZNF75DP51815 510 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 ALDH1L2Q3SY69 923 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 MUM1L1Q5H9M0 696 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 PLEKHF1Q96S99 279 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 ZCCHC17Q9NP64 241 aaKnown RBP12.1□□□□□ -0.47
SPIDR-224ENST00000524126 MRVI1Q9Y6F6 885 aa12.1□□□□□ -0.47
SPIDR-224ENST00000524126 SLU7O95391 586 aaKnown RBP12.09□□□□□ -0.47
SPIDR-224ENST00000524126 H2AFXP16104 143 aaPredicted RBP12.09□□□□□ -0.47
SPIDR-224ENST00000524126 PTPN14Q15678 1187 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 SYTL4Q96C24 671 aaPredicted RBP12.09□□□□□ -0.47
SPIDR-224ENST00000524126 RBM33Q96EV2 1170 aaKnown RBP12.09□□□□□ -0.47
SPIDR-224ENST00000524126 DCTPP1Q9H773 170 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 ATG3Q9NT62 314 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 TSHZ3Q63HK5 1081 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 TXLNBQ8N3L3 684 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 MRPL50Q8N5N7 158 aaKnown RBP12.09□□□□□ -0.47
SPIDR-224ENST00000524126 DRC1Q96MC2 740 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 CBX8Q9HC52 389 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 CLIP2Q9UDT6 1046 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 SBNO2Q9Y2G9 1366 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 KNDC1Q76NI1 1749 aa12.09□□□□□ -0.47
SPIDR-224ENST00000524126 MCM2P49736 904 aa12.08□□□□□ -0.47
SPIDR-224ENST00000524126 ZSCAN26Q16670 478 aa12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms