RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 KCNQ4P56696 695 aa12.43□□□□□ -0.42
CLK4-209ENST00000521621 SLC39A6Q13433 755 aa12.43□□□□□ -0.42
CLK4-209ENST00000521621 DNAJC10Q8IXB1 793 aa12.43□□□□□ -0.42
CLK4-209ENST00000521621 KIAA1551Q9HCM1 1747 aa12.43□□□□□ -0.42
CLK4-209ENST00000521621 PTCD1O75127 700 aaKnown RBP12.42□□□□□ -0.42
CLK4-209ENST00000521621 POLD1P28340 1107 aa12.42□□□□□ -0.42
CLK4-209ENST00000521621 EIF5P55010 431 aaKnown RBP12.42□□□□□ -0.42
CLK4-209ENST00000521621 EIF4A1P60842 406 aaKnown RBP12.42□□□□□ -0.42
CLK4-209ENST00000521621 PDGFDQ9GZP0 370 aaPredicted RBP12.42□□□□□ -0.42
CLK4-209ENST00000521621 NLGN1Q8N2Q7 840 aa12.42□□□□□ -0.42
CLK4-209ENST00000521621 USP42Q9H9J4 1324 aaKnown RBP12.42□□□□□ -0.42
CLK4-209ENST00000521621 COL15A1P39059 1388 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 CCDC184Q52MB2 194 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 AMIGO3Q86WK7 504 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 MRS2Q9HD23 443 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 ARHGEF1Q92888 912 aaKnown RBP12.41□□□□□ -0.42
CLK4-209ENST00000521621 CFAP44Q96MT7 982 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 IFT57Q9NWB7 429 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 DCTN1Q14203 1278 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 NARFQ9UHQ1 456 aa12.41□□□□□ -0.42
CLK4-209ENST00000521621 GIGYF1O75420 1035 aaPredicted RBP12.4□□□□□ -0.42
CLK4-209ENST00000521621 ARXQ96QS3 562 aa12.4□□□□□ -0.42
CLK4-209ENST00000521621 ZBTB7AO95365 584 aa12.4□□□□□ -0.43
CLK4-209ENST00000521621 CD2APQ9Y5K6 639 aa12.4□□□□□ -0.43
CLK4-209ENST00000521621 CHMP4AQ9BY43 222 aa12.39□□□□□ -0.43
CLK4-209ENST00000521621 C10orf71Q711Q0 1435 aa12.39□□□□□ -0.43
CLK4-209ENST00000521621 KCNQ3O43525 872 aa12.39□□□□□ -0.43
CLK4-209ENST00000521621 GYS1P13807 737 aa12.39□□□□□ -0.43
CLK4-209ENST00000521621 CCDC146Q8IYE0 955 aa12.39□□□□□ -0.43
CLK4-209ENST00000521621 DLEC1Q9Y238 1755 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 APAF1O14727 1248 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 TM4SF1P30408 202 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 RFC4P35249 363 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 GNAI1P63096 354 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 WDR63Q8IWG1 891 aa12.38□□□□□ -0.43
CLK4-209ENST00000521621 ZBTB1Q9Y2K1 713 aa12.37□□□□□ -0.43
CLK4-209ENST00000521621 CLEC4GQ6UXB4 293 aa12.37□□□□□ -0.43
CLK4-209ENST00000521621 TSPYL4Q9UJ04 414 aa12.37□□□□□ -0.43
CLK4-209ENST00000521621 ATF5Q9Y2D1 282 aaPredicted RBP12.36□□□□□ -0.43
CLK4-209ENST00000521621 IBTKQ9P2D0 1353 aaPredicted RBP12.36□□□□□ -0.43
CLK4-209ENST00000521621 AFDNP55196 1824 aaKnown RBP12.36□□□□□ -0.43
CLK4-209ENST00000521621 BRCA1P38398 1863 aaKnown RBP12.36□□□□□ -0.43
CLK4-209ENST00000521621 USP16Q9Y5T5 823 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 RIC1Q4ADV7 1423 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 ANKRD36CQ5JPF3 1778 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 ERVV-1B6SEH8 477 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 PPP1R1BQ9UD71 204 aaPredicted RBP12.35□□□□□ -0.43
CLK4-209ENST00000521621 WWC1Q8IX03 1113 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
CLK4-209ENST00000521621 BCL2L12Q9HB09 334 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 ATP10DQ9P241 1426 aa12.35□□□□□ -0.43
CLK4-209ENST00000521621 ZNF521Q96K83 1311 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 ZPR1O75312 459 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 PHF14O94880 888 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 LRP10Q7Z4F1 713 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 PDZRN3Q9UPQ7 1066 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 NBPF26B4DH59 902 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 NBPF10Q6P3W6 841 aaKnown RBP12.34□□□□□ -0.43
CLK4-209ENST00000521621 NBPF15Q8N660 670 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 SYT17Q9BSW7 474 aa12.34□□□□□ -0.43
CLK4-209ENST00000521621 ARFGEF2Q9Y6D5 1785 aa12.33□□□□□ -0.44
CLK4-209ENST00000521621 CAMTA2O94983 1202 aa12.33□□□□□ -0.44
CLK4-209ENST00000521621 TGFB2P61812 414 aa12.33□□□□□ -0.44
CLK4-209ENST00000521621 RRP7AQ9Y3A4 280 aaKnown RBP12.33□□□□□ -0.44
CLK4-209ENST00000521621 CACNA1FO60840 1977 aa12.33□□□□□ -0.44
CLK4-209ENST00000521621 NUP98P52948 1817 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 FHDC1Q9C0D6 1143 aaPredicted RBP12.32□□□□□ -0.44
CLK4-209ENST00000521621 MBIPQ9NS73 344 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 ARFGEF1Q9Y6D6 1849 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 POLRMTO00411 1230 aaKnown RBP12.32□□□□□ -0.44
CLK4-209ENST00000521621 MSH5O43196 834 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 A1BGP04217 495 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 PDIA6Q15084 440 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 MIS18AQ9NYP9 233 aa12.32□□□□□ -0.44
CLK4-209ENST00000521621 ZNF652Q9Y2D9 606 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 PARP3Q9Y6F1 533 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 CARMIL3Q8ND23 1372 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 MMP10P09238 476 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 USPL1Q5W0Q7 1092 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 PXDNLA1KZ92 1463 aa12.31□□□□□ -0.44
CLK4-209ENST00000521621 PRAMEF22A3QJZ6 481 aa12.3□□□□□ -0.44
CLK4-209ENST00000521621 CANXP27824 592 aaKnown RBP12.3□□□□□ -0.44
CLK4-209ENST00000521621 FKBP8Q14318 412 aa12.3□□□□□ -0.44
CLK4-209ENST00000521621 DDX21Q9NR30 783 aaKnown RBP eCLIP12.3□□□□□ -0.44
CLK4-209ENST00000521621 RNF123Q5XPI4 1314 aa12.3□□□□□ -0.44
CLK4-209ENST00000521621 DDR1Q08345 913 aa12.3□□□□□ -0.44
CLK4-209ENST00000521621 DZIP3Q86Y13 1208 aaKnown RBP12.3□□□□□ -0.44
CLK4-209ENST00000521621 SRP68Q9UHB9 627 aaKnown RBP12.3□□□□□ -0.44
CLK4-209ENST00000521621 ANKRD31Q8N7Z5 1873 aa12.29□□□□□ -0.44
CLK4-209ENST00000521621 MAP3K15Q6ZN16 1313 aa12.29□□□□□ -0.44
CLK4-209ENST00000521621 NFIXQ14938 502 aa12.29□□□□□ -0.44
CLK4-209ENST00000521621 NEUROD2Q15784 382 aa12.29□□□□□ -0.44
CLK4-209ENST00000521621 DIEXFQ68CQ4 756 aaKnown RBP12.28□□□□□ -0.44
CLK4-209ENST00000521621 MSL1Q68DK7 614 aa12.28□□□□□ -0.44
CLK4-209ENST00000521621 LAMB2P55268 1798 aa12.28□□□□□ -0.44
CLK4-209ENST00000521621 SMIM5Q71RC9 77 aa12.28□□□□□ -0.44
CLK4-209ENST00000521621 NPM2Q86SE8 214 aaKnown RBP12.28□□□□□ -0.44
CLK4-209ENST00000521621 HYPKQ9NX55 129 aa12.28□□□□□ -0.44
CLK4-209ENST00000521621 DBF4Q9UBU7 674 aaPredicted RBP12.28□□□□□ -0.44
CLK4-209ENST00000521621 KLRG2A4D1S0 409 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms