RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 NRXN2Q9P2S2 1712 aa13.95□□□□□ -0.18
HMGXB3-205ENST00000514469 USPL1Q5W0Q7 1092 aa13.94□□□□□ -0.18
HMGXB3-205ENST00000514469 FMNL2Q96PY5 1086 aa13.94□□□□□ -0.18
HMGXB3-205ENST00000514469 NARFQ9UHQ1 456 aa13.94□□□□□ -0.18
HMGXB3-205ENST00000514469 ADCY9O60503 1353 aa13.94□□□□□ -0.18
HMGXB3-205ENST00000514469 BRCA1P38398 1863 aaKnown RBP13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 BTBD11A6QL63 1104 aa13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 POLRMTO00411 1230 aaKnown RBP13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 HTATSF1O43719 755 aaKnown RBP13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 ZPR1O75312 459 aa13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 STARD3NLO95772 234 aa13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 TM4SF1P30408 202 aa13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 MCM10Q7L590 875 aa13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 RTF1Q92541 710 aaKnown RBP13.93□□□□□ -0.18
HMGXB3-205ENST00000514469 KCNQ3O43525 872 aa13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 CANXP27824 592 aaKnown RBP13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 EIF5P55010 431 aaKnown RBP13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 RALBP1Q15311 655 aa13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 PLEKHF1Q96S99 279 aa13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 TEX13AQ9BXU3 409 aaPredicted RBP13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 BCL2L12Q9HB09 334 aa13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 WWC3Q9ULE0 1092 aa13.92□□□□□ -0.18
HMGXB3-205ENST00000514469 DPEP1P16444 411 aa13.91□□□□□ -0.18
HMGXB3-205ENST00000514469 BCORQ6W2J9 1755 aa13.91□□□□□ -0.18
HMGXB3-205ENST00000514469 ATP10DQ9P241 1426 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 A0A087WZG4 1122 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 A0A0G2JLW4 131 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 DCTN1Q14203 1278 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 NFIXQ14938 502 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 KDM3BQ7LBC6 1761 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 DLG5Q8TDM6 1919 aa13.9□□□□□ -0.18
HMGXB3-205ENST00000514469 LAMB4A4D0S4 1761 aa13.89□□□□□ -0.19
HMGXB3-205ENST00000514469 KCNA3P22001 575 aa13.89□□□□□ -0.19
HMGXB3-205ENST00000514469 IL6STP40189 918 aaPredicted RBP13.89□□□□□ -0.19
HMGXB3-205ENST00000514469 AFDNP55196 1824 aaKnown RBP13.89□□□□□ -0.19
HMGXB3-205ENST00000514469 NEFMP07197 916 aa13.88□□□□□ -0.19
HMGXB3-205ENST00000514469 DDX10Q13206 875 aaKnown RBP13.88□□□□□ -0.19
HMGXB3-205ENST00000514469 NFE2L2Q16236 605 aa13.88□□□□□ -0.19
HMGXB3-205ENST00000514469 BCS1LQ9Y276 419 aa13.88□□□□□ -0.19
HMGXB3-205ENST00000514469 MYBBP1AQ9BQG0 1328 aaKnown RBP13.88□□□□□ -0.19
HMGXB3-205ENST00000514469 ARFGEF1Q9Y6D6 1849 aa13.87□□□□□ -0.19
HMGXB3-205ENST00000514469 DLEC1Q9Y238 1755 aa13.87□□□□□ -0.19
HMGXB3-205ENST00000514469 PRAMEF22A3QJZ6 481 aa13.87□□□□□ -0.19
HMGXB3-205ENST00000514469 A1BGP04217 495 aa13.87□□□□□ -0.19
HMGXB3-205ENST00000514469 MAPK8IP3Q9UPT6 1336 aa13.87□□□□□ -0.19
HMGXB3-205ENST00000514469 CARMIL3Q8ND23 1372 aa13.86□□□□□ -0.19
HMGXB3-205ENST00000514469 SNRPA1P09661 255 aaKnown RBP13.86□□□□□ -0.19
HMGXB3-205ENST00000514469 TAF7Q15545 349 aaPredicted RBP13.86□□□□□ -0.19
HMGXB3-205ENST00000514469 PNNQ9H307 717 aaKnown RBP13.86□□□□□ -0.19
HMGXB3-205ENST00000514469 USP16Q9Y5T5 823 aa13.86□□□□□ -0.19
HMGXB3-205ENST00000514469 SERPINB2P05120 415 aa13.85□□□□□ -0.19
HMGXB3-205ENST00000514469 CHRNA5P30532 468 aa13.85□□□□□ -0.19
HMGXB3-205ENST00000514469 PIM2Q9P1W9 311 aa13.85□□□□□ -0.19
HMGXB3-205ENST00000514469 ZNF330Q9Y3S2 320 aaPredicted RBP13.85□□□□□ -0.19
HMGXB3-205ENST00000514469 GIGYF1O75420 1035 aaPredicted RBP13.84□□□□□ -0.19
HMGXB3-205ENST00000514469 CAMTA2O94983 1202 aa13.84□□□□□ -0.19
HMGXB3-205ENST00000514469 TBC1D9BQ66K14 1250 aa13.84□□□□□ -0.19
HMGXB3-205ENST00000514469 PNISRQ8TF01 805 aaKnown RBP13.84□□□□□ -0.19
HMGXB3-205ENST00000514469 TBC1D2BQ9UPU7 963 aa13.84□□□□□ -0.19
HMGXB3-205ENST00000514469 PIP4K2AP48426 406 aaPredicted RBP13.83□□□□□ -0.2
HMGXB3-205ENST00000514469 C1QTNF8P60827 252 aa13.83□□□□□ -0.2
HMGXB3-205ENST00000514469 DALRD3Q5D0E6 543 aaKnown RBP13.83□□□□□ -0.2
HMGXB3-205ENST00000514469 THUMPD2Q9BTF0 503 aaKnown RBP13.83□□□□□ -0.2
HMGXB3-205ENST00000514469 MIS18AQ9NYP9 233 aa13.83□□□□□ -0.2
HMGXB3-205ENST00000514469 ANKRD31Q8N7Z5 1873 aa13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 COL11A2P13942 1736 aaPredicted RBP13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 NBPF26B4DH59 902 aa13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 NBPF10Q6P3W6 841 aaKnown RBP13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 BICDL1Q6ZP65 573 aa13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 NPM2Q86SE8 214 aaKnown RBP13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 DZIP3Q86Y13 1208 aaKnown RBP13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 NBPF15Q8N660 670 aa13.82□□□□□ -0.2
HMGXB3-205ENST00000514469 ARHGAP27Q6ZUM4 889 aa13.81□□□□□ -0.2
HMGXB3-205ENST00000514469 RGL2O15211 777 aa13.8□□□□□ -0.2
HMGXB3-205ENST00000514469 EIF4A1P60842 406 aaKnown RBP13.8□□□□□ -0.2
HMGXB3-205ENST00000514469 PRR5LQ6MZQ0 368 aa13.8□□□□□ -0.2
HMGXB3-205ENST00000514469 GPBP1L1Q9HC44 474 aaPredicted RBP13.8□□□□□ -0.2
HMGXB3-205ENST00000514469 CLEC4GQ6UXB4 293 aa13.79□□□□□ -0.2
HMGXB3-205ENST00000514469 C2CD5Q86YS7 1000 aa13.79□□□□□ -0.2
HMGXB3-205ENST00000514469 SETDB2Q96T68 719 aa13.79□□□□□ -0.2
HMGXB3-205ENST00000514469 PRKRIP1Q9H875 184 aaPredicted RBP13.79□□□□□ -0.2
HMGXB3-205ENST00000514469 TMPOP42166 694 aaKnown RBP13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 RIPK4P57078 832 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 LMOD3Q0VAK6 560 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 CNBD1Q8NA66 436 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 ZNF526Q8TF50 670 aaPredicted RBP13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 BRIP1Q9BX63 1249 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 PDZRN3Q9UPQ7 1066 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 ZNF652Q9Y2D9 606 aa13.78□□□□□ -0.2
HMGXB3-205ENST00000514469 H0YIN7 160 aa13.77□□□□□ -0.21
HMGXB3-205ENST00000514469 PDE6BP35913 854 aa13.77□□□□□ -0.21
HMGXB3-205ENST00000514469 BABAM1Q9NWV8 329 aa13.77□□□□□ -0.21
HMGXB3-205ENST00000514469 TSPYL4Q9UJ04 414 aa13.77□□□□□ -0.21
HMGXB3-205ENST00000514469 ARFGEF2Q9Y6D5 1785 aa13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 ST5P78524 1137 aa13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 WDR43Q15061 677 aaKnown RBP eCLIP13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 C9orf131Q5VYM1 1079 aa13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 CCDC146Q8IYE0 955 aa13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 CCDC24Q8N4L8 307 aa13.76□□□□□ -0.21
HMGXB3-205ENST00000514469 TTLL6Q8N841 843 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 507.4 ms