RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 TRAK2O60296 914 aa13.56□□□□□ -0.24
CMSS1-208ENST00000496116 GIGYF1O75420 1035 aaPredicted RBP13.56□□□□□ -0.24
CMSS1-208ENST00000496116 SURF6O75683 361 aaKnown RBP13.56□□□□□ -0.24
CMSS1-208ENST00000496116 MCCP23508 829 aa13.56□□□□□ -0.24
CMSS1-208ENST00000496116 HSP90AB4PQ58FF6 505 aa13.56□□□□□ -0.24
CMSS1-208ENST00000496116 SIPA1L3O60292 1781 aaPredicted RBP13.56□□□□□ -0.24
CMSS1-208ENST00000496116 NBPF7P0C2Y1 421 aaPredicted RBP13.55□□□□□ -0.24
CMSS1-208ENST00000496116 RAPGEF4Q8WZA2 1011 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 RILPL2Q969X0 211 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 KIF1BPQ96EK5 621 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 FOXD4L1Q9NU39 408 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 HEG1Q9ULI3 1381 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 ZC3H6P61129 1189 aaKnown RBP13.55□□□□□ -0.24
CMSS1-208ENST00000496116 TSHZ3Q63HK5 1081 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 ESYT1Q9BSJ8 1104 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 HYPKQ9NX55 129 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 ADCY9O60503 1353 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 ADAMTS7Q9UKP4 1686 aa13.55□□□□□ -0.24
CMSS1-208ENST00000496116 ALDH1L1O75891 902 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 RHPN1Q8TCX5 695 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 TMEM94Q12767 1356 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 ANXA1P04083 346 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 KSR2Q6VAB6 950 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 IL1RAPL2Q9NP60 686 aa13.54□□□□□ -0.24
CMSS1-208ENST00000496116 DDX58O95786 925 aaKnown RBP13.53□□□□□ -0.24
CMSS1-208ENST00000496116 TATP17735 454 aaPredicted RBP13.53□□□□□ -0.24
CMSS1-208ENST00000496116 CHMLP26374 656 aa13.53□□□□□ -0.24
CMSS1-208ENST00000496116 CWC22Q9HCG8 908 aaKnown RBP13.53□□□□□ -0.24
CMSS1-208ENST00000496116 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
CMSS1-208ENST00000496116 MAP3K2Q9Y2U5 619 aa13.53□□□□□ -0.24
CMSS1-208ENST00000496116 PLEKHG2Q9H7P9 1386 aa13.53□□□□□ -0.24
CMSS1-208ENST00000496116 GOLGA6L22H0YM25 854 aa13.52□□□□□ -0.24
CMSS1-208ENST00000496116 EPB41L2O43491 1005 aaKnown RBP13.52□□□□□ -0.24
CMSS1-208ENST00000496116 NUCB2P80303 420 aa13.52□□□□□ -0.24
CMSS1-208ENST00000496116 SKOR2Q2VWA4 1001 aaPredicted RBP13.52□□□□□ -0.24
CMSS1-208ENST00000496116 NLRP2Q9NX02 1062 aa13.52□□□□□ -0.24
CMSS1-208ENST00000496116 SPG7Q9UQ90 795 aa13.52□□□□□ -0.24
CMSS1-208ENST00000496116 NPHP3Q7Z494 1330 aa13.52□□□□□ -0.24
CMSS1-208ENST00000496116 MTX1Q13505 466 aa13.52□□□□□ -0.25
CMSS1-208ENST00000496116 CADPS2Q86UW7 1296 aa13.52□□□□□ -0.25
CMSS1-208ENST00000496116 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.52□□□□□ -0.25
CMSS1-208ENST00000496116 BRPF3Q9ULD4 1205 aa13.52□□□□□ -0.25
CMSS1-208ENST00000496116 ABCC6O95255 1503 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 GOLGA6L3A6NEY3 463 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 MCM2P49736 904 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 ANAPC15P60006 121 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 IL27Q8NEV9 243 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 DDX21Q9NR30 783 aaKnown RBP eCLIP13.51□□□□□ -0.25
CMSS1-208ENST00000496116 AK9Q5TCS8 1911 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 SCN11AQ9UI33 1791 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 OS9Q13438 667 aaPredicted RBP13.51□□□□□ -0.25
CMSS1-208ENST00000496116 ZNF790Q6PG37 636 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 CLEC17AQ6ZS10 378 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 NUTM1Q86Y26 1132 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 SLC52A2Q9HAB3 445 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 ANO2Q9NQ90 1003 aa13.51□□□□□ -0.25
CMSS1-208ENST00000496116 CSB-PGBD3P0DP91 1061 aa13.5□□□□□ -0.25
CMSS1-208ENST00000496116 GZF1Q9H116 711 aaPredicted RBP13.5□□□□□ -0.25
CMSS1-208ENST00000496116 TNS3Q68CZ2 1445 aa13.5□□□□□ -0.25
CMSS1-208ENST00000496116 PROSER3Q2NL68 480 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 ERC1Q8IUD2 1116 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 IFNL2Q8IZJ0 200 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 CNTROBQ8N137 903 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 LINS1Q8NG48 757 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 PHKG2P15735 406 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 SSFA2P28290 1259 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 PI4K2BQ8TCG2 481 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 ISY1Q9ULR0 285 aaKnown RBP13.49□□□□□ -0.25
CMSS1-208ENST00000496116 TTC41PQ6P2S7 1318 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 STRCP1A6NGW2 1772 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 COL18A1P39060 1754 aa13.49□□□□□ -0.25
CMSS1-208ENST00000496116 PRAMEF22A3QJZ6 481 aa13.48□□□□□ -0.25
CMSS1-208ENST00000496116 NEK4P51957 841 aa13.48□□□□□ -0.25
CMSS1-208ENST00000496116 UNC5CLQ8IV45 518 aa13.48□□□□□ -0.25
CMSS1-208ENST00000496116 CLASRPQ8N2M8 674 aaKnown RBP13.48□□□□□ -0.25
CMSS1-208ENST00000496116 CRYBG1Q9Y4K1 1723 aa13.48□□□□□ -0.25
CMSS1-208ENST00000496116 FSD2A1L4K1 749 aa13.48□□□□□ -0.25
CMSS1-208ENST00000496116 KDM6AO15550 1401 aaPredicted RBP13.47□□□□□ -0.25
CMSS1-208ENST00000496116 GRM8O00222 908 aa13.47□□□□□ -0.25
CMSS1-208ENST00000496116 NEXNQ0ZGT2 675 aa13.47□□□□□ -0.25
CMSS1-208ENST00000496116 CWF19L2Q2TBE0 894 aaKnown RBP13.47□□□□□ -0.25
CMSS1-208ENST00000496116 RIC3Q7Z5B4 369 aa13.47□□□□□ -0.25
CMSS1-208ENST00000496116 DDX17Q92841 729 aaKnown RBP13.47□□□□□ -0.25
CMSS1-208ENST00000496116 GPATCH3Q96I76 525 aa13.47□□□□□ -0.25
CMSS1-208ENST00000496116 USP42Q9H9J4 1324 aaKnown RBP13.47□□□□□ -0.25
CMSS1-208ENST00000496116 MEGF6O75095 1541 aa13.47□□□□□ -0.25
CMSS1-208ENST00000496116 UTYO14607 1347 aa13.46□□□□□ -0.25
CMSS1-208ENST00000496116 GLRX3O76003 335 aaKnown RBP13.46□□□□□ -0.25
CMSS1-208ENST00000496116 AIMP1Q12904 312 aaKnown RBP13.46□□□□□ -0.25
CMSS1-208ENST00000496116 LARP1Q6PKG0 1096 aaKnown RBP13.46□□□□□ -0.25
CMSS1-208ENST00000496116 TTC5Q8N0Z6 440 aa13.46□□□□□ -0.25
CMSS1-208ENST00000496116 NFATC2IPQ8NCF5 419 aa13.46□□□□□ -0.25
CMSS1-208ENST00000496116 IL17RAQ96F46 866 aa13.46□□□□□ -0.25
CMSS1-208ENST00000496116 DCAF5Q96JK2 942 aa13.46□□□□□ -0.25
CMSS1-208ENST00000496116 BAG4O95429 457 aaKnown RBP13.46□□□□□ -0.26
CMSS1-208ENST00000496116 SLC39A6Q13433 755 aa13.46□□□□□ -0.26
CMSS1-208ENST00000496116 PDIA6Q15084 440 aa13.46□□□□□ -0.26
CMSS1-208ENST00000496116 SPATA31A3Q5VYP0 1347 aa13.45□□□□□ -0.26
CMSS1-208ENST00000496116 CYP2E1P05181 493 aaPredicted RBP13.45□□□□□ -0.26
CMSS1-208ENST00000496116 C5P01031 1676 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms