RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-222	ENST00000508238	QSER1	Q2KHR3	1735 aa		10.84	□□□□□ -0.67
UBE2D3-222	ENST00000508238	NPC1L1	Q9UHC9	1359 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	POTEF	A5A3E0	1075 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238		G3V3G9	751 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PHKG2	P15735	406 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PDE4A	P27815	886 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PIGB	Q92521	554 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	BOLA1	Q9Y3E2	137 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PNPLA7	Q6ZV29	1317 aa		10.83	□□□□□ -0.68
UBE2D3-222	ENST00000508238	IL13	P35225	146 aa		10.82	□□□□□ -0.68
UBE2D3-222	ENST00000508238	KCNQ4	P56696	695 aa		10.82	□□□□□ -0.68
UBE2D3-222	ENST00000508238	AMOT	Q4VCS5	1084 aa		10.82	□□□□□ -0.68
UBE2D3-222	ENST00000508238	LARP6	Q9BRS8	491 aa	Known RBP	10.82	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TFCP2L1	Q9NZI6	479 aa		10.82	□□□□□ -0.68
UBE2D3-222	ENST00000508238	KDR	P35968	1356 aa		10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PALLD	Q8WX93	1383 aa		10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	ERVV-2	B6SEH9	535 aa		10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	HSP90AB1	P08238	724 aa	Known RBP	10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TOGARAM1	Q9Y4F4	1720 aa		10.81	□□□□□ -0.68
UBE2D3-222	ENST00000508238	MTHFS	P49914	203 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	DCAF5	Q96JK2	942 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	ARX	Q96QS3	562 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	SYT17	Q9BSW7	474 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	CRISPLD2	Q9H0B8	497 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TMOD3	Q9NYL9	352 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	COL24A1	Q17RW2	1714 aa		10.8	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TAF1L	Q8IZX4	1826 aa		10.79	□□□□□ -0.68
UBE2D3-222	ENST00000508238	MAP3K5	Q99683	1374 aa		10.79	□□□□□ -0.68
UBE2D3-222	ENST00000508238	AEBP1	Q8IUX7	1158 aa		10.79	□□□□□ -0.68
UBE2D3-222	ENST00000508238	FLAD1	Q8NFF5	587 aa		10.79	□□□□□ -0.68
UBE2D3-222	ENST00000508238	LOC102724428	A0A0B4J2F2	783 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	POTEM	A6NI47	508 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	SIK1	P57059	783 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	SULT6B1	Q6IMI4	303 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	COL23A1	Q86Y22	540 aa	Predicted RBP	10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	ASAP1	Q9ULH1	1129 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	TUBGCP6	Q96RT7	1819 aa		10.78	□□□□□ -0.68
UBE2D3-222	ENST00000508238	POLD1	P28340	1107 aa		10.77	□□□□□ -0.69
UBE2D3-222	ENST00000508238	CC2D1B	Q5T0F9	858 aa	Known RBP	10.77	□□□□□ -0.69
UBE2D3-222	ENST00000508238	ZNF530	Q6P9A1	599 aa	Predicted RBP	10.77	□□□□□ -0.69
UBE2D3-222	ENST00000508238	ATG3	Q9NT62	314 aa		10.77	□□□□□ -0.69
UBE2D3-222	ENST00000508238	C5	P01031	1676 aa		10.76	□□□□□ -0.69
UBE2D3-222	ENST00000508238	UTRN	P46939	3433 aa		10.76	□□□□□ -0.69
UBE2D3-222	ENST00000508238	DIAPH1	O60610	1272 aa	Known RBP	10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	MFSD10	Q14728	455 aa		10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	C1orf141	Q5JVX7	400 aa		10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	POTEG	Q6S5H5	508 aa		10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	DDX27	Q96GQ7	796 aa	Known RBP	10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	GPHN	Q9NQX3	736 aa	Predicted RBP	10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	KDM6A	O15550	1401 aa	Predicted RBP	10.75	□□□□□ -0.69
UBE2D3-222	ENST00000508238	SSFA2	P28290	1259 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	ATP6V1A	P38606	617 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	CABP4	P57796	275 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	ITPK1	Q13572	414 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	LINC00116	Q8NCU8	138 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	KCNV2	Q8TDN2	545 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	AK7	Q96M32	723 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	C4B	P0C0L5	1744 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	UBR3	Q6ZT12	1888 aa		10.74	□□□□□ -0.69
UBE2D3-222	ENST00000508238	ZNF831	Q5JPB2	1677 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	NBR1	Q14596	966 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	E2F4	Q16254	413 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	AKAP4	Q5JQC9	854 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	RC3H1	Q5TC82	1133 aa	Known RBP	10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	AMIGO3	Q86WK7	504 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	NFATC2IP	Q8NCF5	419 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	TMC2	Q8TDI7	906 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	SLC4A9	Q96Q91	983 aa		10.73	□□□□□ -0.69
UBE2D3-222	ENST00000508238	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.72	□□□□□ -0.69
UBE2D3-222	ENST00000508238	COL3A1	P02461	1466 aa	Predicted RBP	10.71	□□□□□ -0.69
UBE2D3-222	ENST00000508238	HMOX1	P09601	288 aa		10.71	□□□□□ -0.69
UBE2D3-222	ENST00000508238	MAMSTR	Q6ZN01	415 aa		10.71	□□□□□ -0.69
UBE2D3-222	ENST00000508238	MYH14	Q7Z406	1995 aa	Known RBP	10.71	□□□□□ -0.69
UBE2D3-222	ENST00000508238	SCN11A	Q9UI33	1791 aa		10.71	□□□□□ -0.69
UBE2D3-222	ENST00000508238	CHD4	Q14839	1912 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	CNTNAP4	Q9C0A0	1308 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	GNPAT	O15228	680 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	POTEJ	P0CG39	1038 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	YY1	P25490	414 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	MTHFSD	Q2M296	383 aa	Known RBP	10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	PPP1R15B	Q5SWA1	713 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	SLC52A2	Q9HAB3	445 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	CD2AP	Q9Y5K6	639 aa		10.7	□□□□□ -0.7
UBE2D3-222	ENST00000508238	GOLGB1	Q14789	3259 aa	Known RBP	10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	C2orf72	A6NCS6	295 aa		10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	RNMT	O43148	476 aa	Known RBP	10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	DSG2	Q14126	1118 aa		10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	MSL1	Q68DK7	614 aa		10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	LGR6	Q9HBX8	967 aa		10.69	□□□□□ -0.7
UBE2D3-222	ENST00000508238	RPS6KA4	O75676	772 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	PHF14	O94880	888 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	PPP2R1A	P30153	589 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	TRAPPC3L	Q5T215	181 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	SMIM5	Q71RC9	77 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	CFAP53	Q96M91	514 aa		10.68	□□□□□ -0.7
UBE2D3-222	ENST00000508238	RTCB	Q9Y3I0	505 aa	Known RBP	10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms