RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 ZNF831Q5JPB2 1677 aa12.01□□□□□ -0.49
HDAC6-232ENST00000489053 SNRPA1P09661 255 aaKnown RBP12.01□□□□□ -0.49
HDAC6-232ENST00000489053 USPL1Q5W0Q7 1092 aa12.01□□□□□ -0.49
HDAC6-232ENST00000489053 WWC3Q9ULE0 1092 aa12.01□□□□□ -0.49
HDAC6-232ENST00000489053 SOS1Q07889 1333 aaPredicted RBP12.01□□□□□ -0.49
HDAC6-232ENST00000489053 UTRNP46939 3433 aa12□□□□□ -0.49
HDAC6-232ENST00000489053 FKBP8Q14318 412 aa12□□□□□ -0.49
HDAC6-232ENST00000489053 NARFQ9UHQ1 456 aa12□□□□□ -0.49
HDAC6-232ENST00000489053 KCPQ6ZWJ8 1503 aa12□□□□□ -0.49
HDAC6-232ENST00000489053 RIPK4P57078 832 aa11.99□□□□□ -0.49
HDAC6-232ENST00000489053 TGFB2P61812 414 aa11.99□□□□□ -0.49
HDAC6-232ENST00000489053 COL5A3P25940 1745 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-232ENST00000489053 IL6STP40189 918 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-232ENST00000489053 NEUROD2Q15784 382 aa11.98□□□□□ -0.49
HDAC6-232ENST00000489053 BICDL1Q6ZP65 573 aa11.98□□□□□ -0.49
HDAC6-232ENST00000489053 CCDC146Q8IYE0 955 aa11.98□□□□□ -0.49
HDAC6-232ENST00000489053 CICQ96RK0 1608 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-232ENST00000489053 KCNQ3O43525 872 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 YBX3P16989 372 aaKnown RBP eCLIP11.97□□□□□ -0.49
HDAC6-232ENST00000489053 PLEKHF1Q96S99 279 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 PRKRIP1Q9H875 184 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-232ENST00000489053 MIS18AQ9NYP9 233 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 TSPYL4Q9UJ04 414 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 TBC1D2BQ9UPU7 963 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 BCS1LQ9Y276 419 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 ZNF652Q9Y2D9 606 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 TJP1Q07157 1748 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 ADAMTS7Q9UKP4 1686 aa11.97□□□□□ -0.49
HDAC6-232ENST00000489053 A0A0G2JLW4 131 aa11.96□□□□□ -0.49
HDAC6-232ENST00000489053 ZNF316A6NFI3 1004 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-232ENST00000489053 A1BGP04217 495 aa11.96□□□□□ -0.49
HDAC6-232ENST00000489053 EIF5P55010 431 aaKnown RBP11.96□□□□□ -0.49
HDAC6-232ENST00000489053 RUNDC1Q96C34 613 aa11.96□□□□□ -0.49
HDAC6-232ENST00000489053 C10orf71Q711Q0 1435 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 COL24A1Q17RW2 1714 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 ANP32CO43423 234 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 DPEP1P16444 411 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 DDR1Q08345 913 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 NFIXQ14938 502 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 DZIP3Q86Y13 1208 aaKnown RBP11.95□□□□□ -0.5
HDAC6-232ENST00000489053 SETDB2Q96T68 719 aa11.95□□□□□ -0.5
HDAC6-232ENST00000489053 THUMPD2Q9BTF0 503 aaKnown RBP11.95□□□□□ -0.5
HDAC6-232ENST00000489053 RRP7AQ9Y3A4 280 aaKnown RBP11.95□□□□□ -0.5
HDAC6-232ENST00000489053 POLRMTO00411 1230 aaKnown RBP11.94□□□□□ -0.5
HDAC6-232ENST00000489053 SERPINB2P05120 415 aa11.94□□□□□ -0.5
HDAC6-232ENST00000489053 TMPOP42166 694 aaKnown RBP11.94□□□□□ -0.5
HDAC6-232ENST00000489053 DALRD3Q5D0E6 543 aaKnown RBP11.94□□□□□ -0.5
HDAC6-232ENST00000489053 KIF6Q6ZMV9 814 aa11.94□□□□□ -0.5
HDAC6-232ENST00000489053 PIM2Q9P1W9 311 aa11.94□□□□□ -0.5
HDAC6-232ENST00000489053 LAS1LQ9Y4W2 734 aaKnown RBP11.94□□□□□ -0.5
HDAC6-232ENST00000489053 USP16Q9Y5T5 823 aa11.94□□□□□ -0.5
HDAC6-232ENST00000489053 TM4SF1P30408 202 aa11.93□□□□□ -0.5
HDAC6-232ENST00000489053 PIP4K2AP48426 406 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-232ENST00000489053 ST5P78524 1137 aa11.93□□□□□ -0.5
HDAC6-232ENST00000489053 ARHGAP27Q6ZUM4 889 aa11.93□□□□□ -0.5
HDAC6-232ENST00000489053 NGEFQ8N5V2 710 aa11.93□□□□□ -0.5
HDAC6-232ENST00000489053 C4AP0C0L4 1744 aa11.93□□□□□ -0.5
HDAC6-232ENST00000489053 CARMIL3Q8ND23 1372 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 MYH14Q7Z406 1995 aaKnown RBP11.92□□□□□ -0.5
HDAC6-232ENST00000489053 PXDNLA1KZ92 1463 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 H0YIN7 160 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 GTF2E1P29083 439 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-232ENST00000489053 CALD1Q05682 793 aaKnown RBP11.92□□□□□ -0.5
HDAC6-232ENST00000489053 CNBD1Q8NA66 436 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 ZNF784Q8NCA9 323 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-232ENST00000489053 ADAMTS8Q9UP79 889 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 UBR2Q8IWV8 1755 aa11.92□□□□□ -0.5
HDAC6-232ENST00000489053 PRAMEF22A3QJZ6 481 aa11.91□□□□□ -0.5
HDAC6-232ENST00000489053 PDE6BP35913 854 aa11.91□□□□□ -0.5
HDAC6-232ENST00000489053 EIF4A1P60842 406 aaKnown RBP11.91□□□□□ -0.5
HDAC6-232ENST00000489053 TBC1D9BQ66K14 1250 aa11.91□□□□□ -0.5
HDAC6-232ENST00000489053 NBPF5PQ86XG9 351 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-232ENST00000489053 BABAM1Q9NWV8 329 aa11.91□□□□□ -0.5
HDAC6-232ENST00000489053 GIGYF1O75420 1035 aaPredicted RBP11.9□□□□□ -0.5
HDAC6-232ENST00000489053 MYL6BP14649 208 aa11.9□□□□□ -0.5
HDAC6-232ENST00000489053 EIF2S2P20042 333 aaKnown RBP11.9□□□□□ -0.5
HDAC6-232ENST00000489053 CHRNA5P30532 468 aa11.9□□□□□ -0.5
HDAC6-232ENST00000489053 C2CD5Q86YS7 1000 aa11.9□□□□□ -0.5
HDAC6-232ENST00000489053 BCL2L12Q9HB09 334 aa11.9□□□□□ -0.5
HDAC6-232ENST00000489053 PDZRN3Q9UPQ7 1066 aa11.9□□□□□ -0.5
HDAC6-232ENST00000489053 VIRMAQ69YN4 1812 aaKnown RBP11.9□□□□□ -0.5
HDAC6-232ENST00000489053 CAMTA2O94983 1202 aa11.89□□□□□ -0.51
HDAC6-232ENST00000489053 CLEC4GQ6UXB4 293 aa11.89□□□□□ -0.51
HDAC6-232ENST00000489053 NIP7Q9Y221 180 aaKnown RBP eCLIP11.89□□□□□ -0.51
HDAC6-232ENST00000489053 SIPA1L3O60292 1781 aaPredicted RBP11.89□□□□□ -0.51
HDAC6-232ENST00000489053 FAM177BA6PVY3 158 aa11.88□□□□□ -0.51
HDAC6-232ENST00000489053 TPTE2Q6XPS3 522 aa11.88□□□□□ -0.51
HDAC6-232ENST00000489053 ZNF526Q8TF50 670 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-232ENST00000489053 ZNF622Q969S3 477 aaKnown RBP eCLIP11.88□□□□□ -0.51
HDAC6-232ENST00000489053 GPBP1L1Q9HC44 474 aaPredicted RBP11.88□□□□□ -0.51
HDAC6-232ENST00000489053 MRS2Q9HD23 443 aa11.88□□□□□ -0.51
HDAC6-232ENST00000489053 ERBB4Q15303 1308 aa11.87□□□□□ -0.51
HDAC6-232ENST00000489053 NBPF26B4DH59 902 aa11.87□□□□□ -0.51
HDAC6-232ENST00000489053 NBPF10Q6P3W6 841 aaKnown RBP11.87□□□□□ -0.51
HDAC6-232ENST00000489053 NBPF15Q8N660 670 aa11.87□□□□□ -0.51
HDAC6-232ENST00000489053 TTLL6Q8N841 843 aa11.87□□□□□ -0.51
HDAC6-232ENST00000489053 BRIP1Q9BX63 1249 aa11.87□□□□□ -0.51
HDAC6-232ENST00000489053 APAF1O14727 1248 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 RGL2O15211 777 aa11.86□□□□□ -0.51
HDAC6-232ENST00000489053 PRR5LQ6MZQ0 368 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms