RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 CTR9Q6PD62 1173 aa25.17■■□□□ 1.62
SDF4-206ENST00000478938 LRRC8AQ8IWT6 810 aa25.17■■□□□ 1.62
SDF4-206ENST00000478938 MYCBPQ99417 103 aaPredicted RBP25.17■■□□□ 1.62
SDF4-206ENST00000478938 ZCCHC17Q9NP64 241 aaKnown RBP25.17■■□□□ 1.62
SDF4-206ENST00000478938 SYCP2Q9BX26 1530 aa25.17■■□□□ 1.62
SDF4-206ENST00000478938 TPM4P67936 248 aa25.16■■□□□ 1.62
SDF4-206ENST00000478938 ANKRD44Q8N8A2 993 aa25.16■■□□□ 1.62
SDF4-206ENST00000478938 THUMPD2Q9BTF0 503 aaKnown RBP25.16■■□□□ 1.62
SDF4-206ENST00000478938 ZNF428Q96B54 188 aa25.15■■□□□ 1.62
SDF4-206ENST00000478938 NCAPGQ9BPX3 1015 aa25.15■■□□□ 1.62
SDF4-206ENST00000478938 NUP62CLQ9H1M0 184 aa25.15■■□□□ 1.62
SDF4-206ENST00000478938 ATP10DQ9P241 1426 aa25.15■■□□□ 1.62
SDF4-206ENST00000478938 SKILP12757 684 aa25.14■■□□□ 1.62
SDF4-206ENST00000478938 ANAPC15P60006 121 aa25.14■■□□□ 1.62
SDF4-206ENST00000478938 ARHGAP29Q52LW3 1261 aa25.14■■□□□ 1.62
SDF4-206ENST00000478938 EP400NLQ6ZTU2 488 aa25.14■■□□□ 1.61
SDF4-206ENST00000478938 SRLQ86TD4 932 aa25.14■■□□□ 1.61
SDF4-206ENST00000478938 LIG1P18858 919 aa25.13■■□□□ 1.61
SDF4-206ENST00000478938 GUCY2CP25092 1073 aa25.13■■□□□ 1.61
SDF4-206ENST00000478938 RRP15Q9Y3B9 282 aaKnown RBP25.13■■□□□ 1.61
SDF4-206ENST00000478938 ADGRF5Q8IZF2 1346 aa25.13■■□□□ 1.61
SDF4-206ENST00000478938 ZRANB2O95218 330 aaKnown RBP eCLIP25.13■■□□□ 1.61
SDF4-206ENST00000478938 CEP85Q6P2H3 762 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 GPATCH11Q8N954 259 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 SYTL4Q96C24 671 aaPredicted RBP25.12■■□□□ 1.61
SDF4-206ENST00000478938 SLC26A8Q96RN1 970 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 KIAA1210Q9ULL0 1709 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 CLGNO14967 610 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 ATP6V1DQ9Y5K8 247 aa25.12■■□□□ 1.61
SDF4-206ENST00000478938 PDE1AP54750 535 aa25.11■■□□□ 1.61
SDF4-206ENST00000478938 TDRD7Q8NHU6 1098 aaKnown RBP25.11■■□□□ 1.61
SDF4-206ENST00000478938 DRC1Q96MC2 740 aa25.11■■□□□ 1.61
SDF4-206ENST00000478938 ABCA6Q8N139 1617 aa25.11■■□□□ 1.61
SDF4-206ENST00000478938 ARHGEF40Q8TER5 1519 aa25.11■■□□□ 1.61
SDF4-206ENST00000478938 SEC31AO94979 1220 aaKnown RBP25.11■■□□□ 1.61
SDF4-206ENST00000478938 CCAR2Q8N163 923 aaKnown RBP25.11■■□□□ 1.61
SDF4-206ENST00000478938 CDC42BPBQ9Y5S2 1711 aa25.11■■□□□ 1.61
SDF4-206ENST00000478938 TSGA10IPQ3SY00 556 aa25.1■■□□□ 1.61
SDF4-206ENST00000478938 USP32Q8NFA0 1604 aa25.1■■□□□ 1.61
SDF4-206ENST00000478938 OAS2P29728 719 aaKnown RBP25.1■■□□□ 1.61
SDF4-206ENST00000478938 KRT24Q2M2I5 525 aa25.1■■□□□ 1.61
SDF4-206ENST00000478938 TMCO3Q6UWJ1 677 aa25.1■■□□□ 1.61
SDF4-206ENST00000478938 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.1■■□□□ 1.61
SDF4-206ENST00000478938 API5Q9BZZ5 524 aaKnown RBP25.1■■□□□ 1.61
SDF4-206ENST00000478938 KCNG1Q9UIX4 513 aa25.1■■□□□ 1.61
SDF4-206ENST00000478938 JRKLQ9Y4A0 524 aa25.09■■□□□ 1.61
SDF4-206ENST00000478938 TRPM2O94759 1503 aa25.09■■□□□ 1.61
SDF4-206ENST00000478938 DNAJC25Q9H1X3 360 aa25.09■■□□□ 1.61
SDF4-206ENST00000478938 CWC15Q9P013 229 aaKnown RBP25.09■■□□□ 1.61
SDF4-206ENST00000478938 GPS2Q13227 327 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 TNMDQ9H2S6 317 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 SBNO2Q9Y2G9 1366 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 LMOD3Q0VAK6 560 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 CT47A1Q5JQC4 288 aaPredicted RBP25.08■■□□□ 1.61
SDF4-206ENST00000478938 BRMS1Q9HCU9 246 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 SMC3Q9UQE7 1217 aa25.08■■□□□ 1.61
SDF4-206ENST00000478938 CCZ1BP86790 482 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 CCZ1P86791 482 aaPredicted RBP25.07■■□□□ 1.6
SDF4-206ENST00000478938 SART3Q15020 963 aaKnown RBP25.07■■□□□ 1.6
SDF4-206ENST00000478938 PACS2Q86VP3 889 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 L2HGDHQ9H9P8 463 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 AATKQ6ZMQ8 1374 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 CCDC69A6NI79 296 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 TRAK1Q9UPV9 953 aa25.07■■□□□ 1.6
SDF4-206ENST00000478938 COL3A1P02461 1466 aaPredicted RBP25.07■■□□□ 1.6
SDF4-206ENST00000478938 ZNF165P49910 485 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 ERCC6L2Q5T890 1561 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 TTC6Q86TZ1 520 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 FBXO18Q8NFZ0 1043 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 DACT1Q9NYF0 836 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 MTMR6Q9Y217 621 aa25.06■■□□□ 1.6
SDF4-206ENST00000478938 GORABQ5T7V8 394 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 FILIP1Q7Z7B0 1213 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 GOLGA6L1Q8N7Z2 621 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 USP16Q9Y5T5 823 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 PREX2Q70Z35 1606 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 CHMLP26374 656 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 CDC25BP30305 580 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 RPAP2Q8IXW5 612 aaPredicted RBP25.05■■□□□ 1.6
SDF4-206ENST00000478938 RILPL2Q969X0 211 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 UBXN6Q9BZV1 441 aa25.05■■□□□ 1.6
SDF4-206ENST00000478938 A0A1B0GUL7 405 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 TWISTNBQ3B726 338 aaPredicted RBP25.04■■□□□ 1.6
SDF4-206ENST00000478938 REXO1L1PQ8IX06 675 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 GOLGA5Q8TBA6 731 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 FAM135BQ49AJ0 1406 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 SASH3O75995 380 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 TTC31Q49AM3 519 aaPredicted RBP25.04■■□□□ 1.6
SDF4-206ENST00000478938 CCDC34Q96HJ3 373 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 IL25Q9H293 177 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 PLEKHG2Q9H7P9 1386 aa25.04■■□□□ 1.6
SDF4-206ENST00000478938 INO80Q9ULG1 1556 aaPredicted RBP25.04■■□□□ 1.6
SDF4-206ENST00000478938 VPS37CA5D8V6 355 aaPredicted RBP25.03■■□□□ 1.6
SDF4-206ENST00000478938 CASTP20810 708 aaKnown RBP25.03■■□□□ 1.6
SDF4-206ENST00000478938 SNW1Q13573 536 aaKnown RBP25.03■■□□□ 1.6
SDF4-206ENST00000478938 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.03■■□□□ 1.6
SDF4-206ENST00000478938 MYO3AQ8NEV4 1616 aa25.03■■□□□ 1.6
SDF4-206ENST00000478938 NEMFO60524 1076 aa25.03■■□□□ 1.6
SDF4-206ENST00000478938 LMAN1P49257 510 aa25.03■■□□□ 1.6
SDF4-206ENST00000478938 AK2P54819 239 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms