RNA–Protein interactions for RNA: ENST00000479161.5

C9orf3-217, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 942 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-217ENST00000479161 CCER2I3L3R5 266 aa20.27■□□□□ 0.84
C9orf3-217ENST00000479161 CHL1O00533 1208 aa20.27■□□□□ 0.84
C9orf3-217ENST00000479161 POLD1P28340 1107 aa20.27■□□□□ 0.84
C9orf3-217ENST00000479161 EIF4A1P60842 406 aaKnown RBP20.27■□□□□ 0.84
C9orf3-217ENST00000479161 ARHGEF1Q92888 912 aaKnown RBP20.27■□□□□ 0.84
C9orf3-217ENST00000479161 THUMPD2Q9BTF0 503 aaKnown RBP20.27■□□□□ 0.84
C9orf3-217ENST00000479161 C4AP0C0L4 1744 aa20.27■□□□□ 0.83
C9orf3-217ENST00000479161 MSH5O43196 834 aa20.26■□□□□ 0.83
C9orf3-217ENST00000479161 NEUROD2Q15784 382 aa20.26■□□□□ 0.83
C9orf3-217ENST00000479161 NLGN1Q8N2Q7 840 aa20.26■□□□□ 0.83
C9orf3-217ENST00000479161 RRP7AQ9Y3A4 280 aaKnown RBP20.26■□□□□ 0.83
C9orf3-217ENST00000479161 GIGYF1O75420 1035 aaPredicted RBP20.25■□□□□ 0.83
C9orf3-217ENST00000479161 PHF14O94880 888 aa20.25■□□□□ 0.83
C9orf3-217ENST00000479161 RFC4P35249 363 aa20.25■□□□□ 0.83
C9orf3-217ENST00000479161 IL6STP40189 918 aaPredicted RBP20.25■□□□□ 0.83
C9orf3-217ENST00000479161 EIF5P55010 431 aaKnown RBP20.25■□□□□ 0.83
C9orf3-217ENST00000479161 CFAP44Q96MT7 982 aa20.25■□□□□ 0.83
C9orf3-217ENST00000479161 LAMB4A4D0S4 1761 aa20.24■□□□□ 0.83
C9orf3-217ENST00000479161 ARXQ96QS3 562 aa20.24■□□□□ 0.83
C9orf3-217ENST00000479161 PPP1R1BQ9UD71 204 aaPredicted RBP20.24■□□□□ 0.83
C9orf3-217ENST00000479161 TSPYL4Q9UJ04 414 aa20.24■□□□□ 0.83
C9orf3-217ENST00000479161 ZBTB1Q9Y2K1 713 aa20.24■□□□□ 0.83
C9orf3-217ENST00000479161 A0A087WZG4 1122 aa20.23■□□□□ 0.83
C9orf3-217ENST00000479161 RGL2O15211 777 aa20.23■□□□□ 0.83
C9orf3-217ENST00000479161 MIS18AQ9NYP9 233 aa20.23■□□□□ 0.83
C9orf3-217ENST00000479161 USP16Q9Y5T5 823 aa20.23■□□□□ 0.83
C9orf3-217ENST00000479161 USP42Q9H9J4 1324 aaKnown RBP20.23■□□□□ 0.83
C9orf3-217ENST00000479161 ZNF853P0CG23 659 aa20.22■□□□□ 0.83
C9orf3-217ENST00000479161 COL15A1P39059 1388 aa20.21■□□□□ 0.83
C9orf3-217ENST00000479161 GYS1P13807 737 aa20.21■□□□□ 0.83
C9orf3-217ENST00000479161 IFT57Q9NWB7 429 aa20.21■□□□□ 0.83
C9orf3-217ENST00000479161 NARFQ9UHQ1 456 aa20.21■□□□□ 0.83
C9orf3-217ENST00000479161 ERBB4Q15303 1308 aa20.21■□□□□ 0.83
C9orf3-217ENST00000479161 SMIM5Q71RC9 77 aa20.2■□□□□ 0.82
C9orf3-217ENST00000479161 HOXB7P09629 217 aa20.19■□□□□ 0.82
C9orf3-217ENST00000479161 GNAI1P63096 354 aa20.19■□□□□ 0.82
C9orf3-217ENST00000479161 IL16Q14005 1332 aa20.19■□□□□ 0.82
C9orf3-217ENST00000479161 ZPR1O75312 459 aa20.18■□□□□ 0.82
C9orf3-217ENST00000479161 A1BGP04217 495 aa20.18■□□□□ 0.82
C9orf3-217ENST00000479161 CANXP27824 592 aaKnown RBP20.18■□□□□ 0.82
C9orf3-217ENST00000479161 WWC1Q8IX03 1113 aa20.18■□□□□ 0.82
C9orf3-217ENST00000479161 DIEXFQ68CQ4 756 aaKnown RBP20.17■□□□□ 0.82
C9orf3-217ENST00000479161 PRAMEF22A3QJZ6 481 aa20.16■□□□□ 0.82
C9orf3-217ENST00000479161 NPM2Q86SE8 214 aaKnown RBP20.16■□□□□ 0.82
C9orf3-217ENST00000479161 SYT17Q9BSW7 474 aa20.16■□□□□ 0.82
C9orf3-217ENST00000479161 CD2APQ9Y5K6 639 aa20.16■□□□□ 0.82
C9orf3-217ENST00000479161 MSL1Q68DK7 614 aa20.15■□□□□ 0.82
C9orf3-217ENST00000479161 WDR63Q8IWG1 891 aa20.15■□□□□ 0.82
C9orf3-217ENST00000479161 FAM9BQ8IZU0 186 aa20.15■□□□□ 0.82
C9orf3-217ENST00000479161 CHMP4AQ9BY43 222 aa20.15■□□□□ 0.82
C9orf3-217ENST00000479161 FHDC1Q9C0D6 1143 aaPredicted RBP20.15■□□□□ 0.82
C9orf3-217ENST00000479161 NBPF26B4DH59 902 aa20.14■□□□□ 0.81
C9orf3-217ENST00000479161 TM4SF1P30408 202 aa20.14■□□□□ 0.81
C9orf3-217ENST00000479161 NBPF10Q6P3W6 841 aaKnown RBP20.14■□□□□ 0.81
C9orf3-217ENST00000479161 CLEC4GQ6UXB4 293 aa20.14■□□□□ 0.81
C9orf3-217ENST00000479161 NBPF15Q8N660 670 aa20.14■□□□□ 0.81
C9orf3-217ENST00000479161 KIF13BQ9NQT8 1826 aa20.13■□□□□ 0.81
C9orf3-217ENST00000479161 MMP10P09238 476 aa20.13■□□□□ 0.81
C9orf3-217ENST00000479161 USPL1Q5W0Q7 1092 aa20.13■□□□□ 0.81
C9orf3-217ENST00000479161 MBIPQ9NS73 344 aa20.13■□□□□ 0.81
C9orf3-217ENST00000479161 SRP68Q9UHB9 627 aaKnown RBP20.13■□□□□ 0.81
C9orf3-217ENST00000479161 SCN7AQ01118 1682 aa20.13■□□□□ 0.81
C9orf3-217ENST00000479161 FKBP8Q14318 412 aa20.12■□□□□ 0.81
C9orf3-217ENST00000479161 BCL2L12Q9HB09 334 aa20.12■□□□□ 0.81
C9orf3-217ENST00000479161 BCORQ6W2J9 1755 aa20.12■□□□□ 0.81
C9orf3-217ENST00000479161 LAS1LQ9Y4W2 734 aaKnown RBP20.11■□□□□ 0.81
C9orf3-217ENST00000479161 CAMTA2O94983 1202 aa20.1■□□□□ 0.81
C9orf3-217ENST00000479161 DZIP3Q86Y13 1208 aaKnown RBP20.1■□□□□ 0.81
C9orf3-217ENST00000479161 PARP3Q9Y6F1 533 aa20.1■□□□□ 0.81
C9orf3-217ENST00000479161 NRXN2Q9P2S2 1712 aa20.1■□□□□ 0.81
C9orf3-217ENST00000479161 ERVV-1B6SEH8 477 aa20.09■□□□□ 0.81
C9orf3-217ENST00000479161 PDIA6Q15084 440 aa20.08■□□□□ 0.81
C9orf3-217ENST00000479161 LRP10Q7Z4F1 713 aa20.08■□□□□ 0.81
C9orf3-217ENST00000479161 TBC1D2BQ9UPU7 963 aa20.08■□□□□ 0.81
C9orf3-217ENST00000479161 ZNF652Q9Y2D9 606 aa20.08■□□□□ 0.81
C9orf3-217ENST00000479161 POLRMTO00411 1230 aaKnown RBP20.07■□□□□ 0.8
C9orf3-217ENST00000479161 NFIXQ14938 502 aa20.07■□□□□ 0.8
C9orf3-217ENST00000479161 DDX21Q9NR30 783 aaKnown RBP eCLIP20.07■□□□□ 0.8
C9orf3-217ENST00000479161 ZNF521Q96K83 1311 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 TGFB2P61812 414 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 DDR1Q08345 913 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 DUSP27Q5VZP5 1158 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 C10orf71Q711Q0 1435 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 CACNA1FO60840 1977 aa20.06■□□□□ 0.8
C9orf3-217ENST00000479161 AFDNP55196 1824 aaKnown RBP20.06■□□□□ 0.8
C9orf3-217ENST00000479161 DBF4Q9UBU7 674 aaPredicted RBP20.05■□□□□ 0.8
C9orf3-217ENST00000479161 NUP98P52948 1817 aa20.04■□□□□ 0.8
C9orf3-217ENST00000479161 DCAF8L1A6NGE4 600 aa20.04■□□□□ 0.8
C9orf3-217ENST00000479161 EIF2S2P20042 333 aaKnown RBP20.04■□□□□ 0.8
C9orf3-217ENST00000479161 KRT24Q2M2I5 525 aa20.04■□□□□ 0.8
C9orf3-217ENST00000479161 ZNF330Q9Y3S2 320 aaPredicted RBP20.04■□□□□ 0.8
C9orf3-217ENST00000479161 MAP3K15Q6ZN16 1313 aa20.03■□□□□ 0.8
C9orf3-217ENST00000479161 PIP4K2AP48426 406 aaPredicted RBP20.03■□□□□ 0.8
C9orf3-217ENST00000479161 HDGFL1Q5TGJ6 251 aa20.03■□□□□ 0.8
C9orf3-217ENST00000479161 MIER1Q8N108 512 aa20.03■□□□□ 0.8
C9orf3-217ENST00000479161 CARMIL3Q8ND23 1372 aa20.03■□□□□ 0.8
C9orf3-217ENST00000479161 UTRNP46939 3433 aa20.02■□□□□ 0.8
C9orf3-217ENST00000479161 TBC1D9BQ66K14 1250 aa20.02■□□□□ 0.8
C9orf3-217ENST00000479161 KIF6Q6ZMV9 814 aa20.02■□□□□ 0.8
C9orf3-217ENST00000479161 SETDB2Q96T68 719 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms