RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CRKLP46109 303 aaKnown RBP19.34■□□□□ 0.69
NUP54-213ENST00000513352 C8orf58Q8NAV2 365 aa19.34■□□□□ 0.69
NUP54-213ENST00000513352 USP16Q9Y5T5 823 aa19.34■□□□□ 0.69
NUP54-213ENST00000513352 CYP19A1P11511 503 aaPredicted RBP19.33■□□□□ 0.68
NUP54-213ENST00000513352 NBPF14Q5TI25 921 aa19.33■□□□□ 0.68
NUP54-213ENST00000513352 STK32BQ9NY57 414 aa19.33■□□□□ 0.68
NUP54-213ENST00000513352 TWISTNBQ3B726 338 aaPredicted RBP19.32■□□□□ 0.68
NUP54-213ENST00000513352 TSPYL6Q8N831 410 aa19.32■□□□□ 0.68
NUP54-213ENST00000513352 ANO8Q9HCE9 1232 aaPredicted RBP19.32■□□□□ 0.68
NUP54-213ENST00000513352 CCDC87Q9NVE4 849 aa19.32■□□□□ 0.68
NUP54-213ENST00000513352 MYH14Q7Z406 1995 aaKnown RBP19.32■□□□□ 0.68
NUP54-213ENST00000513352 GNPATO15228 680 aa19.31■□□□□ 0.68
NUP54-213ENST00000513352 ZNF827Q17R98 1081 aa19.31■□□□□ 0.68
NUP54-213ENST00000513352 HDGFL1Q5TGJ6 251 aa19.31■□□□□ 0.68
NUP54-213ENST00000513352 ZNF330Q9Y3S2 320 aaPredicted RBP19.31■□□□□ 0.68
NUP54-213ENST00000513352 CNTNAP4Q9C0A0 1308 aa19.3■□□□□ 0.68
NUP54-213ENST00000513352 PHF14O94880 888 aa19.3■□□□□ 0.68
NUP54-213ENST00000513352 A1BGP04217 495 aa19.3■□□□□ 0.68
NUP54-213ENST00000513352 HOXB7P09629 217 aa19.3■□□□□ 0.68
NUP54-213ENST00000513352 CANXP27824 592 aaKnown RBP19.3■□□□□ 0.68
NUP54-213ENST00000513352 PIP4K2AP48426 406 aaPredicted RBP19.3■□□□□ 0.68
NUP54-213ENST00000513352 TFCP2L1Q9NZI6 479 aa19.3■□□□□ 0.68
NUP54-213ENST00000513352 ZBTB1Q9Y2K1 713 aa19.29■□□□□ 0.68
NUP54-213ENST00000513352 TUBGCP6Q96RT7 1819 aa19.29■□□□□ 0.68
NUP54-213ENST00000513352 RC3H1Q5TC82 1133 aaKnown RBP19.28■□□□□ 0.68
NUP54-213ENST00000513352 INTS5Q6P9B9 1019 aaKnown RBP19.28■□□□□ 0.68
NUP54-213ENST00000513352 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
NUP54-213ENST00000513352 TRMT2AQ8IZ69 625 aaKnown RBP19.28■□□□□ 0.68
NUP54-213ENST00000513352 AKT1S1Q96B36 256 aa19.28■□□□□ 0.68
NUP54-213ENST00000513352 UBR3Q6ZT12 1888 aa19.28■□□□□ 0.68
NUP54-213ENST00000513352 SOS1Q07889 1333 aaPredicted RBP19.27■□□□□ 0.68
NUP54-213ENST00000513352 MSH5O43196 834 aa19.27■□□□□ 0.68
NUP54-213ENST00000513352 MYL6BP14649 208 aa19.27■□□□□ 0.68
NUP54-213ENST00000513352 SLC15A2Q16348 729 aa19.27■□□□□ 0.68
NUP54-213ENST00000513352 RTCBQ9Y3I0 505 aaKnown RBP19.27■□□□□ 0.68
NUP54-213ENST00000513352 TCERG1O14776 1098 aaKnown RBP19.26■□□□□ 0.67
NUP54-213ENST00000513352 CCDC30Q5VVM6 783 aa19.26■□□□□ 0.67
NUP54-213ENST00000513352 SMIM5Q71RC9 77 aa19.26■□□□□ 0.67
NUP54-213ENST00000513352 ARXQ96QS3 562 aa19.26■□□□□ 0.67
NUP54-213ENST00000513352 CHMP4AQ9BY43 222 aa19.26■□□□□ 0.67
NUP54-213ENST00000513352 RPS6KA4O75676 772 aa19.25■□□□□ 0.67
NUP54-213ENST00000513352 STK31Q9BXU1 1019 aa19.25■□□□□ 0.67
NUP54-213ENST00000513352 CHPF2Q9P2E5 772 aa19.25■□□□□ 0.67
NUP54-213ENST00000513352 VAMP4O75379 141 aa19.24■□□□□ 0.67
NUP54-213ENST00000513352 ANXA1P04083 346 aa19.24■□□□□ 0.67
NUP54-213ENST00000513352 R3HDM1Q15032 1099 aaKnown RBP19.24■□□□□ 0.67
NUP54-213ENST00000513352 ERBB4Q15303 1308 aa19.24■□□□□ 0.67
NUP54-213ENST00000513352 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.23■□□□□ 0.67
NUP54-213ENST00000513352 PSDA5PKW4 1024 aaPredicted RBP19.23■□□□□ 0.67
NUP54-213ENST00000513352 AMIGO3Q86WK7 504 aa19.23■□□□□ 0.67
NUP54-213ENST00000513352 DBF4Q9UBU7 674 aaPredicted RBP19.23■□□□□ 0.67
NUP54-213ENST00000513352 COL15A1P39059 1388 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 NBPF26B4DH59 902 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 SSFA2P28290 1259 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 PROSER3Q2NL68 480 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 NBPF10Q6P3W6 841 aaKnown RBP19.22■□□□□ 0.67
NUP54-213ENST00000513352 NBPF15Q8N660 670 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 DDX21Q9NR30 783 aaKnown RBP eCLIP19.22■□□□□ 0.67
NUP54-213ENST00000513352 QSER1Q2KHR3 1735 aa19.22■□□□□ 0.67
NUP54-213ENST00000513352 IL6STP40189 918 aaPredicted RBP19.21■□□□□ 0.67
NUP54-213ENST00000513352 TRAPPC3LQ5T215 181 aa19.21■□□□□ 0.67
NUP54-213ENST00000513352 FLAD1Q8NFF5 587 aa19.21■□□□□ 0.67
NUP54-213ENST00000513352 PNPLA7Q6ZV29 1317 aa19.21■□□□□ 0.67
NUP54-213ENST00000513352 C4AP0C0L4 1744 aa19.2■□□□□ 0.66
NUP54-213ENST00000513352 ADRA2BP18089 450 aa19.2■□□□□ 0.66
NUP54-213ENST00000513352 RFC4P35249 363 aa19.2■□□□□ 0.66
NUP54-213ENST00000513352 AIMP1Q12904 312 aaKnown RBP19.2■□□□□ 0.66
NUP54-213ENST00000513352 A0A087WZG4 1122 aa19.19■□□□□ 0.66
NUP54-213ENST00000513352 CT47B1P0C2W7 299 aaPredicted RBP19.19■□□□□ 0.66
NUP54-213ENST00000513352 EIF5P55010 431 aaKnown RBP19.19■□□□□ 0.66
NUP54-213ENST00000513352 PDIA6Q15084 440 aa19.19■□□□□ 0.66
NUP54-213ENST00000513352 ARHGEF1Q92888 912 aaKnown RBP19.19■□□□□ 0.66
NUP54-213ENST00000513352 BCL2L13Q9BXK5 485 aa19.19■□□□□ 0.66
NUP54-213ENST00000513352 HYPKQ9NX55 129 aa19.19■□□□□ 0.66
NUP54-213ENST00000513352 CACNA1FO60840 1977 aa19.19■□□□□ 0.66
NUP54-213ENST00000513352 SLC4A2P04920 1241 aa19.18■□□□□ 0.66
NUP54-213ENST00000513352 DZIP3Q86Y13 1208 aaKnown RBP19.18■□□□□ 0.66
NUP54-213ENST00000513352 COL23A1Q86Y22 540 aaPredicted RBP19.18■□□□□ 0.66
NUP54-213ENST00000513352 SMC4Q9NTJ3 1288 aa19.18■□□□□ 0.66
NUP54-213ENST00000513352 TBC1D2BQ9UPU7 963 aa19.18■□□□□ 0.66
NUP54-213ENST00000513352 ZPR1O75312 459 aa19.17■□□□□ 0.66
NUP54-213ENST00000513352 KIF6Q6ZMV9 814 aa19.17■□□□□ 0.66
NUP54-213ENST00000513352 XAGE3Q8WTP9 111 aa19.17■□□□□ 0.66
NUP54-213ENST00000513352 COPS6Q7L5N1 327 aa19.16■□□□□ 0.66
NUP54-213ENST00000513352 ZNF428Q96B54 188 aa19.16■□□□□ 0.66
NUP54-213ENST00000513352 PHAXQ9H814 394 aaKnown RBP19.16■□□□□ 0.66
NUP54-213ENST00000513352 SRP68Q9UHB9 627 aaKnown RBP19.16■□□□□ 0.66
NUP54-213ENST00000513352 TTLL7Q6ZT98 887 aa19.15■□□□□ 0.66
NUP54-213ENST00000513352 SSH1Q8WYL5 1049 aa19.15■□□□□ 0.66
NUP54-213ENST00000513352 PDGFDQ9GZP0 370 aaPredicted RBP19.15■□□□□ 0.66
NUP54-213ENST00000513352 ALDH1L2Q3SY69 923 aa19.14■□□□□ 0.65
NUP54-213ENST00000513352 USPL1Q5W0Q7 1092 aa19.14■□□□□ 0.65
NUP54-213ENST00000513352 ZBTB3Q9H5J0 574 aa19.14■□□□□ 0.65
NUP54-213ENST00000513352 SCN7AQ01118 1682 aa19.14■□□□□ 0.65
NUP54-213ENST00000513352 RARSP54136 660 aaKnown RBP19.13■□□□□ 0.65
NUP54-213ENST00000513352 MSL1Q68DK7 614 aa19.13■□□□□ 0.65
NUP54-213ENST00000513352 LRP10Q7Z4F1 713 aa19.13■□□□□ 0.65
NUP54-213ENST00000513352 NARFQ9UHQ1 456 aa19.13■□□□□ 0.65
NUP54-213ENST00000513352 USP42Q9H9J4 1324 aaKnown RBP19.13■□□□□ 0.65
NUP54-213ENST00000513352 BCORQ6W2J9 1755 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms