RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 PRKAR2BP31323 418 aa17.46■□□□□ 0.39
HMGCS1-205ENST00000508319 PHACTR3Q96KR7 559 aa17.46■□□□□ 0.39
HMGCS1-205ENST00000508319 SCN7AQ01118 1682 aa17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 POLRMTO00411 1230 aaKnown RBP17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 DPEP1P16444 411 aa17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 TEFQ10587 303 aa17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 USPL1Q5W0Q7 1092 aa17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 TTC5Q8N0Z6 440 aa17.45■□□□□ 0.38
HMGCS1-205ENST00000508319 ZPR1O75312 459 aa17.44■□□□□ 0.38
HMGCS1-205ENST00000508319 ZNF790Q6PG37 636 aa17.44■□□□□ 0.38
HMGCS1-205ENST00000508319 ZNF496Q96IT1 587 aaPredicted RBP17.44■□□□□ 0.38
HMGCS1-205ENST00000508319 NARFQ9UHQ1 456 aa17.44■□□□□ 0.38
HMGCS1-205ENST00000508319 BCS1LQ9Y276 419 aa17.44■□□□□ 0.38
HMGCS1-205ENST00000508319 HEG1Q9ULI3 1381 aa17.43■□□□□ 0.38
HMGCS1-205ENST00000508319 KCNA3P22001 575 aa17.43■□□□□ 0.38
HMGCS1-205ENST00000508319 TM4SF1P30408 202 aa17.43■□□□□ 0.38
HMGCS1-205ENST00000508319 BCL2L12Q9HB09 334 aa17.42■□□□□ 0.38
HMGCS1-205ENST00000508319 NUDCQ9Y266 331 aa17.42■□□□□ 0.38
HMGCS1-205ENST00000508319 CEP350Q5VT06 3117 aa17.41■□□□□ 0.38
HMGCS1-205ENST00000508319 DLEC1Q9Y238 1755 aa17.41■□□□□ 0.38
HMGCS1-205ENST00000508319 U2AF1L5P0DN76 240 aaPredicted RBP17.41■□□□□ 0.38
HMGCS1-205ENST00000508319 U2AF1Q01081 240 aaKnown RBP eCLIP17.41■□□□□ 0.38
HMGCS1-205ENST00000508319 STARD3NLO95772 234 aa17.4■□□□□ 0.38
HMGCS1-205ENST00000508319 CANXP27824 592 aaKnown RBP17.4■□□□□ 0.38
HMGCS1-205ENST00000508319 EIF5P55010 431 aaKnown RBP17.4■□□□□ 0.38
HMGCS1-205ENST00000508319 NFIXQ14938 502 aa17.4■□□□□ 0.38
HMGCS1-205ENST00000508319 GPBP1L1Q9HC44 474 aaPredicted RBP17.4■□□□□ 0.38
HMGCS1-205ENST00000508319 BCORQ6W2J9 1755 aa17.39■□□□□ 0.37
HMGCS1-205ENST00000508319 SENP3-EIF4A1A0A087X0R7 540 aa17.39■□□□□ 0.37
HMGCS1-205ENST00000508319 FCHSD2O94868 740 aa17.39■□□□□ 0.37
HMGCS1-205ENST00000508319 KCNQ3O43525 872 aa17.38■□□□□ 0.37
HMGCS1-205ENST00000508319 ZNF526Q8TF50 670 aaPredicted RBP17.38■□□□□ 0.37
HMGCS1-205ENST00000508319 FMNL2Q96PY5 1086 aa17.38■□□□□ 0.37
HMGCS1-205ENST00000508319 DLG5Q8TDM6 1919 aa17.38■□□□□ 0.37
HMGCS1-205ENST00000508319 BTBD11A6QL63 1104 aa17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 CHRNA5P30532 468 aa17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 MCM10Q7L590 875 aa17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 TEX13AQ9BXU3 409 aaPredicted RBP17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 PIM2Q9P1W9 311 aa17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 CARMIL3Q8ND23 1372 aa17.37■□□□□ 0.37
HMGCS1-205ENST00000508319 ANKRD31Q8N7Z5 1873 aa17.36■□□□□ 0.37
HMGCS1-205ENST00000508319 A0A087WZG4 1122 aa17.35■□□□□ 0.37
HMGCS1-205ENST00000508319 DALRD3Q5D0E6 543 aaKnown RBP17.35■□□□□ 0.37
HMGCS1-205ENST00000508319 ARHGAP27Q6ZUM4 889 aa17.35■□□□□ 0.37
HMGCS1-205ENST00000508319 SBF1O95248 1867 aa17.35■□□□□ 0.37
HMGCS1-205ENST00000508319 LAMB4A4D0S4 1761 aa17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 SERPINB2P05120 415 aa17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 COL11A2P13942 1736 aaPredicted RBP17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 IL6STP40189 918 aaPredicted RBP17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 DCTN1Q14203 1278 aa17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 RTF1Q92541 710 aaKnown RBP17.34■□□□□ 0.37
HMGCS1-205ENST00000508319 KDM3BQ7LBC6 1761 aa17.33■□□□□ 0.37
HMGCS1-205ENST00000508319 A1BGP04217 495 aa17.33■□□□□ 0.36
HMGCS1-205ENST00000508319 ZNF330Q9Y3S2 320 aaPredicted RBP17.33■□□□□ 0.36
HMGCS1-205ENST00000508319 PRAMEF22A3QJZ6 481 aa17.32■□□□□ 0.36
HMGCS1-205ENST00000508319 HTATSF1O43719 755 aaKnown RBP17.32■□□□□ 0.36
HMGCS1-205ENST00000508319 TBC1D9BQ66K14 1250 aa17.32■□□□□ 0.36
HMGCS1-205ENST00000508319 BICDL1Q6ZP65 573 aa17.32■□□□□ 0.36
HMGCS1-205ENST00000508319 TBC1D2BQ9UPU7 963 aa17.32■□□□□ 0.36
HMGCS1-205ENST00000508319 KIF3CO14782 793 aa17.31■□□□□ 0.36
HMGCS1-205ENST00000508319 USP16Q9Y5T5 823 aa17.31■□□□□ 0.36
HMGCS1-205ENST00000508319 CAMTA2O94983 1202 aa17.3■□□□□ 0.36
HMGCS1-205ENST00000508319 C9orf131Q5VYM1 1079 aa17.3■□□□□ 0.36
HMGCS1-205ENST00000508319 PLEKHF1Q96S99 279 aa17.3■□□□□ 0.36
HMGCS1-205ENST00000508319 SNRPA1P09661 255 aaKnown RBP17.29■□□□□ 0.36
HMGCS1-205ENST00000508319 PIP4K2AP48426 406 aaPredicted RBP17.29■□□□□ 0.36
HMGCS1-205ENST00000508319 PRR5LQ6MZQ0 368 aa17.28■□□□□ 0.36
HMGCS1-205ENST00000508319 TAF7Q15545 349 aaPredicted RBP17.27■□□□□ 0.36
HMGCS1-205ENST00000508319 DZIP3Q86Y13 1208 aaKnown RBP17.27■□□□□ 0.36
HMGCS1-205ENST00000508319 C2CD5Q86YS7 1000 aa17.27■□□□□ 0.36
HMGCS1-205ENST00000508319 NPM2Q86SE8 214 aaKnown RBP17.26■□□□□ 0.35
HMGCS1-205ENST00000508319 RNF181Q9P0P0 153 aa17.26■□□□□ 0.35
HMGCS1-205ENST00000508319 TIAM2Q8IVF5 1701 aa17.26■□□□□ 0.35
HMGCS1-205ENST00000508319 TNRC6CQ9HCJ0 1690 aaKnown RBP17.26■□□□□ 0.35
HMGCS1-205ENST00000508319 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NBPF26B4DH59 902 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 H0YIN7 160 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NEFMP07197 916 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 RASSF7Q02833 373 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NFE2L2Q16236 605 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NBPF10Q6P3W6 841 aaKnown RBP17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 CCDC24Q8N4L8 307 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NBPF15Q8N660 670 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 TTLL6Q8N841 843 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 SETDB2Q96T68 719 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 BRIP1Q9BX63 1249 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 NMRK2Q9NPI5 230 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 MIS18AQ9NYP9 233 aa17.25■□□□□ 0.35
HMGCS1-205ENST00000508319 CACNA1SQ13698 1873 aa17.24■□□□□ 0.35
HMGCS1-205ENST00000508319 CCDC88AQ3V6T2 1871 aa17.24■□□□□ 0.35
HMGCS1-205ENST00000508319 HSPA6P17066 643 aa17.24■□□□□ 0.35
HMGCS1-205ENST00000508319 CNBD1Q8NA66 436 aa17.24■□□□□ 0.35
HMGCS1-205ENST00000508319 FER1L6Q2WGJ9 1857 aa17.24■□□□□ 0.35
HMGCS1-205ENST00000508319 PDE6BP35913 854 aa17.23■□□□□ 0.35
HMGCS1-205ENST00000508319 PRELPP51888 382 aa17.23■□□□□ 0.35
HMGCS1-205ENST00000508319 RALBP1Q15311 655 aa17.23■□□□□ 0.35
HMGCS1-205ENST00000508319 CLEC4GQ6UXB4 293 aa17.23■□□□□ 0.35
HMGCS1-205ENST00000508319 THUMPD2Q9BTF0 503 aaKnown RBP17.23■□□□□ 0.35
HMGCS1-205ENST00000508319 MAPK8IP3Q9UPT6 1336 aa17.22■□□□□ 0.35
HMGCS1-205ENST00000508319 PDZRN3Q9UPQ7 1066 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms