RNA–Protein interactions for RNA: ENST00000479452.5

EXD3-208, Transcript of exonuclease 3'-5' domain containing 3, human

TSL 1 (best) BASIC

Gene EXD3, Length 962 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EXD3-208	ENST00000479452	GRIN3B	O60391	1043 aa		27.98	■■■□□ 2.07
EXD3-208	ENST00000479452	USPL1	Q5W0Q7	1092 aa		27.98	■■■□□ 2.07
EXD3-208	ENST00000479452	COL5A3	P25940	1745 aa	Predicted RBP	27.98	■■■□□ 2.07
EXD3-208	ENST00000479452	PNISR	Q8TF01	805 aa	Known RBP	27.97	■■■□□ 2.07
EXD3-208	ENST00000479452	PRKRIP1	Q9H875	184 aa	Predicted RBP	27.97	■■■□□ 2.07
EXD3-208	ENST00000479452	ZNF330	Q9Y3S2	320 aa	Predicted RBP	27.97	■■■□□ 2.07
EXD3-208	ENST00000479452	FKBP8	Q14318	412 aa		27.96	■■■□□ 2.07
EXD3-208	ENST00000479452	NARF	Q9UHQ1	456 aa		27.96	■■■□□ 2.07
EXD3-208	ENST00000479452	SNRPA1	P09661	255 aa	Known RBP	27.95	■■■□□ 2.06
EXD3-208	ENST00000479452	TJP1	Q07157	1748 aa		27.95	■■■□□ 2.06
EXD3-208	ENST00000479452	COL15A1	P39059	1388 aa		27.94	■■■□□ 2.06
EXD3-208	ENST00000479452	RIPK4	P57078	832 aa		27.93	■■■□□ 2.06
EXD3-208	ENST00000479452	TGFB2	P61812	414 aa		27.92	■■■□□ 2.06
EXD3-208	ENST00000479452	MIS18A	Q9NYP9	233 aa		27.92	■■■□□ 2.06
EXD3-208	ENST00000479452	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.91	■■■□□ 2.06
EXD3-208	ENST00000479452	A1BG	P04217	495 aa		27.91	■■■□□ 2.06
EXD3-208	ENST00000479452	EIF5	P55010	431 aa	Known RBP	27.91	■■■□□ 2.06
EXD3-208	ENST00000479452	CIC	Q96RK0	1608 aa	Predicted RBP	27.91	■■■□□ 2.06
EXD3-208	ENST00000479452	YBX3	P16989	372 aa	Known RBP eCLIP	27.9	■■■□□ 2.06
EXD3-208	ENST00000479452	IL6ST	P40189	918 aa	Predicted RBP	27.9	■■■□□ 2.06
EXD3-208	ENST00000479452	LMOD3	Q0VAK6	560 aa		27.9	■■■□□ 2.06
EXD3-208	ENST00000479452	USP16	Q9Y5T5	823 aa		27.9	■■■□□ 2.06
EXD3-208	ENST00000479452	MYH14	Q7Z406	1995 aa	Known RBP	27.9	■■■□□ 2.06
EXD3-208	ENST00000479452	TM4SF1	P30408	202 aa		27.88	■■■□□ 2.05
EXD3-208	ENST00000479452	CCDC146	Q8IYE0	955 aa		27.88	■■■□□ 2.05
EXD3-208	ENST00000479452	THUMPD2	Q9BTF0	503 aa	Known RBP	27.88	■■■□□ 2.05
EXD3-208	ENST00000479452	WWC3	Q9ULE0	1092 aa		27.88	■■■□□ 2.05
EXD3-208	ENST00000479452	VIRMA	Q69YN4	1812 aa	Known RBP	27.88	■■■□□ 2.05
EXD3-208	ENST00000479452	RUNDC1	Q96C34	613 aa		27.87	■■■□□ 2.05
EXD3-208	ENST00000479452	TMPO	P42166	694 aa	Known RBP	27.86	■■■□□ 2.05
EXD3-208	ENST00000479452	NEUROD2	Q15784	382 aa		27.86	■■■□□ 2.05
EXD3-208	ENST00000479452	ADAMTS8	Q9UP79	889 aa		27.86	■■■□□ 2.05
EXD3-208	ENST00000479452	TBC1D2B	Q9UPU7	963 aa		27.86	■■■□□ 2.05
EXD3-208	ENST00000479452		A0A0G2JLW4	131 aa		27.85	■■■□□ 2.05
EXD3-208	ENST00000479452	DDR1	Q08345	913 aa		27.85	■■■□□ 2.05
EXD3-208	ENST00000479452	UBR2	Q8IWV8	1755 aa		27.84	■■■□□ 2.05
EXD3-208	ENST00000479452	PRAMEF22	A3QJZ6	481 aa		27.84	■■■□□ 2.05
EXD3-208	ENST00000479452	POLRMT	O00411	1230 aa	Known RBP	27.84	■■■□□ 2.05
EXD3-208	ENST00000479452	NFIX	Q14938	502 aa		27.84	■■■□□ 2.05
EXD3-208	ENST00000479452	BICDL1	Q6ZP65	573 aa		27.84	■■■□□ 2.05
EXD3-208	ENST00000479452	RRP7A	Q9Y3A4	280 aa	Known RBP	27.83	■■■□□ 2.05
EXD3-208	ENST00000479452	SIPA1L3	O60292	1781 aa	Predicted RBP	27.82	■■■□□ 2.04
EXD3-208	ENST00000479452	BCL2L12	Q9HB09	334 aa		27.82	■■■□□ 2.04
EXD3-208	ENST00000479452	TSPYL4	Q9UJ04	414 aa		27.82	■■■□□ 2.04
EXD3-208	ENST00000479452	SERPINB2	P05120	415 aa		27.81	■■■□□ 2.04
EXD3-208	ENST00000479452	DPEP1	P16444	411 aa		27.81	■■■□□ 2.04
EXD3-208	ENST00000479452	DZIP3	Q86Y13	1208 aa	Known RBP	27.81	■■■□□ 2.04
EXD3-208	ENST00000479452	PIP4K2A	P48426	406 aa	Predicted RBP	27.8	■■■□□ 2.04
EXD3-208	ENST00000479452	BCS1L	Q9Y276	419 aa		27.8	■■■□□ 2.04
EXD3-208	ENST00000479452	C10orf71	Q711Q0	1435 aa		27.8	■■■□□ 2.04
EXD3-208	ENST00000479452	EIF4A1	P60842	406 aa	Known RBP	27.79	■■■□□ 2.04
EXD3-208	ENST00000479452	C4A	P0C0L4	1744 aa		27.78	■■■□□ 2.04
EXD3-208	ENST00000479452	NPHP1	O15259	732 aa		27.78	■■■□□ 2.04
EXD3-208	ENST00000479452	BABAM1	Q9NWV8	329 aa		27.78	■■■□□ 2.04
EXD3-208	ENST00000479452	GIGYF1	O75420	1035 aa	Predicted RBP	27.77	■■■□□ 2.04
EXD3-208	ENST00000479452	PIM2	Q9P1W9	311 aa		27.77	■■■□□ 2.04
EXD3-208	ENST00000479452	ANP32C	O43423	234 aa		27.76	■■■□□ 2.03
EXD3-208	ENST00000479452	TBC1D9B	Q66K14	1250 aa		27.76	■■■□□ 2.03
EXD3-208	ENST00000479452	SETDB2	Q96T68	719 aa		27.76	■■■□□ 2.03
EXD3-208	ENST00000479452	ZNF652	Q9Y2D9	606 aa		27.76	■■■□□ 2.03
EXD3-208	ENST00000479452	PXDNL	A1KZ92	1463 aa		27.76	■■■□□ 2.03
EXD3-208	ENST00000479452	CAMTA2	O94983	1202 aa		27.75	■■■□□ 2.03
EXD3-208	ENST00000479452	ZNF784	Q8NCA9	323 aa	Predicted RBP	27.75	■■■□□ 2.03
EXD3-208	ENST00000479452	LAS1L	Q9Y4W2	734 aa	Known RBP	27.75	■■■□□ 2.03
EXD3-208	ENST00000479452	DALRD3	Q5D0E6	543 aa	Known RBP	27.73	■■■□□ 2.03
EXD3-208	ENST00000479452	NGEF	Q8N5V2	710 aa		27.73	■■■□□ 2.03
EXD3-208	ENST00000479452	NBPF26	B4DH59	902 aa		27.72	■■■□□ 2.03
EXD3-208	ENST00000479452	NBPF10	Q6P3W6	841 aa	Known RBP	27.72	■■■□□ 2.03
EXD3-208	ENST00000479452	CLEC4G	Q6UXB4	293 aa		27.72	■■■□□ 2.03
EXD3-208	ENST00000479452	NBPF15	Q8N660	670 aa		27.72	■■■□□ 2.03
EXD3-208	ENST00000479452	CHRNA5	P30532	468 aa		27.71	■■■□□ 2.03
EXD3-208	ENST00000479452	ARHGAP27	Q6ZUM4	889 aa		27.71	■■■□□ 2.03
EXD3-208	ENST00000479452	CARMIL3	Q8ND23	1372 aa		27.7	■■■□□ 2.02
EXD3-208	ENST00000479452	MYL6B	P14649	208 aa		27.69	■■■□□ 2.02
EXD3-208	ENST00000479452	KCNA3	P22001	575 aa		27.69	■■■□□ 2.02
EXD3-208	ENST00000479452	TRIM35	Q9UPQ4	493 aa		27.69	■■■□□ 2.02
EXD3-208	ENST00000479452	UTRN	P46939	3433 aa		27.69	■■■□□ 2.02
EXD3-208	ENST00000479452		H0YIN7	160 aa		27.68	■■■□□ 2.02
EXD3-208	ENST00000479452	EIF2S2	P20042	333 aa	Known RBP	27.68	■■■□□ 2.02
EXD3-208	ENST00000479452	APAF1	O14727	1248 aa		27.67	■■■□□ 2.02
EXD3-208	ENST00000479452	KIF6	Q6ZMV9	814 aa		27.67	■■■□□ 2.02
EXD3-208	ENST00000479452	C2CD5	Q86YS7	1000 aa		27.67	■■■□□ 2.02
EXD3-208	ENST00000479452	CNBD1	Q8NA66	436 aa		27.67	■■■□□ 2.02
EXD3-208	ENST00000479452	DLG5	Q8TDM6	1919 aa		27.67	■■■□□ 2.02
EXD3-208	ENST00000479452	PDE6B	P35913	854 aa		27.66	■■■□□ 2.02
EXD3-208	ENST00000479452	ST5	P78524	1137 aa		27.66	■■■□□ 2.02
EXD3-208	ENST00000479452	PDZRN3	Q9UPQ7	1066 aa		27.66	■■■□□ 2.02
EXD3-208	ENST00000479452	CHL1	O00533	1208 aa		27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	RGL2	O15211	777 aa		27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	CALD1	Q05682	793 aa	Known RBP	27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	NBPF5P	Q86XG9	351 aa	Predicted RBP	27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	BRIP1	Q9BX63	1249 aa		27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	NIP7	Q9Y221	180 aa	Known RBP eCLIP	27.65	■■■□□ 2.02
EXD3-208	ENST00000479452	PRR5L	Q6MZQ0	368 aa		27.64	■■■□□ 2.02
EXD3-208	ENST00000479452	ERBB4	Q15303	1308 aa		27.64	■■■□□ 2.01
EXD3-208	ENST00000479452	MRS2	Q9HD23	443 aa		27.63	■■■□□ 2.01
EXD3-208	ENST00000479452	KIF13B	Q9NQT8	1826 aa		27.62	■■■□□ 2.01
EXD3-208	ENST00000479452	TPTE2	Q6XPS3	522 aa		27.62	■■■□□ 2.01
EXD3-208	ENST00000479452	CCDC24	Q8N4L8	307 aa		27.62	■■■□□ 2.01
EXD3-208	ENST00000479452	GOLGB1	Q14789	3259 aa	Known RBP	27.62	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms