RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 ARFGEF1Q9Y6D6 1849 aa35.2■■■■□ 3.23
PVT1-219ENST00000523427 NFIXQ14938 502 aa35.19■■■■□ 3.22
PVT1-219ENST00000523427 RBM46Q8TBY0 533 aaKnown RBP35.19■■■■□ 3.22
PVT1-219ENST00000523427 ZBTB1Q9Y2K1 713 aa35.18■■■■□ 3.22
PVT1-219ENST00000523427 MTHFSDQ2M296 383 aaKnown RBP35.17■■■■□ 3.22
PVT1-219ENST00000523427 NARFQ9UHQ1 456 aa35.17■■■■□ 3.22
PVT1-219ENST00000523427 CNGB1Q14028 1251 aaPredicted RBP35.16■■■■□ 3.22
PVT1-219ENST00000523427 CANXP27824 592 aaKnown RBP35.15■■■■□ 3.22
PVT1-219ENST00000523427 RASSF7Q02833 373 aa35.15■■■■□ 3.22
PVT1-219ENST00000523427 COL15A1P39059 1388 aa35.14■■■■□ 3.22
PVT1-219ENST00000523427 CC2D1BQ5T0F9 858 aaKnown RBP35.14■■■■□ 3.22
PVT1-219ENST00000523427 SERPINB2P05120 415 aa35.13■■■■□ 3.21
PVT1-219ENST00000523427 BICDL1Q6ZP65 573 aa35.13■■■■□ 3.21
PVT1-219ENST00000523427 ADAMTS7Q9UKP4 1686 aa35.12■■■■□ 3.21
PVT1-219ENST00000523427 DIAPH1O60610 1272 aaKnown RBP35.11■■■■□ 3.21
PVT1-219ENST00000523427 BCL2L12Q9HB09 334 aa35.11■■■■□ 3.21
PVT1-219ENST00000523427 KIF7Q2M1P5 1343 aa35.1■■■■□ 3.21
PVT1-219ENST00000523427 FSTL1Q12841 308 aa35.08■■■■□ 3.21
PVT1-219ENST00000523427 C2CD5Q86YS7 1000 aa35.08■■■■□ 3.21
PVT1-219ENST00000523427 TTC5Q8N0Z6 440 aa35.07■■■■□ 3.2
PVT1-219ENST00000523427 MRC1P22897 1456 aa35.07■■■■□ 3.2
PVT1-219ENST00000523427 ZNF330Q9Y3S2 320 aaPredicted RBP35.06■■■■□ 3.2
PVT1-219ENST00000523427 TTLL6Q8N841 843 aa35.05■■■■□ 3.2
PVT1-219ENST00000523427 VSIG10Q8N0Z9 540 aa35.04■■■■□ 3.2
PVT1-219ENST00000523427 AFDNP55196 1824 aaKnown RBP35.04■■■■□ 3.2
PVT1-219ENST00000523427 WDR90Q96KV7 1748 aa35.03■■■■□ 3.2
PVT1-219ENST00000523427 H0YIN7 160 aa35.03■■■■□ 3.2
PVT1-219ENST00000523427 U2SURPO15042 1029 aaKnown RBP35.03■■■■□ 3.2
PVT1-219ENST00000523427 STARD3NLO95772 234 aa35.03■■■■□ 3.2
PVT1-219ENST00000523427 LMNB1P20700 586 aa35.03■■■■□ 3.2
PVT1-219ENST00000523427 KLRG1Q96E93 195 aa35.03■■■■□ 3.2
PVT1-219ENST00000523427 SBF1O95248 1867 aa35.02■■■■□ 3.2
PVT1-219ENST00000523427 PRELPP51888 382 aa35.02■■■■□ 3.2
PVT1-219ENST00000523427 CARMIL3Q8ND23 1372 aa35.01■■■■□ 3.2
PVT1-219ENST00000523427 ZNF219Q9P2Y4 722 aaPredicted RBP35.01■■■■□ 3.2
PVT1-219ENST00000523427 VIRMAQ69YN4 1812 aaKnown RBP35■■■■□ 3.19
PVT1-219ENST00000523427 CCDC24Q8N4L8 307 aa35■■■■□ 3.19
PVT1-219ENST00000523427 SMC1BQ8NDV3 1235 aa35■■■■□ 3.19
PVT1-219ENST00000523427 TEFQ10587 303 aa34.99■■■■□ 3.19
PVT1-219ENST00000523427 PER1O15534 1290 aaPredicted RBP34.98■■■■□ 3.19
PVT1-219ENST00000523427 EIF5P55010 431 aaKnown RBP34.98■■■■□ 3.19
PVT1-219ENST00000523427 ZNF622Q969S3 477 aaKnown RBP eCLIP34.98■■■■□ 3.19
PVT1-219ENST00000523427 ZNF496Q96IT1 587 aaPredicted RBP34.98■■■■□ 3.19
PVT1-219ENST00000523427 TBC1D2BQ9UPU7 963 aa34.98■■■■□ 3.19
PVT1-219ENST00000523427 A0A087WZG4 1122 aa34.97■■■■□ 3.19
PVT1-219ENST00000523427 TBC1D9BQ66K14 1250 aa34.97■■■■□ 3.19
PVT1-219ENST00000523427 IL17REQ8NFR9 667 aa34.96■■■■□ 3.19
PVT1-219ENST00000523427 GLTPD2A6NH11 291 aa34.95■■■■□ 3.19
PVT1-219ENST00000523427 VEGFAP15692 232 aaPredicted RBP34.94■■■■□ 3.18
PVT1-219ENST00000523427 TNRC6CQ9HCJ0 1690 aaKnown RBP34.94■■■■□ 3.18
PVT1-219ENST00000523427 NRXN2Q9P2S2 1712 aa34.93■■■■□ 3.18
PVT1-219ENST00000523427 ZC3H4Q9UPT8 1303 aaKnown RBP34.93■■■■□ 3.18
PVT1-219ENST00000523427 GNAT3A8MTJ3 354 aa34.93■■■■□ 3.18
PVT1-219ENST00000523427 NFKBIEO00221 500 aa34.93■■■■□ 3.18
PVT1-219ENST00000523427 ZNF790Q6PG37 636 aa34.93■■■■□ 3.18
PVT1-219ENST00000523427 GAS2L2Q8NHY3 880 aa34.92■■■■□ 3.18
PVT1-219ENST00000523427 HEG1Q9ULI3 1381 aa34.91■■■■□ 3.18
PVT1-219ENST00000523427 NPHP1O15259 732 aa34.9■■■■□ 3.18
PVT1-219ENST00000523427 C21orf2O43822 256 aa34.9■■■■□ 3.18
PVT1-219ENST00000523427 NPM2Q86SE8 214 aaKnown RBP34.9■■■■□ 3.18
PVT1-219ENST00000523427 A1BGP04217 495 aa34.89■■■■□ 3.18
PVT1-219ENST00000523427 JMYQ8N9B5 988 aa34.89■■■■□ 3.18
PVT1-219ENST00000523427 TEX13AQ9BXU3 409 aaPredicted RBP34.89■■■■□ 3.18
PVT1-219ENST00000523427 UBR2Q8IWV8 1755 aa34.89■■■■□ 3.18
PVT1-219ENST00000523427 COL13A1Q5TAT6 717 aaPredicted RBP34.88■■■■□ 3.17
PVT1-219ENST00000523427 PRR5LQ6MZQ0 368 aa34.88■■■■□ 3.17
PVT1-219ENST00000523427 PDE6BP35913 854 aa34.87■■■■□ 3.17
PVT1-219ENST00000523427 BRIP1Q9BX63 1249 aa34.87■■■■□ 3.17
PVT1-219ENST00000523427 DLEC1Q9Y238 1755 aa34.87■■■■□ 3.17
PVT1-219ENST00000523427 FMNL2Q96PY5 1086 aa34.86■■■■□ 3.17
PVT1-219ENST00000523427 KCNQ3O43525 872 aa34.85■■■■□ 3.17
PVT1-219ENST00000523427 IL6STP40189 918 aaPredicted RBP34.85■■■■□ 3.17
PVT1-219ENST00000523427 DPY19L2Q6NUT2 758 aa34.84■■■■□ 3.17
PVT1-219ENST00000523427 CCDC88AQ3V6T2 1871 aa34.84■■■■□ 3.17
PVT1-219ENST00000523427 ERFEQ4G0M1 354 aa34.83■■■■□ 3.17
PVT1-219ENST00000523427 SETDB2Q96T68 719 aa34.83■■■■□ 3.17
PVT1-219ENST00000523427 COL3A1P02461 1466 aaPredicted RBP34.83■■■■□ 3.17
PVT1-219ENST00000523427 PIP4K2AP48426 406 aaPredicted RBP34.82■■■■□ 3.16
PVT1-219ENST00000523427 BTBD11A6QL63 1104 aa34.81■■■■□ 3.16
PVT1-219ENST00000523427 CNBD1Q8NA66 436 aa34.81■■■■□ 3.16
PVT1-219ENST00000523427 PHACTR3Q96KR7 559 aa34.81■■■■□ 3.16
PVT1-219ENST00000523427 CAPN15O75808 1086 aa34.8■■■■□ 3.16
PVT1-219ENST00000523427 PDZRN3Q9UPQ7 1066 aa34.8■■■■□ 3.16
PVT1-219ENST00000523427 TIAM2Q8IVF5 1701 aa34.8■■■■□ 3.16
PVT1-219ENST00000523427 POTECB2RU33 542 aa34.79■■■■□ 3.16
PVT1-219ENST00000523427 CAMTA2O94983 1202 aa34.79■■■■□ 3.16
PVT1-219ENST00000523427 PRKAR2BP31323 418 aa34.79■■■■□ 3.16
PVT1-219ENST00000523427 ANKRD31Q8N7Z5 1873 aa34.79■■■■□ 3.16
PVT1-219ENST00000523427 DZIP3Q86Y13 1208 aaKnown RBP34.78■■■■□ 3.16
PVT1-219ENST00000523427 ST5P78524 1137 aa34.77■■■■□ 3.16
PVT1-219ENST00000523427 TAOK3Q9H2K8 898 aa34.76■■■■□ 3.16
PVT1-219ENST00000523427 USP16Q9Y5T5 823 aa34.76■■■■□ 3.16
PVT1-219ENST00000523427 SCN7AQ01118 1682 aa34.75■■■■□ 3.15
PVT1-219ENST00000523427 PRAMEF22A3QJZ6 481 aa34.74■■■■□ 3.15
PVT1-219ENST00000523427 CNKSR1Q969H4 720 aa34.74■■■■□ 3.15
PVT1-219ENST00000523427 COL11A2P13942 1736 aaPredicted RBP34.73■■■■□ 3.15
PVT1-219ENST00000523427 PRPF40BQ6NWY9 871 aaKnown RBP34.73■■■■□ 3.15
PVT1-219ENST00000523427 CFAP53Q96M91 514 aa34.73■■■■□ 3.15
PVT1-219ENST00000523427 NPC1L1Q9UHC9 1359 aa34.73■■■■□ 3.15
PVT1-219ENST00000523427 TNS4Q8IZW8 715 aa34.72■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms