RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 WWC1Q8IX03 1113 aa17.7■□□□□ 0.42
COL1A1-208ENST00000494334 CFAP44Q96MT7 982 aa17.7■□□□□ 0.42
COL1A1-208ENST00000494334 MTFR1LQ9H019 292 aa17.7■□□□□ 0.42
COL1A1-208ENST00000494334 ATF5Q9Y2D1 282 aaPredicted RBP17.7■□□□□ 0.42
COL1A1-208ENST00000494334 ZBTB1Q9Y2K1 713 aa17.7■□□□□ 0.42
COL1A1-208ENST00000494334 SALL2Q9Y467 1007 aaPredicted RBP17.7■□□□□ 0.42
COL1A1-208ENST00000494334 CASZ1Q86V15 1759 aa17.7■□□□□ 0.42
COL1A1-208ENST00000494334 GIGYF1O75420 1035 aaPredicted RBP17.69■□□□□ 0.42
COL1A1-208ENST00000494334 ZNF853P0CG23 659 aa17.69■□□□□ 0.42
COL1A1-208ENST00000494334 CALD1Q05682 793 aaKnown RBP17.69■□□□□ 0.42
COL1A1-208ENST00000494334 ARHGEF1Q92888 912 aaKnown RBP17.69■□□□□ 0.42
COL1A1-208ENST00000494334 SPON1Q9HCB6 807 aa17.69■□□□□ 0.42
COL1A1-208ENST00000494334 TUBGCP6Q96RT7 1819 aa17.68■□□□□ 0.42
COL1A1-208ENST00000494334 A1BGP04217 495 aa17.68■□□□□ 0.42
COL1A1-208ENST00000494334 ADRA2BP18089 450 aa17.68■□□□□ 0.42
COL1A1-208ENST00000494334 QSER1Q2KHR3 1735 aa17.68■□□□□ 0.42
COL1A1-208ENST00000494334 IFT57Q9NWB7 429 aa17.68■□□□□ 0.42
COL1A1-208ENST00000494334 MYH14Q7Z406 1995 aaKnown RBP17.68■□□□□ 0.42
COL1A1-208ENST00000494334 UBR3Q6ZT12 1888 aa17.67■□□□□ 0.42
COL1A1-208ENST00000494334 KDM3BQ7LBC6 1761 aa17.67■□□□□ 0.42
COL1A1-208ENST00000494334 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
COL1A1-208ENST00000494334 SOS1Q07889 1333 aaPredicted RBP17.67■□□□□ 0.42
COL1A1-208ENST00000494334 PTGER2P43116 358 aa17.66■□□□□ 0.42
COL1A1-208ENST00000494334 GNAI1P63096 354 aa17.66■□□□□ 0.42
COL1A1-208ENST00000494334 MBIPQ9NS73 344 aa17.66■□□□□ 0.42
COL1A1-208ENST00000494334 RFC4P35249 363 aa17.65■□□□□ 0.42
COL1A1-208ENST00000494334 NGEFQ8N5V2 710 aa17.65■□□□□ 0.42
COL1A1-208ENST00000494334 SGIP1Q9BQI5 828 aa17.65■□□□□ 0.42
COL1A1-208ENST00000494334 EIF5P55010 431 aaKnown RBP17.64■□□□□ 0.41
COL1A1-208ENST00000494334 KRT24Q2M2I5 525 aa17.64■□□□□ 0.41
COL1A1-208ENST00000494334 IL6STP40189 918 aaPredicted RBP17.63■□□□□ 0.41
COL1A1-208ENST00000494334 PIP4K2AP48426 406 aaPredicted RBP17.63■□□□□ 0.41
COL1A1-208ENST00000494334 MSL1Q68DK7 614 aa17.63■□□□□ 0.41
COL1A1-208ENST00000494334 WDR63Q8IWG1 891 aa17.63■□□□□ 0.41
COL1A1-208ENST00000494334 NBPF26B4DH59 902 aa17.62■□□□□ 0.41
COL1A1-208ENST00000494334 NBPF10Q6P3W6 841 aaKnown RBP17.62■□□□□ 0.41
COL1A1-208ENST00000494334 NBPF15Q8N660 670 aa17.62■□□□□ 0.41
COL1A1-208ENST00000494334 SRP68Q9UHB9 627 aaKnown RBP17.62■□□□□ 0.41
COL1A1-208ENST00000494334 IL16Q14005 1332 aa17.62■□□□□ 0.41
COL1A1-208ENST00000494334 COL15A1P39059 1388 aa17.62■□□□□ 0.41
COL1A1-208ENST00000494334 GYS1P13807 737 aa17.61■□□□□ 0.41
COL1A1-208ENST00000494334 ZNF330Q9Y3S2 320 aaPredicted RBP17.61■□□□□ 0.41
COL1A1-208ENST00000494334 USP42Q9H9J4 1324 aaKnown RBP17.61■□□□□ 0.41
COL1A1-208ENST00000494334 EIF2S2P20042 333 aaKnown RBP17.6■□□□□ 0.41
COL1A1-208ENST00000494334 POLD1P28340 1107 aa17.6■□□□□ 0.41
COL1A1-208ENST00000494334 TSR2Q969E8 191 aaKnown RBP17.6■□□□□ 0.41
COL1A1-208ENST00000494334 NARFQ9UHQ1 456 aa17.6■□□□□ 0.41
COL1A1-208ENST00000494334 LRP5O75197 1615 aa17.6■□□□□ 0.41
COL1A1-208ENST00000494334 SRCAPQ6ZRS2 3230 aa17.6■□□□□ 0.41
COL1A1-208ENST00000494334 ZNF521Q96K83 1311 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 A0A087WZG4 1122 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 ZPR1O75312 459 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 DUSP27Q5VZP5 1158 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 USPL1Q5W0Q7 1092 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 NLGN1Q8N2Q7 840 aa17.59■□□□□ 0.41
COL1A1-208ENST00000494334 SPINK5Q9NQ38 1064 aaPredicted RBP17.59■□□□□ 0.41
COL1A1-208ENST00000494334 HOXB7P09629 217 aa17.58■□□□□ 0.4
COL1A1-208ENST00000494334 NPM2Q86SE8 214 aaKnown RBP17.58■□□□□ 0.4
COL1A1-208ENST00000494334 ARXQ96QS3 562 aa17.58■□□□□ 0.4
COL1A1-208ENST00000494334 PPP1R1BQ9UD71 204 aaPredicted RBP17.58■□□□□ 0.4
COL1A1-208ENST00000494334 TBC1D2BQ9UPU7 963 aa17.58■□□□□ 0.4
COL1A1-208ENST00000494334 ELL2O00472 640 aaPredicted RBP17.57■□□□□ 0.4
COL1A1-208ENST00000494334 FKBP8Q14318 412 aa17.57■□□□□ 0.4
COL1A1-208ENST00000494334 PDIA6Q15084 440 aa17.57■□□□□ 0.4
COL1A1-208ENST00000494334 C8orf58Q8NAV2 365 aa17.57■□□□□ 0.4
COL1A1-208ENST00000494334 NECTIN2Q92692 538 aa17.57■□□□□ 0.4
COL1A1-208ENST00000494334 BCL2L12Q9HB09 334 aa17.57■□□□□ 0.4
COL1A1-208ENST00000494334 ERBB4Q15303 1308 aa17.56■□□□□ 0.4
COL1A1-208ENST00000494334 FANCIQ9NVI1 1328 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 MYL6BP14649 208 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 HDGFL1Q5TGJ6 251 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 DZIP3Q86Y13 1208 aaKnown RBP17.55■□□□□ 0.4
COL1A1-208ENST00000494334 TSPYL6Q8N831 410 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 C4AP0C0L4 1744 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 COL24A1Q17RW2 1714 aa17.55■□□□□ 0.4
COL1A1-208ENST00000494334 LAMB4A4D0S4 1761 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 CAMTA2O94983 1202 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 ANXA1P04083 346 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 MMP10P09238 476 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 PROSER3Q2NL68 480 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 LRP10Q7Z4F1 713 aa17.54■□□□□ 0.4
COL1A1-208ENST00000494334 TM4SF1P30408 202 aa17.53■□□□□ 0.4
COL1A1-208ENST00000494334 GOLGA2Q08379 1002 aa17.53■□□□□ 0.4
COL1A1-208ENST00000494334 FHDC1Q9C0D6 1143 aaPredicted RBP17.52■□□□□ 0.4
COL1A1-208ENST00000494334 MYH16Q9H6N6 1097 aa17.52■□□□□ 0.4
COL1A1-208ENST00000494334 DDX21Q9NR30 783 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL1A1-208ENST00000494334 CHPF2Q9P2E5 772 aa17.52■□□□□ 0.4
COL1A1-208ENST00000494334 EXOSC9Q06265 439 aaKnown RBP17.51■□□□□ 0.39
COL1A1-208ENST00000494334 NFIXQ14938 502 aa17.51■□□□□ 0.39
COL1A1-208ENST00000494334 TTLL7Q6ZT98 887 aa17.51■□□□□ 0.39
COL1A1-208ENST00000494334 DDR1Q08345 913 aa17.5■□□□□ 0.39
COL1A1-208ENST00000494334 TWISTNBQ3B726 338 aaPredicted RBP17.5■□□□□ 0.39
COL1A1-208ENST00000494334 TBC1D9BQ66K14 1250 aa17.5■□□□□ 0.39
COL1A1-208ENST00000494334 SYT17Q9BSW7 474 aa17.5■□□□□ 0.39
COL1A1-208ENST00000494334 DBF4Q9UBU7 674 aaPredicted RBP17.5■□□□□ 0.39
COL1A1-208ENST00000494334 PARP3Q9Y6F1 533 aa17.5■□□□□ 0.39
COL1A1-208ENST00000494334 E9PSI1 815 aa17.49■□□□□ 0.39
COL1A1-208ENST00000494334 POLRMTO00411 1230 aaKnown RBP17.49■□□□□ 0.39
COL1A1-208ENST00000494334 SLFN5Q08AF3 891 aa17.49■□□□□ 0.39
COL1A1-208ENST00000494334 HLFQ16534 295 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms