RNA–Protein interactions for RNA: ENST00000480562.3

ABCF3-214, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 1 (best)

Gene ABCF3, Length 1,182 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-214ENST00000480562 TTC5Q8N0Z6 440 aa25.32■■□□□ 1.64
ABCF3-214ENST00000480562 CANXP27824 592 aaKnown RBP25.31■■□□□ 1.64
ABCF3-214ENST00000480562 CHRNA5P30532 468 aa25.31■■□□□ 1.64
ABCF3-214ENST00000480562 PIM2Q9P1W9 311 aa25.31■■□□□ 1.64
ABCF3-214ENST00000480562 NARFQ9UHQ1 456 aa25.31■■□□□ 1.64
ABCF3-214ENST00000480562 BRCA1P38398 1863 aaKnown RBP25.31■■□□□ 1.64
ABCF3-214ENST00000480562 UBR2Q8IWV8 1755 aa25.31■■□□□ 1.64
ABCF3-214ENST00000480562 TEFQ10587 303 aa25.3■■□□□ 1.64
ABCF3-214ENST00000480562 CFAP53Q96M91 514 aa25.3■■□□□ 1.64
ABCF3-214ENST00000480562 NFIXQ14938 502 aa25.29■■□□□ 1.64
ABCF3-214ENST00000480562 ZNF496Q96IT1 587 aaPredicted RBP25.29■■□□□ 1.64
ABCF3-214ENST00000480562 PHACTR3Q96KR7 559 aa25.29■■□□□ 1.64
ABCF3-214ENST00000480562 BCL2L12Q9HB09 334 aa25.29■■□□□ 1.64
ABCF3-214ENST00000480562 PRKAR2BP31323 418 aa25.28■■□□□ 1.64
ABCF3-214ENST00000480562 DALRD3Q5D0E6 543 aaKnown RBP25.28■■□□□ 1.64
ABCF3-214ENST00000480562 RSPH6AQ9H0K4 717 aa25.28■■□□□ 1.64
ABCF3-214ENST00000480562 STARD3NLO95772 234 aa25.27■■□□□ 1.64
ABCF3-214ENST00000480562 ZNF790Q6PG37 636 aa25.27■■□□□ 1.64
ABCF3-214ENST00000480562 PPP2R1AP30153 589 aa25.26■■□□□ 1.63
ABCF3-214ENST00000480562 HEG1Q9ULI3 1381 aa25.25■■□□□ 1.63
ABCF3-214ENST00000480562 ARFGEF1Q9Y6D6 1849 aa25.24■■□□□ 1.63
ABCF3-214ENST00000480562 SIPA1L3O60292 1781 aaPredicted RBP25.24■■□□□ 1.63
ABCF3-214ENST00000480562 KIF3CO14782 793 aa25.24■■□□□ 1.63
ABCF3-214ENST00000480562 EIF5P55010 431 aaKnown RBP25.24■■□□□ 1.63
ABCF3-214ENST00000480562 NUDCQ9Y266 331 aa25.24■■□□□ 1.63
ABCF3-214ENST00000480562 CEP350Q5VT06 3117 aa25.24■■□□□ 1.63
ABCF3-214ENST00000480562 SERPINB2P05120 415 aa25.23■■□□□ 1.63
ABCF3-214ENST00000480562 CEMIPQ8WUJ3 1361 aa25.22■■□□□ 1.63
ABCF3-214ENST00000480562 AFDNP55196 1824 aaKnown RBP25.22■■□□□ 1.63
ABCF3-214ENST00000480562 KCNQ3O43525 872 aa25.22■■□□□ 1.63
ABCF3-214ENST00000480562 U2AF1L5P0DN76 240 aaPredicted RBP25.22■■□□□ 1.63
ABCF3-214ENST00000480562 U2AF1Q01081 240 aaKnown RBP eCLIP25.22■■□□□ 1.63
ABCF3-214ENST00000480562 C9orf131Q5VYM1 1079 aa25.22■■□□□ 1.63
ABCF3-214ENST00000480562 BICDL1Q6ZP65 573 aa25.22■■□□□ 1.63
ABCF3-214ENST00000480562 FMNL2Q96PY5 1086 aa25.21■■□□□ 1.63
ABCF3-214ENST00000480562 ZNF330Q9Y3S2 320 aaPredicted RBP25.21■■□□□ 1.63
ABCF3-214ENST00000480562 A0A087WZG4 1122 aa25.2■■□□□ 1.62
ABCF3-214ENST00000480562 BTBD11A6QL63 1104 aa25.2■■□□□ 1.62
ABCF3-214ENST00000480562 TEX13AQ9BXU3 409 aaPredicted RBP25.2■■□□□ 1.62
ABCF3-214ENST00000480562 NRXN2Q9P2S2 1712 aa25.19■■□□□ 1.62
ABCF3-214ENST00000480562 A1BGP04217 495 aa25.18■■□□□ 1.62
ABCF3-214ENST00000480562 HSPA6P17066 643 aa25.18■■□□□ 1.62
ABCF3-214ENST00000480562 TBC1D2BQ9UPU7 963 aa25.18■■□□□ 1.62
ABCF3-214ENST00000480562 TBC1D9BQ66K14 1250 aa25.17■■□□□ 1.62
ABCF3-214ENST00000480562 NMRK2Q9NPI5 230 aa25.17■■□□□ 1.62
ABCF3-214ENST00000480562 CARMIL3Q8ND23 1372 aa25.17■■□□□ 1.62
ABCF3-214ENST00000480562 MCM10Q7L590 875 aa25.16■■□□□ 1.62
ABCF3-214ENST00000480562 RNF181Q9P0P0 153 aa25.16■■□□□ 1.62
ABCF3-214ENST00000480562 IL6STP40189 918 aaPredicted RBP25.15■■□□□ 1.62
ABCF3-214ENST00000480562 C2CD5Q86YS7 1000 aa25.15■■□□□ 1.62
ABCF3-214ENST00000480562 RTF1Q92541 710 aaKnown RBP25.14■■□□□ 1.62
ABCF3-214ENST00000480562 DCTN1Q14203 1278 aa25.13■■□□□ 1.61
ABCF3-214ENST00000480562 USP16Q9Y5T5 823 aa25.13■■□□□ 1.61
ABCF3-214ENST00000480562 PRAMEF22A3QJZ6 481 aa25.12■■□□□ 1.61
ABCF3-214ENST00000480562 PIP4K2AP48426 406 aaPredicted RBP25.12■■□□□ 1.61
ABCF3-214ENST00000480562 RASSF7Q02833 373 aa25.12■■□□□ 1.61
ABCF3-214ENST00000480562 CCDC24Q8N4L8 307 aa25.12■■□□□ 1.61
ABCF3-214ENST00000480562 SCN7AQ01118 1682 aa25.12■■□□□ 1.61
ABCF3-214ENST00000480562 H0YIN7 160 aa25.11■■□□□ 1.61
ABCF3-214ENST00000480562 NPM2Q86SE8 214 aaKnown RBP25.11■■□□□ 1.61
ABCF3-214ENST00000480562 TTLL6Q8N841 843 aa25.11■■□□□ 1.61
ABCF3-214ENST00000480562 TOMM70O94826 608 aa25.1■■□□□ 1.61
ABCF3-214ENST00000480562 CAMTA2O94983 1202 aa25.1■■□□□ 1.61
ABCF3-214ENST00000480562 DLEC1Q9Y238 1755 aa25.09■■□□□ 1.61
ABCF3-214ENST00000480562 SBF1O95248 1867 aa25.09■■□□□ 1.61
ABCF3-214ENST00000480562 PRR5LQ6MZQ0 368 aa25.08■■□□□ 1.61
ABCF3-214ENST00000480562 SNRPA1P09661 255 aaKnown RBP25.07■■□□□ 1.6
ABCF3-214ENST00000480562 DZIP3Q86Y13 1208 aaKnown RBP25.07■■□□□ 1.6
ABCF3-214ENST00000480562 SETDB2Q96T68 719 aa25.07■■□□□ 1.6
ABCF3-214ENST00000480562 ANKRD31Q8N7Z5 1873 aa25.06■■□□□ 1.6
ABCF3-214ENST00000480562 HTATSF1O43719 755 aaKnown RBP25.06■■□□□ 1.6
ABCF3-214ENST00000480562 PRELPP51888 382 aa25.06■■□□□ 1.6
ABCF3-214ENST00000480562 ZNF622Q969S3 477 aaKnown RBP eCLIP25.06■■□□□ 1.6
ABCF3-214ENST00000480562 BRIP1Q9BX63 1249 aa25.06■■□□□ 1.6
ABCF3-214ENST00000480562 KDM2BQ8NHM5 1336 aa25.06■■□□□ 1.6
ABCF3-214ENST00000480562 MIS18AQ9NYP9 233 aa25.05■■□□□ 1.6
ABCF3-214ENST00000480562 PDE6BP35913 854 aa25.04■■□□□ 1.6
ABCF3-214ENST00000480562 RRAGCQ9HB90 399 aa25.04■■□□□ 1.6
ABCF3-214ENST00000480562 NPHP1O15259 732 aa25.03■■□□□ 1.6
ABCF3-214ENST00000480562 LMNB1P20700 586 aa25.03■■□□□ 1.6
ABCF3-214ENST00000480562 TAF7Q15545 349 aaPredicted RBP25.03■■□□□ 1.6
ABCF3-214ENST00000480562 C16orf71Q8IYS4 520 aaPredicted RBP25.03■■□□□ 1.6
ABCF3-214ENST00000480562 CNBD1Q8NA66 436 aa25.03■■□□□ 1.6
ABCF3-214ENST00000480562 ZNF219Q9P2Y4 722 aaPredicted RBP25.03■■□□□ 1.6
ABCF3-214ENST00000480562 NBPF26B4DH59 902 aa25.02■■□□□ 1.6
ABCF3-214ENST00000480562 NBPF10Q6P3W6 841 aaKnown RBP25.02■■□□□ 1.6
ABCF3-214ENST00000480562 NBPF15Q8N660 670 aa25.02■■□□□ 1.6
ABCF3-214ENST00000480562 BCORQ6W2J9 1755 aa25.02■■□□□ 1.6
ABCF3-214ENST00000480562 COL11A2P13942 1736 aaPredicted RBP25.01■■□□□ 1.59
ABCF3-214ENST00000480562 NFKBIEO00221 500 aa25.01■■□□□ 1.59
ABCF3-214ENST00000480562 RBM46Q8TBY0 533 aaKnown RBP25.01■■□□□ 1.59
ABCF3-214ENST00000480562 PDZRN3Q9UPQ7 1066 aa25.01■■□□□ 1.59
ABCF3-214ENST00000480562 NEFMP07197 916 aa25■■□□□ 1.59
ABCF3-214ENST00000480562 APLP1P51693 650 aa25■■□□□ 1.59
ABCF3-214ENST00000480562 C21orf2O43822 256 aa24.99■■□□□ 1.59
ABCF3-214ENST00000480562 ST5P78524 1137 aa24.99■■□□□ 1.59
ABCF3-214ENST00000480562 ZC3H4Q9UPT8 1303 aaKnown RBP24.98■■□□□ 1.59
ABCF3-214ENST00000480562 PLEKHF1Q96S99 279 aa24.98■■□□□ 1.59
ABCF3-214ENST00000480562 CLEC4GQ6UXB4 293 aa24.97■■□□□ 1.59
ABCF3-214ENST00000480562 NBPF5PQ86XG9 351 aaPredicted RBP24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms