RNA–Protein interactions for RNA: ENST00000524126.5

SPIDR-224, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 1 (best)

Gene SPIDR, Length 2,614 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-224ENST00000524126 NISCHQ9Y2I1 1504 aa19.95■□□□□ 0.78
SPIDR-224ENST00000524126 HRCP23327 699 aa17.44■□□□□ 0.38
SPIDR-224ENST00000524126 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
SPIDR-224ENST00000524126 PPARGC1BQ86YN6 1023 aaKnown RBP17.21■□□□□ 0.35
SPIDR-224ENST00000524126 CCDC180Q9P1Z9 1646 aa17.16■□□□□ 0.34
SPIDR-224ENST00000524126 PCGF6Q9BYE7 350 aa16.95■□□□□ 0.3
SPIDR-224ENST00000524126 DCAF8L2P0C7V8 631 aa16.83■□□□□ 0.28
SPIDR-224ENST00000524126 SCAF1Q9H7N4 1312 aaKnown RBP16.79■□□□□ 0.28
SPIDR-224ENST00000524126 SHROOM4Q9ULL8 1493 aa16.76■□□□□ 0.27
SPIDR-224ENST00000524126 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
SPIDR-224ENST00000524126 MYO15BQ96JP2 1530 aa16.67■□□□□ 0.26
SPIDR-224ENST00000524126 MYT1Q01538 1121 aa16.65■□□□□ 0.26
SPIDR-224ENST00000524126 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
SPIDR-224ENST00000524126 ABCC9O60706 1549 aa16.54■□□□□ 0.24
SPIDR-224ENST00000524126 CHIC1Q5VXU3 224 aa16.37■□□□□ 0.21
SPIDR-224ENST00000524126 DCAF1Q9Y4B6 1507 aa16.27■□□□□ 0.19
SPIDR-224ENST00000524126 TRIM26Q12899 539 aaPredicted RBP16.19■□□□□ 0.18
SPIDR-224ENST00000524126 ACIN1Q9UKV3 1341 aaKnown RBP16.19■□□□□ 0.18
SPIDR-224ENST00000524126 NEUROD1Q13562 356 aa16.18■□□□□ 0.18
SPIDR-224ENST00000524126 SCRIBQ14160 1630 aa16.14■□□□□ 0.17
SPIDR-224ENST00000524126 LOC105371045A0A1W2PR82 267 aa16.13■□□□□ 0.17
SPIDR-224ENST00000524126 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
SPIDR-224ENST00000524126 ZEB1P37275 1124 aaPredicted RBP16.11■□□□□ 0.17
SPIDR-224ENST00000524126 NACADO15069 1562 aa16■□□□□ 0.15
SPIDR-224ENST00000524126 RB1CC1Q8TDY2 1594 aa15.89■□□□□ 0.13
SPIDR-224ENST00000524126 CENPBP07199 599 aaPredicted RBP15.85■□□□□ 0.13
SPIDR-224ENST00000524126 BCL11AQ9H165 835 aa15.76■□□□□ 0.11
SPIDR-224ENST00000524126 UNC13AQ9UPW8 1703 aa15.75■□□□□ 0.11
SPIDR-224ENST00000524126 PABPN1Q86U42 306 aaKnown RBP eCLIP15.74■□□□□ 0.11
SPIDR-224ENST00000524126 DIEXFQ68CQ4 756 aaKnown RBP15.7■□□□□ 0.1
SPIDR-224ENST00000524126 CECR2Q9BXF3 1484 aa15.7■□□□□ 0.1
SPIDR-224ENST00000524126 TTBK1Q5TCY1 1321 aaPredicted RBP15.69■□□□□ 0.1
SPIDR-224ENST00000524126 FAM9AQ8IZU1 332 aaPredicted RBP15.68■□□□□ 0.1
SPIDR-224ENST00000524126 YTHDC1Q96MU7 727 aaKnown RBP15.61■□□□□ 0.09
SPIDR-224ENST00000524126 RSF1Q96T23 1441 aaPredicted RBP15.59■□□□□ 0.09
SPIDR-224ENST00000524126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
SPIDR-224ENST00000524126 BICRAQ9NZM4 1560 aa15.56■□□□□ 0.08
SPIDR-224ENST00000524126 MROH2BQ7Z745 1585 aa15.55■□□□□ 0.08
SPIDR-224ENST00000524126 CCER1Q8TC90 406 aaPredicted RBP15.51■□□□□ 0.07
SPIDR-224ENST00000524126 ANP32EQ9BTT0 268 aa15.47■□□□□ 0.07
SPIDR-224ENST00000524126 WIZO95785 1651 aa15.45■□□□□ 0.06
SPIDR-224ENST00000524126 PRKCSHP14314 528 aaPredicted RBP15.43■□□□□ 0.06
SPIDR-224ENST00000524126 EHMT2Q96KQ7 1210 aa15.42■□□□□ 0.06
SPIDR-224ENST00000524126 TRIM41Q8WV44 630 aa15.39■□□□□ 0.05
SPIDR-224ENST00000524126 CSRNP3Q8WYN3 585 aa15.39■□□□□ 0.05
SPIDR-224ENST00000524126 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.04
SPIDR-224ENST00000524126 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
SPIDR-224ENST00000524126 MIER1Q8N108 512 aa15.3■□□□□ 0.04
SPIDR-224ENST00000524126 TSHZ2Q9NRE2 1034 aa15.28■□□□□ 0.04
SPIDR-224ENST00000524126 ZNF316A6NFI3 1004 aaPredicted RBP15.27■□□□□ 0.04
SPIDR-224ENST00000524126 SUPT16HQ9Y5B9 1047 aaKnown RBP15.23■□□□□ 0.03
SPIDR-224ENST00000524126 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
SPIDR-224ENST00000524126 CCDC88BA6NC98 1476 aa15.08■□□□□ 0
SPIDR-224ENST00000524126 ATAD2BQ9ULI0 1458 aa15.06■□□□□ 0
SPIDR-224ENST00000524126 EIF4G1Q04637 1599 aaKnown RBP15.06■□□□□ 0
SPIDR-224ENST00000524126 SMARCA2P51531 1590 aa15.05■□□□□ 0
SPIDR-224ENST00000524126 PEG3Q9GZU2 1588 aa14.99□□□□□ -0.01
SPIDR-224ENST00000524126 BAZ1BQ9UIG0 1483 aaKnown RBP14.98□□□□□ -0.01
SPIDR-224ENST00000524126 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
SPIDR-224ENST00000524126 DNAJC5BQ9UF47 199 aa14.97□□□□□ -0.01
SPIDR-224ENST00000524126 BCANQ96GW7 911 aa14.95□□□□□ -0.02
SPIDR-224ENST00000524126 ABCC8Q09428 1581 aa14.93□□□□□ -0.02
SPIDR-224ENST00000524126 ERICH6Q7L0X2 663 aa14.89□□□□□ -0.03
SPIDR-224ENST00000524126 RBM19Q9Y4C8 960 aaKnown RBP14.86□□□□□ -0.03
SPIDR-224ENST00000524126 CC2D2AQ9P2K1 1620 aa14.85□□□□□ -0.03
SPIDR-224ENST00000524126 MSH5O43196 834 aa14.83□□□□□ -0.03
SPIDR-224ENST00000524126 NCAPD3P42695 1498 aa14.83□□□□□ -0.04
SPIDR-224ENST00000524126 ANO8Q9HCE9 1232 aaPredicted RBP14.79□□□□□ -0.04
SPIDR-224ENST00000524126 APLP2Q06481 763 aa14.77□□□□□ -0.04
SPIDR-224ENST00000524126 HMGXB3Q12766 1538 aa14.77□□□□□ -0.05
SPIDR-224ENST00000524126 FKBP8Q14318 412 aa14.75□□□□□ -0.05
SPIDR-224ENST00000524126 HNRNPUL2Q1KMD3 747 aaKnown RBP14.72□□□□□ -0.05
SPIDR-224ENST00000524126 ITGAEP38570 1179 aa14.71□□□□□ -0.06
SPIDR-224ENST00000524126 KCNH8Q96L42 1107 aa14.7□□□□□ -0.06
SPIDR-224ENST00000524126 WRNQ14191 1432 aaPredicted RBP eCLIP14.68□□□□□ -0.06
SPIDR-224ENST00000524126 RUSC2Q8N2Y8 1516 aa14.66□□□□□ -0.06
SPIDR-224ENST00000524126 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
SPIDR-224ENST00000524126 SOGA1O94964 1423 aa14.65□□□□□ -0.06
SPIDR-224ENST00000524126 DEKP35659 375 aaKnown RBP14.64□□□□□ -0.07
SPIDR-224ENST00000524126 SALL2Q9Y467 1007 aaPredicted RBP14.61□□□□□ -0.07
SPIDR-224ENST00000524126 CEP162Q5TB80 1403 aa14.6□□□□□ -0.07
SPIDR-224ENST00000524126 NESP48681 1621 aa14.59□□□□□ -0.07
SPIDR-224ENST00000524126 CCDC136Q96JN2 1154 aa14.58□□□□□ -0.08
SPIDR-224ENST00000524126 CFTRP13569 1480 aa14.57□□□□□ -0.08
SPIDR-224ENST00000524126 CADPSQ9ULU8 1353 aa14.53□□□□□ -0.08
SPIDR-224ENST00000524126 NEFLP07196 543 aa14.52□□□□□ -0.08
SPIDR-224ENST00000524126 FANCIQ9NVI1 1328 aa14.52□□□□□ -0.08
SPIDR-224ENST00000524126 CUX1P39880 1505 aa14.49□□□□□ -0.09
SPIDR-224ENST00000524126 TOP2BQ02880 1626 aa14.45□□□□□ -0.1
SPIDR-224ENST00000524126 MYT1LQ9UL68 1186 aa14.45□□□□□ -0.1
SPIDR-224ENST00000524126 DNAJC5Q9H3Z4 198 aa14.44□□□□□ -0.1
SPIDR-224ENST00000524126 NBR1Q14596 966 aa14.42□□□□□ -0.1
SPIDR-224ENST00000524126 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.42□□□□□ -0.1
SPIDR-224ENST00000524126 TRIM52Q96A61 297 aa14.41□□□□□ -0.1
SPIDR-224ENST00000524126 FANCD2Q9BXW9 1451 aa14.41□□□□□ -0.1
SPIDR-224ENST00000524126 PRDM2Q13029 1718 aa14.41□□□□□ -0.1
SPIDR-224ENST00000524126 BIVM-ERCC5R4GMW8 1640 aa14.41□□□□□ -0.1
SPIDR-224ENST00000524126 TNIKQ9UKE5 1360 aa14.4□□□□□ -0.1
SPIDR-224ENST00000524126 RTN4Q9NQC3 1192 aaKnown RBP14.39□□□□□ -0.11
SPIDR-224ENST00000524126 UBTFP17480 764 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms