RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 THSD7AQ9UPZ6 1657 aa20.1■□□□□ 0.81
SQSTM1-213ENST00000510187 EIF4A1P60842 406 aaKnown RBP20.08■□□□□ 0.81
SQSTM1-213ENST00000510187 SLC39A6Q13433 755 aa20.08■□□□□ 0.81
SQSTM1-213ENST00000510187 ZNF790Q6PG37 636 aa20.08■□□□□ 0.81
SQSTM1-213ENST00000510187 TMOD3Q9NYL9 352 aa20.08■□□□□ 0.81
SQSTM1-213ENST00000510187 KDM3BQ7LBC6 1761 aa20.08■□□□□ 0.8
SQSTM1-213ENST00000510187 SEPT12Q8IYM1 358 aa20.07■□□□□ 0.8
SQSTM1-213ENST00000510187 TOGARAM1Q9Y4F4 1720 aa20.07■□□□□ 0.8
SQSTM1-213ENST00000510187 TTC5Q8N0Z6 440 aa20.06■□□□□ 0.8
SQSTM1-213ENST00000510187 RBM6P78332 1123 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-213ENST00000510187 SYTL4Q96C24 671 aaPredicted RBP20.05■□□□□ 0.8
SQSTM1-213ENST00000510187 NUCB1Q02818 461 aa20.05■□□□□ 0.8
SQSTM1-213ENST00000510187 MRPL50Q8N5N7 158 aaKnown RBP20.05■□□□□ 0.8
SQSTM1-213ENST00000510187 FRAT2O75474 233 aaPredicted RBP20.04■□□□□ 0.8
SQSTM1-213ENST00000510187 PRIM1P49642 420 aaKnown RBP20.04■□□□□ 0.8
SQSTM1-213ENST00000510187 PIGBQ92521 554 aa20.04■□□□□ 0.8
SQSTM1-213ENST00000510187 ACSBG1Q96GR2 724 aa20.03■□□□□ 0.8
SQSTM1-213ENST00000510187 SOS1Q07889 1333 aaPredicted RBP20.03■□□□□ 0.8
SQSTM1-213ENST00000510187 ANTXR1Q9H6X2 564 aa20.02■□□□□ 0.8
SQSTM1-213ENST00000510187 ZNF496Q96IT1 587 aaPredicted RBP20.02■□□□□ 0.79
SQSTM1-213ENST00000510187 RGS17Q9UGC6 210 aaPredicted RBP20.02■□□□□ 0.79
SQSTM1-213ENST00000510187 ABCC4O15439 1325 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 BCL9O00512 1426 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 DOT1LQ8TEK3 1739 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 HOXB7P09629 217 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 GCC1Q96CN9 775 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 FMNL2Q96PY5 1086 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 TBC1D2Q9BYX2 928 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 HEG1Q9ULI3 1381 aa20.01■□□□□ 0.79
SQSTM1-213ENST00000510187 GIGYF1O75420 1035 aaPredicted RBP20■□□□□ 0.79
SQSTM1-213ENST00000510187 RXRBP28702 533 aa20■□□□□ 0.79
SQSTM1-213ENST00000510187 C22orf23Q9BZE7 217 aa20■□□□□ 0.79
SQSTM1-213ENST00000510187 ZBTB7BO15156 539 aaPredicted RBP19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 FAM182BQ5T319 152 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 KAT6BQ8WYB5 2073 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 ITGB4P16144 1822 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 HDGFL1Q5TGJ6 251 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 NECTIN2Q92692 538 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 ASAP1Q9ULH1 1129 aa19.99■□□□□ 0.79
SQSTM1-213ENST00000510187 EIF2S2P20042 333 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-213ENST00000510187 CCDC30Q5VVM6 783 aa19.98■□□□□ 0.79
SQSTM1-213ENST00000510187 CHD1LQ86WJ1 897 aa19.98■□□□□ 0.79
SQSTM1-213ENST00000510187 API5Q9BZZ5 524 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-213ENST00000510187 ATG3Q9NT62 314 aa19.98■□□□□ 0.79
SQSTM1-213ENST00000510187 PRAMEF22A3QJZ6 481 aa19.97■□□□□ 0.79
SQSTM1-213ENST00000510187 PTCD1O75127 700 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-213ENST00000510187 PAPPAQ13219 1627 aa19.97■□□□□ 0.79
SQSTM1-213ENST00000510187 KCNQ2O43526 872 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 SNRPA1P09661 255 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 KRT27Q7Z3Y8 459 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 ILDR1Q86SU0 546 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 STK31Q9BXU1 1019 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 CHMP4AQ9BY43 222 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 BMP2KLQ5H9B9 411 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 POTEAQ6S8J7 498 aa19.96■□□□□ 0.79
SQSTM1-213ENST00000510187 SLC4A2P04920 1241 aa19.95■□□□□ 0.78
SQSTM1-213ENST00000510187 MFAP1P55081 439 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-213ENST00000510187 KCPQ6ZWJ8 1503 aa19.95■□□□□ 0.78
SQSTM1-213ENST00000510187 UBR2Q8IWV8 1755 aa19.94■□□□□ 0.78
SQSTM1-213ENST00000510187 RBM25P49756 843 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-213ENST00000510187 SLKQ9H2G2 1235 aaPredicted RBP19.93■□□□□ 0.78
SQSTM1-213ENST00000510187 RBM42Q9BTD8 480 aaKnown RBP19.93■□□□□ 0.78
SQSTM1-213ENST00000510187 LNPKQ9C0E8 428 aa19.92■□□□□ 0.78
SQSTM1-213ENST00000510187 USP16Q9Y5T5 823 aa19.92■□□□□ 0.78
SQSTM1-213ENST00000510187 CHPF2Q9P2E5 772 aa19.91■□□□□ 0.78
SQSTM1-213ENST00000510187 BRWD3Q6RI45 1802 aa19.91■□□□□ 0.78
SQSTM1-213ENST00000510187 EIF5BO60841 1220 aaKnown RBP19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 FAM196AQ6ZSG2 479 aa19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 C5P01031 1676 aa19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 RGS12O14924 1447 aa19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 PTF1AQ7RTS3 328 aa19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 VSIG10Q8N0Z9 540 aa19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 DBF4Q9UBU7 674 aaPredicted RBP19.9■□□□□ 0.78
SQSTM1-213ENST00000510187 HSCBQ8IWL3 235 aa19.89■□□□□ 0.77
SQSTM1-213ENST00000510187 SMARCC1Q92922 1105 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-213ENST00000510187 SNX21Q969T3 373 aa19.89■□□□□ 0.77
SQSTM1-213ENST00000510187 CHMP5Q9NZZ3 219 aa19.89■□□□□ 0.77
SQSTM1-213ENST00000510187 PALLDQ8WX93 1383 aa19.88■□□□□ 0.77
SQSTM1-213ENST00000510187 G2E3Q7L622 706 aa19.88■□□□□ 0.77
SQSTM1-213ENST00000510187 NHSQ6T4R5 1651 aa19.88■□□□□ 0.77
SQSTM1-213ENST00000510187 PTPRCP08575 1304 aa19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 ANXA1P04083 346 aa19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 FLIIQ13045 1269 aa19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 ANKRD45Q5TZF3 282 aa19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 INTS3Q68E01 1043 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 TEX13AQ9BXU3 409 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-213ENST00000510187 PROSER3Q2NL68 480 aa19.86■□□□□ 0.77
SQSTM1-213ENST00000510187 DNAJC10Q8IXB1 793 aa19.86■□□□□ 0.77
SQSTM1-213ENST00000510187 SIRT2Q8IXJ6 389 aa19.86■□□□□ 0.77
SQSTM1-213ENST00000510187 SLC4A9Q96Q91 983 aa19.86■□□□□ 0.77
SQSTM1-213ENST00000510187 DDX21Q9NR30 783 aaKnown RBP eCLIP19.86■□□□□ 0.77
SQSTM1-213ENST00000510187 BCL11BQ9C0K0 894 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 PHAXQ9H814 394 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 LAMB4A4D0S4 1761 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 LOC102724428A0A0B4J2F2 783 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 SIK1P57059 783 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 PDIA6Q15084 440 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 IL27Q8NEV9 243 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 HYPKQ9NX55 129 aa19.85■□□□□ 0.77
SQSTM1-213ENST00000510187 STARD3NLO95772 234 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms